MGE detailed information
MGE type: Conjugative plasmid MGE length: 68393 bp
Accession: NZ_LR594665 Location: 1..68393 Organism: Variovorax sp. RA8 Replicon: plasmid 4
Accession: NZ_LR594665 Location: 1..68393 Organism: Variovorax sp. RA8 Replicon: plasmid 4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5P3_RS35300 () | 1..774 | + | 774 | WP_162572150.1 | Chromosome partitioning protein ParA | VF |
| E5P3_RS35305 () | 771..1844 | + | 1074 | WP_011171679.1 | ParB/RepB/Spo0J family partition protein | - |
| E5P3_RS35310 () | 2039..3055 | + | 1017 | WP_011171678.1 | DNA-binding protein | - |
| E5P3_RS35315 () | 3120..3308 | + | 189 | WP_011171677.1 | antitoxin VbhA family protein | Antitoxin Detail |
| E5P3_RS35320 () | 3305..3913 | + | 609 | WP_011171676.1 | Fic/DOC family protein | Toxin Detail |
| E5P3_RS35325 () | 3930..4274 | + | 345 | WP_015063536.1 | hypothetical protein | - |
| E5P3_RS35330 () | 4326..4955 | + | 630 | WP_162572165.1 | hypothetical protein | - |
| E5P3_RS35335 () | 5026..5463 | - | 438 | WP_011171734.1 | conjugal transfer protein TraM | - |
| E5P3_RS35340 () | 5463..6188 | - | 726 | WP_011171733.1 | conjugal transfer protein TraL | - |
| E5P3_RS35345 () | 6188..6586 | - | 399 | WP_011171732.1 | TraK family protein | - |
| E5P3_RS35350 () | 7011..7367 | + | 357 | WP_162572166.1 | conjugal transfer transcriptional regulator TraJ | - |
| E5P3_RS35355 () | 7402..9594 | + | 2193 | WP_015063533.1 | Protein TraI | Relaxase |
| E5P3_RS35360 () | 9591..11504 | + | 1914 | WP_015063532.1 | Conjugal transfer protein TraG | VF |
| E5P3_RS35365 () | 11501..12037 | + | 537 | WP_011171726.1 | conjugative transfer signal peptidase TraF | - |
| E5P3_RS35370 () | 12046..14238 | + | 2193 | WP_011171725.1 | DNA topoisomerase 3 | - |
| E5P3_RS35375 () | 14243..14620 | + | 378 | WP_011171724.1 | hypothetical protein | - |
| E5P3_RS35380 () | 14624..18802 | + | 4179 | WP_162572151.1 | DUF1738 domain-containing protein | - |
| E5P3_RS35385 () | 19141..19815 | + | 675 | WP_162572167.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| E5P3_RS35390 () | 20007..22100 | + | 2094 | WP_162572168.1 | AAA family ATPase | - |
| E5P3_RS35395 () | 22212..22316 | - | 105 | WP_197894043.1 | antitoxin VbhA family protein | - |
| E5P3_RS35400 () | 22319..22621 | + | 303 | WP_197894044.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| E5P3_RS35405 () | 22578..22985 | - | 408 | WP_031944013.1 | hypothetical protein | - |
| E5P3_RS35410 () | 22982..23467 | - | 486 | WP_015063510.1 | thermonuclease family protein | - |
| E5P3_RS35415 () | 23469..23894 | - | 426 | WP_053057113.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| E5P3_RS35420 () | 23908..24708 | - | 801 | WP_162572152.1 | conjugal transfer protein TraX | - |
| E5P3_RS35425 () | 24609..24872 | - | 264 | WP_162572153.1 | conjugal transfer protein TrbO | - |
| E5P3_RS35430 () | 24898..25503 | - | 606 | WP_162572154.1 | hypothetical protein | VF |
| E5P3_RS35435 () | 25517..26110 | - | 594 | WP_015063527.1 | TrbM Mating pair formation protein | - |
| E5P3_RS35440 () | 26130..27863 | - | 1734 | WP_174259956.1 | P-type conjugative transfer protein TrbL | - |
| E5P3_RS35445 () | 27874..28113 | - | 240 | WP_031944010.1 | entry exclusion lipoprotein TrbK | - |
| E5P3_RS35450 () | 28124..28897 | - | 774 | WP_031944011.1 | P-type conjugative transfer protein TrbJ | - |
