MGE detailed information
MGE type: Conjugative plasmid MGE length: 104859 bp
Accession: NZ_LR594677 Location: 1..104859 Organism: Variovorax sp. PBS-H4 Replicon: plasmid 3
Accession: NZ_LR594677 Location: 1..104859 Organism: Variovorax sp. PBS-H4 Replicon: plasmid 3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5CHR_RS31040 () | 1..1158 | + | 1158 | WP_162584081.1 | hypothetical protein | VF |
| E5CHR_RS31045 () | 1943..3028 | + | 1086 | WP_068682762.1 | ParB/RepB/Spo0J family partition protein | - |
| E5CHR_RS31050 () | 3279..4049 | - | 771 | WP_068682752.1 | IS21 family transposase IS1631 | Transposase |
| E5CHR_RS31055 () | 4046..5611 | - | 1566 | WP_068682754.1 | IS21 family transposase IS1631 | Transposase |
| E5CHR_RS31060 () | 6053..6310 | + | 258 | WP_068682756.1 | hypothetical protein | - |
| E5CHR_RS31065 () | 6320..8260 | + | 1941 | WP_068682758.1 | tyrosine-type recombinase/integrase | - |
| E5CHR_RS31070 () | 9059..9262 | - | 204 | Protein_6 | hypothetical protein | - |
| E5CHR_RS31075 () | 9307..10278 | - | 972 | WP_146039730.1 | IS3 family transposase ISMco1 | Transposase |
| E5CHR_RS31080 () | 10607..12145 | + | 1539 | WP_068685009.1 | IS3 family transposase ISBmu11 | Transposase |
| E5CHR_RS31085 () | 12427..13233 | - | 807 | WP_031652704.1 | IS21 family transposase ISPa64 | Transposase |
| E5CHR_RS31090 () | 13223..14788 | - | 1566 | WP_063599743.1 | IS21 family transposase ISPpn1 | Transposase |
| E5CHR_RS31095 () | 15119..16090 | + | 972 | WP_146039730.1 | IS3 family transposase ISMco1 | Transposase |
| E5CHR_RS31100 () | 16167..16376 | - | 210 | WP_102906381.1 | SWIB/MDM2 domain-containing protein | - |
| E5CHR_RS31105 () | 17083..17541 | - | 459 | WP_068685915.1 | hypothetical protein | - |
| E5CHR_RS31110 () | 17541..17717 | - | 177 | WP_157103529.1 | hypothetical protein | - |
| E5CHR_RS31115 () | 17943..20858 | - | 2916 | WP_003158660.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5CHR_RS31120 () | 20977..21624 | - | 648 | WP_159597438.1 | HTH-type transcriptional regulator TfdS | VF |
| E5CHR_RS31125 () | 22127..22873 | + | 747 | WP_068673263.1 | hypothetical protein | - |
| E5CHR_RS31130 () | 23257..24204 | + | 948 | WP_159597437.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| E5CHR_RS31135 () | 24506..24811 | + | 306 | WP_162584082.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| E5CHR_RS31140 () | 24825..25160 | + | 336 | WP_068673269.1 | hypothetical protein | - |
| E5CHR_RS31145 () | 25170..26249 | + | 1080 | WP_068673271.1 | maleylacetate reductase | - |
| E5CHR_RS31150 () | 26251..27429 | + | 1179 | WP_068673272.1 | muconate cycloisomerase family protein | - |
| E5CHR_RS31155 () | 27422..28120 | + | 699 | WP_068673274.1 | dienelactone hydrolase family protein | - |
| E5CHR_RS31160 () | 28572..28880 | + | 309 | WP_083944095.1 | LysR family transcriptional regulator | - |
| E5CHR_RS31165 () | 28926..29432 | - | 507 | WP_068673276.1 | hypothetical protein | - |
| E5CHR_RS31170 () | 29450..29854 | - | 405 | WP_159597436.1 | IS66 family transposase ISAba17 | Transposase |
| E5CHR_RS31175 () | 30003..31700 | - | 1698 | Protein_27 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5CHR_RS31180 () | 31880..33100 | - | 1221 | Protein_28 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5CHR_RS31185 () | 33315..34400 | - | 1086 | WP_159597432.1 | hypothetical protein | Relaxase |
| E5CHR_RS31190 () | 34387..34986 | - | 600 | WP_070697986.1 | hypothetical protein | Relaxase |
| E5CHR_RS31195 () | 35222..35764 | - | 543 | WP_159609098.1 | DUF192 domain-containing protein | - |
| E5CHR_RS31200 () | 35761..36903 | - | 1143 | WP_159597431.1 | ParB/RepB/Spo0J family partition protein | - |
| E5CHR_RS31205 () | 36903..37697 | - | 795 | WP_070697983.1 | ParA family protein | - |
