MGE detailed information
MGE type: Conjugative plasmid MGE length: 71037 bp
Accession: NZ_LR594674 Location: 1..71037 Organism: Variovorax sp. PBL-E5 Replicon: plasmid 4
Accession: NZ_LR594674 Location: 1..71037 Organism: Variovorax sp. PBL-E5 Replicon: plasmid 4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WDLP6_RS34615 () | 1..870 | + | 870 | WP_015063508.1 | replication initiator protein A | - |
| WDLP6_RS34620 () | 1239..2345 | + | 1107 | WP_162572156.1 | hypothetical protein | - |
| WDLP6_RS34625 () | 2445..3473 | + | 1029 | WP_162572157.1 | DNA adenine methylase | - |
| WDLP6_RS34630 () | 3621..6536 | + | 2916 | WP_162590687.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| WDLP6_RS34635 () | 6687..7781 | + | 1095 | Protein_4 | IS91 family transposase ISAzo26 | Transposase |
| WDLP6_RS34640 () | 8633..10060 | - | 1428 | WP_162572158.1 | amidase | - |
| WDLP6_RS34645 () | 10147..11085 | - | 939 | WP_162572159.1 | hypothetical protein | VF |
| WDLP6_RS34650 () | 11939..13033 | - | 1095 | Protein_7 | IS91 family transposase ISAzo26 | Transposase |
| WDLP6_RS34655 () | 13184..16099 | - | 2916 | WP_162590687.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| WDLP6_RS34660 () | 16245..16763 | + | 519 | Protein_9 | IS21 family transposase ISCARN16 | Transposase |
| WDLP6_RS34665 () | 16939..17241 | - | 303 | WP_162572160.1 | phage integrase N-terminal SAM-like domain-containing protein | - |
| WDLP6_RS34670 () | 17459..17791 | + | 333 | WP_162572169.1 | quaternary ammonium compound efflux SMR transporter QacG2 | - |
| WDLP6_RS34675 () | 18101..18661 | + | 561 | WP_108499742.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| WDLP6_RS34680 () | 18664..21633 | + | 2970 | Protein_13 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| WDLP6_RS34685 () | 21958..22122 | + | 165 | WP_162572161.1 | hypothetical protein | - |
| WDLP6_RS34690 () | 22237..24243 | + | 2007 | Protein_15 | Tn3 family transposase TnpA_IS1071 | Transposase |
| WDLP6_RS34695 () | 24483..26009 | + | 1527 | WP_162572162.1 | IS21 family transposase ISCARN95 | Transposase |
| WDLP6_RS34700 () | 26048..26812 | + | 765 | WP_162572170.1 | IS21 family transposase ISCARN95 | Transposase |
| WDLP6_RS34705 () | 26906..27820 | + | 915 | Protein_18 | Tn3 family transposase TnpA_IS1071 | Transposase |
| WDLP6_RS34710 () | 28966..29250 | + | 285 | WP_015063519.1 | hypothetical protein | - |
| WDLP6_RS34715 () | 29347..29781 | + | 435 | WP_011171688.1 | antirestriction protein | - |
| WDLP6_RS34720 () | 30093..31235 | + | 1143 | WP_162572171.1 | klcB | - |
| WDLP6_RS34725 () | 31250..31507 | + | 258 | WP_011171686.1 | transcriptional repressor protein KorC | - |
| WDLP6_RS34730 () | 31698..31955 | + | 258 | WP_011171685.1 | stable inheritance protein KleA | - |
| WDLP6_RS34735 () | 32072..32395 | + | 324 | WP_075122821.1 | protein kleE | - |
| WDLP6_RS34740 () | 32397..32918 | + | 522 | WP_162572163.1 | DUF2761 domain-containing protein | - |
| WDLP6_RS34745 () | 33080..33388 | + | 309 | WP_015063537.1 | transcriptional regulator KorA | - |
| WDLP6_RS34750 () | 33385..34158 | + | 774 | WP_162572150.1 | Chromosome partitioning protein ParA | VF |
| WDLP6_RS34755 () | 34155..35228 | + | 1074 | WP_011171679.1 | ParB/RepB/Spo0J family partition protein | - |
| WDLP6_RS34760 () | 35423..36439 | + | 1017 | WP_011171678.1 | DNA-binding protein | - |
| WDLP6_RS34765 () | 36504..36692 | + | 189 | WP_011171677.1 | antitoxin VbhA family protein | Antitoxin Detail |
| WDLP6_RS34770 () | 36689..37297 | + | 609 | WP_011171676.1 | Fic/DOC family protein | Toxin Detail |