| E5P3_RS35455 () | 28916..30310 | - | 1395 | WP_015063524.1 | TrbI/VirB10 family protein | - |
| E5P3_RS35460 () | 30316..30783 | - | 468 | WP_015063523.1 | TrbH Mating pair formation protein | - |
| E5P3_RS35465 () | 30786..31691 | - | 906 | WP_015063522.1 | P-type conjugative transfer protein TrbG | - |
| E5P3_RS35470 () | 31704..32480 | - | 777 | WP_015063521.1 | conjugal transfer protein TrbF | - |
| E5P3_RS35475 () | 32477..35014 | - | 2538 | WP_015063520.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| E5P3_RS35480 () | 35011..35322 | - | 312 | WP_011171720.1 | conjugal transfer protein TrbD | - |
| E5P3_RS35485 () | 35325..35753 | - | 429 | WP_011171719.1 | IncP-type conjugal transfer pilin TrbC | - |
| E5P3_RS35490 () | 35765..36727 | - | 963 | WP_011171718.1 | Type IV secretion system protein PtlH | VF |
| E5P3_RS35495 () | 36980..37357 | - | 378 | WP_011171717.1 | transcriptional regulator | - |
| E5P3_RS35500 () | 37678..38547 | + | 870 | WP_015063508.1 | replication initiator protein A | - |
| E5P3_RS35505 () | 38916..40022 | + | 1107 | WP_162572156.1 | hypothetical protein | - |
| E5P3_RS35510 () | 40122..41150 | + | 1029 | WP_162572157.1 | DNA adenine methylase | - |
| E5P3_RS35515 () | 41298..44213 | + | 2916 | WP_162590687.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5P3_RS35520 () | 44364..45458 | + | 1095 | Protein_44 | IS91 family transposase ISAzo26 | Transposase |
| E5P3_RS35525 () | 46310..47737 | - | 1428 | WP_162590688.1 | amidase | - |
| E5P3_RS35530 () | 47824..48762 | - | 939 | WP_162572159.1 | hypothetical protein | VF |
| E5P3_RS35535 () | 49616..50710 | - | 1095 | Protein_47 | IS91 family transposase ISAzo26 | Transposase |
| E5P3_RS35540 () | 50861..53776 | - | 2916 | WP_003158660.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5P3_RS35545 () | 53891..54055 | - | 165 | WP_162572161.1 | hypothetical protein | - |
| E5P3_RS35550 () | 54380..57349 | - | 2970 | Protein_50 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| E5P3_RS35555 () | 57352..57912 | - | 561 | WP_108499742.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| E5P3_RS35560 () | 58222..58554 | - | 333 | WP_162572169.1 | quaternary ammonium compound efflux SMR transporter QacG2 | - |
| E5P3_RS35565 () | 58772..59074 | + | 303 | WP_162572160.1 | phage integrase N-terminal SAM-like domain-containing protein | - |
| E5P3_RS35570 () | 59250..59768 | - | 519 | Protein_54 | IS21 family transposase ISCARN16 | Transposase |
| E5P3_RS35575 () | 59914..62829 | + | 2916 | WP_003158660.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| E5P3_RS35580 () | 63975..64259 | + | 285 | WP_015063519.1 | hypothetical protein | - |
| E5P3_RS35585 () | 64356..64790 | + | 435 | WP_011171688.1 | antirestriction protein | - |
| E5P3_RS35590 () | 65102..66244 | + | 1143 | WP_162572171.1 | klcB | - |
| E5P3_RS35595 () | 66259..66516 | + | 258 | WP_011171686.1 | transcriptional repressor protein KorC | - |
| E5P3_RS35600 () | 66707..66964 | + | 258 | WP_011171685.1 | stable inheritance protein KleA | - |
| E5P3_RS35605 () | 67081..67404 | + | 324 | WP_075122821.1 | protein kleE | - |
| E5P3_RS35610 () | 67406..67927 | + | 522 | WP_162572163.1 | DUF2761 domain-containing protein | - |
| E5P3_RS35615 () | 68089..68393 | + | 305 | WP_162572164.1 | transcriptional regulator KorA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|