| E5CHR_RS31210 () | 37704..38093 | - | 390 | WP_081340476.1 | hypothetical protein | - |
| E5CHR_RS31215 () | 38094..38450 | - | 357 | WP_070697982.1 | single-stranded DNA-binding protein | - |
| E5CHR_RS31220 () | 39184..40170 | - | 987 | WP_159597430.1 | RepB family DNA primase | - |
| E5CHR_RS31225 () | 40353..41318 | - | 966 | WP_159597461.1 | hypothetical protein | - |
| E5CHR_RS31230 () | 41425..41718 | - | 294 | WP_159597429.1 | hypothetical protein | - |
| E5CHR_RS31235 () | 41743..42138 | - | 396 | WP_070697979.1 | hypothetical protein | - |
| E5CHR_RS31240 () | 42142..42324 | - | 183 | WP_159597428.1 | hypothetical protein | - |
| E5CHR_RS31245 () | 42411..43217 | - | 807 | WP_159597427.1 | DUF3560 domain-containing protein | - |
| E5CHR_RS31250 () | 43278..43505 | - | 228 | WP_159597460.1 | stable inheritance protein KleA | - |
| E5CHR_RS31255 () | 44602..45123 | - | 522 | WP_159597426.1 | DNA repair protein RadC | - |
| E5CHR_RS31260 () | 45418..45633 | - | 216 | WP_046534443.1 | hypothetical protein | - |
| E5CHR_RS31265 () | 45643..46122 | - | 480 | WP_159597425.1 | thermonuclease family protein | - |
| E5CHR_RS31270 () | 46119..47330 | - | 1212 | WP_159597424.1 | plasmid encoded RepA protein | - |
| E5CHR_RS31275 () | 47327..47665 | - | 339 | WP_159597459.1 | hypothetical protein | - |
| E5CHR_RS31280 () | 47730..47945 | - | 216 | WP_046532838.1 | hypothetical protein | - |
| E5CHR_RS31285 () | 47963..48223 | - | 261 | WP_070697966.1 | hypothetical protein | - |
| E5CHR_RS31290 () | 48249..48515 | - | 267 | WP_070697965.1 | hypothetical protein | - |
| E5CHR_RS31295 () | 48534..48671 | - | 138 | WP_158014636.1 | hypothetical protein | - |
| E5CHR_RS31300 () | 48743..49096 | - | 354 | Protein_52 | hypothetical protein | - |
| E5CHR_RS31305 () | 49096..49299 | - | 204 | WP_046532840.1 | hypothetical protein | - |
| E5CHR_RS31310 () | 49310..49534 | - | 225 | WP_046532841.1 | hypothetical protein | - |
| E5CHR_RS31315 () | 49710..50237 | - | 528 | WP_159597458.1 | hypothetical protein | - |
| E5CHR_RS31320 () | 50295..50702 | - | 408 | WP_159597457.1 | hypothetical protein | - |
| E5CHR_RS31325 () | 50726..50929 | - | 204 | WP_159597456.1 | hypothetical protein | - |
| E5CHR_RS31330 () | 50958..51290 | - | 333 | WP_197893625.1 | hypothetical protein | - |
| E5CHR_RS31335 () | 52343..52714 | + | 372 | WP_081340480.1 | hypothetical protein | - |
| E5CHR_RS31340 () | 52766..53530 | + | 765 | WP_159597455.1 | hypothetical protein | VF |
| E5CHR_RS31345 () | 53542..55899 | + | 2358 | WP_159597454.1 | type I DNA topoisomerase | - |
| E5CHR_RS31350 () | 56065..56370 | + | 306 | WP_070698005.1 | Type IV secretion system protein virB2 | VF |
| E5CHR_RS31355 () | 56386..56709 | + | 324 | WP_046534567.1 | Type IV secretion system protein virB3 | VF |
| E5CHR_RS31360 () | 56719..59253 | + | 2535 | WP_159597453.1 | Type IV secretion system protein virB4 | VF |
| E5CHR_RS31365 () | 59258..59977 | + | 720 | WP_159597452.1 | Type IV secretion system protein virB5 | VF |
| E5CHR_RS31370 () | 60091..60399 | + | 309 | WP_070698001.1 | EexN family lipoprotein | - |
| E5CHR_RS31375 () | 60411..61496 | + | 1086 | WP_159597451.1 | Type IV secretion system protein VirB6 | VF |
| E5CHR_RS31380 () | 61642..61806 | + | 165 | WP_141762690.1 | conjugal transfer protein TraI | - |
| E5CHR_RS31385 () | 61809..62540 | + | 732 | WP_159597450.1 | Type IV secretion system protein virB8 | VF |
| E5CHR_RS31390 () | 62537..63415 | + | 879 | WP_046532891.1 | Type IV secretion system protein virB9 | VF |
| E5CHR_RS31395 () | 63412..64548 | + | 1137 | WP_046532890.1 | Type IV secretion system protein virB10 | VF |
| E5CHR_RS31400 () | 64526..65596 | + | 1071 | WP_159597449.1 | Type IV secretion system protein VirB11 | VF |
| E5CHR_RS31405 () | 65818..68412 | + | 2595 | WP_159597448.1 | hypothetical protein | VF |
