MGE detailed information
MGE type: Conjugative plasmid MGE length: 91948 bp
Accession: NZ_LR213460 Location: 1..91948 Organism: Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 Replicon: plasmid 3
Accession: NZ_LR213460 Location: 1..91948 Organism: Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 Replicon: plasmid 3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
E0E38_RS24640 | 46..1077 | + | 1032 | WP_000907880.1 | plasmid replication initiator RepA | - |
E0E38_RS24655 | 1985..2269 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
E0E38_RS24660 | 2269..2544 | + | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
E0E38_RS24665 | 2650..2931 | + | 282 | WP_001105066.1 | hypothetical protein | - |
E0E38_RS24675 | 3122..3388 | - | 267 | WP_000627831.1 | hypothetical protein | - |
E0E38_RS24685 | 3626..4228 | - | 603 | WP_000517694.1 | ProQ/FINO family protein | - |
E0E38_RS24695 | 4582..5928 | + | 1347 | WP_130872907.1 | protein YagA | - |
E0E38_RS26195 | 6471..6773 | - | 303 | WP_001245884.1 | hypothetical protein | - |
E0E38_RS24710 | 6770..7396 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
E0E38_RS24715 | 7608..8879 | - | 1272 | WP_000457510.1 | Y-family DNA polymerase | - |
E0E38_RS24720 | 8879..9316 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
E0E38_RS24725 | 9313..9561 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
E0E38_RS24740 | 9980..10882 | + | 903 | WP_001330417.1 | DUF1281 domain-containing protein | - |
E0E38_RS24745 | 10879..11190 | + | 312 | WP_031935767.1 | hypothetical protein | - |
E0E38_RS24750 | 11266..11949 | + | 684 | WP_000086137.1 | DNA methylase | - |
E0E38_RS24755 | 11950..12171 | + | 222 | WP_001104873.1 | hypothetical protein | - |
E0E38_RS24760 | 12101..12619 | + | 519 | WP_223168556.1 | DUF1380 family protein | - |
E0E38_RS24765 | 12664..13434 | + | 771 | WP_001006204.1 | hypothetical protein | - |
E0E38_RS24780 | 13850..14275 | + | 426 | WP_001198900.1 | antirestriction protein | - |
E0E38_RS24785 | 14322..14744 | + | 423 | WP_000271688.1 | DUF1380 family protein | - |
E0E38_RS24790 | 14741..14932 | + | 192 | WP_001027516.1 | hypothetical protein | - |
E0E38_RS24800 | 15070..15351 | + | 282 | WP_154671919.1 | hypothetical protein | - |
E0E38_RS24810 | 15704..16231 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
E0E38_RS24815 | 16289..16522 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
E0E38_RS24820 | 16581..18539 | + | 1959 | WP_001145476.1 | ParB/RepB/Spo0J family partition protein | - |
E0E38_RS24825 | 18594..19028 | + | 435 | WP_000845903.1 | conjugation system SOS inhibitor PsiB | - |
E0E38_RS24830 | 19025..19744 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
E0E38_RS24835 | 19741..20337 | + | 597 | WP_000977995.1 | hypothetical protein | - |
E0E38_RS24845 | 20799..21299 | + | 501 | WP_000117631.1 | antirestriction protein ArdA | - |
E0E38_RS24860 | 22032..22466 | + | 435 | WP_000218862.1 | hypothetical protein | - |
E0E38_RS24865 | 22559..22825 | + | 267 | WP_001247860.1 | hypothetical protein | - |
E0E38_RS24870 | 23002..23391 | + | 390 | WP_000833767.1 | hypothetical protein | - |
E0E38_RS24875 | 23388..24302 | + | 915 | WP_000038329.1 | Recombination-promoting nuclease RpnA | VF |
E0E38_RS24880 | 24302..24547 | + | 246 | WP_001260884.1 | hypothetical protein | - |
E0E38_RS24885 | 24578..24829 | - | 252 | WP_000148291.1 | helix-turn-helix transcriptional regulator | - |
E0E38_RS24895 | 25410..26258 | + | 849 | WP_001077033.1 | DUF4942 domain-containing protein | - |
E0E38_RS24900 | 26344..26679 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
E0E38_RS24905 | 26912..27244 | + | 333 | WP_001291058.1 | plasmid mobilization protein MobA | - |
E0E38_RS24910 | 27256..29967 | + | 2712 | WP_000991387.1 | Protein TraI | Relaxase |
E0E38_RS24915 | 30035..30466 | + | 432 | WP_001335086.1 | cell envelope integrity TolA C-terminal domain-containing protein | - |
E0E38_RS24920 | 30816..31220 | + | 405 | Protein_40 | IS91 family transposase ISPps1 | Transposase |
E0E38_RS24925 | 31327..32058 | - | 732 | Protein_41 | hypothetical protein | ARG |
E0E38_RS24930 | 32093..35098 | - | 3006 | WP_001143772.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
E0E38_RS24935 | 35262..35819 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
E0E38_RS24940 | 36002..36862 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
E0E38_RS24945 | 37011..37118 | - | 108 | Protein_45 | aminoglycoside phosphotransferase family protein | - |
E0E38_RS24950 | 37118..37921 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
E0E38_RS24955 | 37982..38797 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
E0E38_RS24975 | 39661..41964 | - | 2304 | WP_000077663.1 | F-type conjugative transfer protein TrbC | - |
E0E38_RS24980 | 41945..43069 | - | 1125 | WP_000152378.1 | DsbC family protein | - |
E0E38_RS24985 | 43066..44373 | - | 1308 | WP_000121918.1 | IncI1-type conjugal transfer protein TrbA | - |