| WDLP6_RS34775 () | 37314..37658 | + | 345 | WP_015063536.1 | hypothetical protein | - |
| WDLP6_RS34780 () | 37710..38339 | + | 630 | WP_162572165.1 | hypothetical protein | - |
| WDLP6_RS34785 () | 38410..38847 | - | 438 | WP_011171734.1 | conjugal transfer protein TraM | - |
| WDLP6_RS34790 () | 38847..39572 | - | 726 | WP_011171733.1 | conjugal transfer protein TraL | - |
| WDLP6_RS34795 () | 39572..39970 | - | 399 | WP_011171732.1 | TraK family protein | - |
| WDLP6_RS34800 () | 40395..40751 | + | 357 | WP_162572166.1 | conjugal transfer transcriptional regulator TraJ | - |
| WDLP6_RS34805 () | 40786..42978 | + | 2193 | WP_015063533.1 | Protein TraI | Relaxase |
| WDLP6_RS34810 () | 42975..44888 | + | 1914 | WP_015063532.1 | Conjugal transfer protein TraG | VF |
| WDLP6_RS34815 () | 44885..45421 | + | 537 | WP_011171726.1 | conjugative transfer signal peptidase TraF | - |
| WDLP6_RS34820 () | 45430..47622 | + | 2193 | WP_011171725.1 | DNA topoisomerase 3 | - |
| WDLP6_RS34825 () | 47627..48004 | + | 378 | WP_011171724.1 | hypothetical protein | - |
| WDLP6_RS34830 () | 48008..52186 | + | 4179 | WP_162572151.1 | DUF1738 domain-containing protein | - |
| WDLP6_RS34835 () | 52501..53175 | + | 675 | WP_162572167.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| WDLP6_RS34840 () | 53367..55460 | + | 2094 | WP_162572168.1 | AAA family ATPase | - |
| WDLP6_RS34845 () | 55572..55676 | - | 105 | WP_197894043.1 | antitoxin VbhA family protein | - |
| WDLP6_RS34850 () | 55679..55981 | + | 303 | WP_197894044.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| WDLP6_RS34855 () | 55938..56345 | - | 408 | WP_031944013.1 | hypothetical protein | - |
| WDLP6_RS34860 () | 56342..56827 | - | 486 | WP_015063510.1 | thermonuclease family protein | - |
| WDLP6_RS34865 () | 56829..57254 | - | 426 | WP_053057113.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| WDLP6_RS34870 () | 57268..58068 | - | 801 | WP_162572152.1 | conjugal transfer protein TraX | - |
| WDLP6_RS34875 () | 57969..58232 | - | 264 | WP_162572153.1 | conjugal transfer protein TrbO | - |
| WDLP6_RS34880 () | 58258..58863 | - | 606 | WP_162572154.1 | hypothetical protein | VF |
| WDLP6_RS34885 () | 58877..59470 | - | 594 | WP_015063527.1 | TrbM Mating pair formation protein | - |
| WDLP6_RS34890 () | 59490..61223 | - | 1734 | WP_174259956.1 | P-type conjugative transfer protein TrbL | - |
| WDLP6_RS34895 () | 61234..61473 | - | 240 | WP_031944010.1 | entry exclusion lipoprotein TrbK | - |
| WDLP6_RS34900 () | 61484..62257 | - | 774 | WP_031944011.1 | P-type conjugative transfer protein TrbJ | - |
| WDLP6_RS34905 () | 62276..63670 | - | 1395 | WP_015063524.1 | TrbI/VirB10 family protein | - |
| WDLP6_RS34910 () | 63676..64143 | - | 468 | WP_015063523.1 | TrbH Mating pair formation protein | - |
| WDLP6_RS34915 () | 64146..65051 | - | 906 | WP_015063522.1 | P-type conjugative transfer protein TrbG | - |
| WDLP6_RS34920 () | 65064..65840 | - | 777 | WP_015063521.1 | conjugal transfer protein TrbF | - |
| WDLP6_RS34925 () | 65837..68374 | - | 2538 | WP_015063520.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| WDLP6_RS34930 () | 68371..68682 | - | 312 | WP_011171720.1 | conjugal transfer protein TrbD | - |
| WDLP6_RS34935 () | 68685..69113 | - | 429 | WP_011171719.1 | IncP-type conjugal transfer pilin TrbC | - |
| WDLP6_RS34940 () | 69125..70087 | - | 963 | WP_011171718.1 | Type IV secretion system protein PtlH | VF |
| WDLP6_RS34945 () | 70340..70717 | - | 378 | WP_011171717.1 | transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|