| E5CHR_RS31410 () | 68523..69242 | + | 720 | WP_159597447.1 | hypothetical protein | - |
| E5CHR_RS31415 () | 69254..70651 | + | 1398 | WP_159609101.1 | hypothetical protein | - |
| E5CHR_RS31420 () | 70673..70897 | + | 225 | WP_070697993.1 | hypothetical protein | - |
| E5CHR_RS31425 () | 71398..71949 | + | 552 | WP_159597445.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| E5CHR_RS31430 () | 71963..72199 | + | 237 | WP_159597444.1 | hypothetical protein | - |
| E5CHR_RS31435 () | 72316..75231 | - | 2916 | WP_003158660.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5CHR_RS31440 () | 75379..76191 | - | 813 | Protein_80 | indolepyruvate oxidoreductase subunit beta family protein | - |
| E5CHR_RS31445 () | 76268..78616 | - | 2349 | WP_068685872.1 | indolepyruvate ferredoxin oxidoreductase subunit alpha | - |
| E5CHR_RS31450 () | 78894..79718 | + | 825 | WP_159597443.1 | hypothetical protein | - |
| E5CHR_RS31455 () | 79705..81459 | + | 1755 | WP_162584083.1 | amidohydrolase | - |
| E5CHR_RS31460 () | 81616..82401 | + | 786 | WP_083944710.1 | LuxR family transcriptional regulator | - |
| E5CHR_RS31465 () | 82475..83080 | + | 606 | WP_068683794.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| E5CHR_RS31470 () | 83077..83943 | + | 867 | WP_068683792.1 | phytanoyl-CoA dioxygenase family protein | - |
| E5CHR_RS31475 () | 84190..84699 | + | 510 | WP_068683790.1 | DUF2285 domain-containing protein | - |
| E5CHR_RS31480 () | 84708..84941 | - | 234 | WP_068683789.1 | helix-turn-helix transcriptional regulator | - |
| E5CHR_RS31485 () | 85016..85294 | + | 279 | WP_068683784.1 | hypothetical protein | - |
| E5CHR_RS31490 () | 85481..85711 | + | 231 | WP_083944709.1 | helix-turn-helix domain-containing protein | - |
| E5CHR_RS31495 () | 85641..86279 | + | 639 | WP_083944708.1 | S26 family signal peptidase | - |
| E5CHR_RS31500 () | 86267..86893 | + | 627 | WP_068683781.1 | lytic transglycosylase domain-containing protein | - |
| E5CHR_RS31505 () | 87139..90054 | - | 2916 | WP_003158660.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5CHR_RS31510 () | 90771..91052 | - | 282 | WP_011114071.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| E5CHR_RS31515 () | 91039..91302 | - | 264 | WP_011114070.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| E5CHR_RS31520 () | 91475..91903 | + | 429 | WP_011114069.1 | antirestriction protein | - |
| E5CHR_RS31525 () | 91903..92166 | + | 264 | WP_011296181.1 | hypothetical protein | - |
| E5CHR_RS31530 () | 92178..93386 | + | 1209 | WP_011114068.1 | hypothetical protein | - |
| E5CHR_RS31535 () | 93403..93660 | + | 258 | WP_011114067.1 | hypothetical protein | - |
| E5CHR_RS31540 () | 93818..94054 | + | 237 | WP_011114066.1 | stable inheritance protein KleA | - |
| E5CHR_RS31545 () | 94263..94589 | + | 327 | WP_011114065.1 | hypothetical protein | - |
| E5CHR_RS31550 () | 94591..94920 | + | 330 | WP_011114064.1 | DUF2761 domain-containing protein | - |
| E5CHR_RS31555 () | 95027..95335 | + | 309 | WP_011114062.1 | KorA protein | - |
| E5CHR_RS31560 () | 95332..96096 | + | 765 | WP_011114061.1 | ParA family protein | - |
| E5CHR_RS31565 () | 96093..97142 | + | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| E5CHR_RS31570 () | 97321..97686 | + | 366 | Protein_106 | DNA-binding protein | - |
| E5CHR_RS31575 () | 97829..100744 | - | 2916 | WP_003158660.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5CHR_RS31580 () | 101325..101906 | - | 582 | WP_068682744.1 | PIN domain-containing protein | - |
| E5CHR_RS31585 () | 101906..102313 | - | 408 | WP_102906383.1 | helix-turn-helix domain-containing protein | - |
| E5CHR_RS31590 () | 102888..104258 | - | 1371 | WP_068682748.1 | replication initiation protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|