E0E38_RS26205 | 44711..44857 | + | 147 | WP_001346191.1 | hypothetical protein | - |
E0E38_RS26805 | 44910..45005 | + | 96 | WP_001388983.1 | DinQ-like type I toxin DqlB | - |
E0E38_RS26810 | 45594..45689 | + | 96 | WP_001388983.1 | DinQ-like type I toxin DqlB | - |
E0E38_RS26210 | 45752..45928 | - | 177 | WP_001054907.1 | hypothetical protein | - |
E0E38_RS25000 | 46078..46545 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
E0E38_RS25005 | 46705..47328 | + | 624 | WP_001155250.1 | helix-turn-helix domain-containing protein | - |
E0E38_RS25015 | 47526..47741 | - | 216 | WP_000266543.1 | hypothetical protein | - |
E0E38_RS25020 | 47745..48113 | - | 369 | WP_001345852.1 | hypothetical protein | - |
E0E38_RS25025 | 48125..48316 | - | 192 | WP_000751583.1 | hypothetical protein | - |
E0E38_RS25030 | 48404..48646 | - | 243 | WP_000650923.1 | hypothetical protein | - |
E0E38_RS25035 | 48976..49128 | + | 153 | WP_001335079.1 | Hok/Gef family protein | - |
E0E38_RS26675 | 49266..49778 | - | 513 | WP_001401993.1 | TnsA endonuclease N-terminal domain-containing protein | - |
E0E38_RS26680 | 49957..50856 | - | 900 | WP_001401994.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
E0E38_RS25045 | 51130..51780 | - | 651 | WP_001044247.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
E0E38_RS25050 | 51869..54034 | - | 2166 | WP_000691810.1 | DotA/TraY family protein | - |
E0E38_RS25055 | 54109..54678 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
E0E38_RS25060 | 54675..55880 | - | 1206 | WP_001189549.1 | conjugal transfer protein TraW | - |
E0E38_RS25065 | 55838..56458 | - | 621 | WP_021516921.1 | hypothetical protein | - |
E0E38_RS25070 | 56458..59502 | - | 3045 | WP_021516922.1 | hypothetical protein | - |
E0E38_RS25080 | 59797..60423 | - | 627 | WP_000785703.1 | hypothetical protein | - |
E0E38_RS26815 | 60530..60814 | - | 285 | WP_001353683.1 | hypothetical protein | - |
E0E38_RS25090 | 60838..61236 | - | 399 | WP_000088813.1 | hypothetical protein | - |
E0E38_RS25095 | 61283..61813 | - | 531 | WP_000987021.1 | conjugal transfer protein TraQ | - |
E0E38_RS25100 | 61810..62523 | - | 714 | WP_000787002.1 | conjugal transfer protein TraP | - |
E0E38_RS25105 | 62520..63857 | - | 1338 | WP_021516923.1 | conjugal transfer protein TraO | - |
E0E38_RS25110 | 63861..64835 | - | 975 | WP_000547386.1 | hypothetical protein | VF |
E0E38_RS25115 | 64846..65541 | - | 696 | WP_001287545.1 | DotI/IcmL family type IV secretion protein | - |
E0E38_RS25120 | 65553..65903 | - | 351 | WP_001056367.1 | hypothetical protein | - |
E0E38_RS25125 | 65920..69981 | - | 4062 | WP_000842456.1 | DUF5710 domain-containing protein | - |
E0E38_RS25130 | 70045..70335 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
E0E38_RS25135 | 70332..71480 | - | 1149 | WP_000775210.1 | putative protein YggR | VF |
E0E38_RS25140 | 71464..72300 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
E0E38_RS25145 | 72297..72755 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
E0E38_RS25150 | 72859..74061 | - | 1203 | WP_000979993.1 | conjugal transfer protein TraF | - |
E0E38_RS25155 | 74163..74984 | - | 822 | WP_000845373.1 | hypothetical protein | - |
E0E38_RS26690 | 75149..75343 | - | 195 | Protein_86 | integrase | - |
E0E38_RS25165 | 75457..76818 | - | 1362 | WP_001168171.1 | hypothetical protein | VF |
E0E38_RS25170 | 76836..77462 | - | 627 | WP_000939245.1 | prepilin peptidase | - |
E0E38_RS25175 | 77478..77963 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
E0E38_RS25180 | 78008..78544 | - | 537 | WP_000111534.1 | hypothetical protein | VF |
E0E38_RS25185 | 78606..79700 | - | 1095 | WP_000697158.1 | type II secretion system F family protein | - |
E0E38_RS25190 | 79702..81210 | - | 1509 | WP_000880805.1 | Toxin coregulated pilus biosynthesis protein T | VF |
E0E38_RS25195 | 81314..81772 | - | 459 | WP_000095885.1 | hypothetical protein | VF |
E0E38_RS25200 | 81762..83057 | - | 1296 | WP_000129882.1 | type 4b pilus protein PilO2 | - |
E0E38_RS25205 | 83078..84697 | - | 1620 | WP_001035565.1 | Outer membrane lipoprotein BfpB | VF |
E0E38_RS25210 | 84729..85142 | - | 414 | WP_124983997.1 | hypothetical protein | VF |
E0E38_RS25215 | 85170..86240 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
E0E38_RS25220 | 86467..86802 | - | 336 | WP_001335624.1 | hypothetical protein | - |
E0E38_RS25225 | 86918..87160 | - | 243 | WP_001271734.1 | PilI type IV pilus biogenesis protein | - |
E0E38_RS25230 | 87241..88935 | - | 1695 | WP_000482665.1 | flotillin family protein | - |
E0E38_RS25235 | 88962..89582 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
E0E38_RS25245 | 89849..90511 | - | 663 | WP_000154142.1 | hypothetical protein | - |
E0E38_RS25250 | 90652..91293 | - | 642 | WP_000335849.1 | transcription termination/antitermination NusG family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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