MGE detailed information
MGE type: Prophage MGE length: 69791 bp
Accession: NZ_LR213455 Location: 2456640..2526430 Organism: Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 Replicon: chromosome
Accession: NZ_LR213455 Location: 2456640..2526430 Organism: Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0E35_RS12665 () | 2451707..2452507 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| E0E35_RS12670 () | 2452520..2453371 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| E0E35_RS12675 () | 2453426..2453902 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| E0E35_RS12680 () | 2453931..2454628 | + | 698 | WP_227804321.1 | IS1 family transposase | - |
| E0E35_RS12685 () | 2455091..2455657 | + | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| E0E35_RS12690 () | 2455654..2456463 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| E0E35_RS12695 () | 2456640..2456864 | - | 225 | WP_134797798.1 | transcription antiterminator/RNA stability regulator CspE | - |
| E0E35_RS12700 () | 2456877..2457020 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| E0E35_RS12705 () | 2457690..2457977 | - | 288 | WP_001006860.1 | YebO family protein | - |
| E0E35_RS12710 () | 2458052..2458195 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| E0E35_RS12715 () | 2458354..2458593 | + | 240 | WP_001211010.1 | YobH family protein | - |
| E0E35_RS12720 () | 2458736..2459527 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| E0E35_RS12725 () | 2459704..2461077 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| E0E35_RS12730 () | 2461123..2462004 | - | 882 | WP_000984517.1 | protease HtpX | - |
| E0E35_RS12735 () | 2462196..2464244 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| E0E35_RS12740 () | 2464264..2464962 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| E0E35_RS12745 () | 2465059..2465556 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| E0E35_RS12750 () | 2465686..2466969 | + | 1284 | WP_112324878.1 | membrane integrity lipid transport subunit YebS | - |
| E0E35_RS12755 () | 2466938..2469558 | + | 2621 | Protein_2424 | Intermembrane transport protein YebT | VF |
| E0E35_RS12760 () | 2469638..2471077 | + | 1440 | Protein_2425 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E0E35_RS12765 () | 2471195..2471431 | + | 237 | WP_001295499.1 | YebV family protein | - |
| E0E35_RS12770 () | 2471536..2471727 | + | 192 | WP_005049838.1 | YebW family protein | - |
| E0E35_RS12775 () | 2471752..2471940 | - | 189 | Protein_2428 | serine/threonine-protein phosphatase | - |
| E0E35_RS12785 () | 2473205..2473651 | - | 447 | Protein_2430 | metallophosphoesterase | - |
| E0E35_RS12800 () | 2475170..2476885 | + | 1716 | WP_128568580.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| E0E35_RS12810 () | 2477065..2477688 | - | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| E0E35_RS26130 () | 2477639..2477806 | - | 168 | Protein_2434 | IS66 family transposase ISSfl3 | Transposase |
| E0E35_RS26135 () | 2477808..2478188 | - | 381 | Protein_2435 | IS66 family transposase ISSfl3 | Transposase |
| E0E35_RS12820 () | 2479412..2480300 | + | 889 | Protein_2436 | Rha family transcriptional regulator | - |
| E0E35_RS12825 () | 2480297..2481570 | + | 1274 | WP_094105053.1 | IS3 family transposase IS2 | Transposase |
| E0E35_RS12830 () | 2481647..2481868 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| E0E35_RS12835 () | 2481868..2482038 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| E0E35_RS12840 () | 2482113..2482388 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| E0E35_RS12845 () | 2482488..2483903 | + | 1416 | Protein_2441 | exodeoxyribonuclease VIII | - |
| E0E35_RS12850 () | 2483960..2485116 | - | 1157 | Protein_2442 | IS3 family transposase IS600 | Transposase |
| E0E35_RS12855 () | 2485215..2485475 | + | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| E0E35_RS12860 () | 2485481..2485837 | + | 357 | WP_232111817.1 | hypothetical protein | - |
| E0E35_RS12865 () | 2485879..2487107 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| E0E35_RS26140 () | 2487132..2487914 | + | 783 | WP_232111823.1 | hypothetical protein | - |
| E0E35_RS12880 () | 2487989..2489198 | + | 1210 | Protein_2447 | IS3 family transposase IS629 | Transposase |
| E0E35_RS12885 () | 2489246..2489413 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| E0E35_RS12890 () | 2489415..2489585 | + | 171 | Protein_2449 | DUF3596 domain-containing protein | - |
| E0E35_RS12900 () | 2490353..2490994 | + | 642 | Protein_2451 | Putative defective protein IntQ ; Integrase | Integrase |
| E0E35_RS12905 () | 2491426..2492340 | + | 915 | WP_000555620.1 | putative periplasmic iron-binding protein | VF |
| E0E35_RS12910 () | 2492340..2493167 | + | 828 | WP_000983722.1 | Manganese transport system ATP-binding protein MntB | VF |
| E0E35_RS12915 () | 2493164..2494021 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| E0E35_RS12920 () | 2494018..2494875 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| E0E35_RS12925 () | 2495076..2495699 | - | 624 | WP_112324894.1 | DUF4376 domain-containing protein | - |
| E0E35_RS12930 () | 2495650..2496918 | - | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| E0E35_RS12935 () | 2496942..2497486 | - | 545 | Protein_2458 | tail fiber assembly protein | - |
| E0E35_RS12945 () | 2497510..2497878 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| E0E35_RS12950 () | 2497906..2498811 | - | 906 | Protein_2460 | IS3 family transposase ISSd1 | Transposase |
| E0E35_RS12960 () | 2499583..2499735 | - | 153 | Protein_2462 | Rha family transcriptional regulator | - |
| E0E35_RS12965 () | 2500113..2500601 | - | 489 | Protein_2463 | IS3 family transposase ISLad1 | Transposase |
| E0E35_RS12970 () | 2500682..2502190 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| E0E35_RS12980 () | 2502863..2503443 | - | 581 | Protein_2465 | IS3-like element IS911 family transposase | - |
| E0E35_RS12985 () | 2503474..2505045 | - | 1572 | WP_000381321.1 | IS66 family transposase ISCro1 | Transposase |
| E0E35_RS12990 () | 2505065..2505412 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| E0E35_RS12995 () | 2505412..2506089 | - | 678 | WP_001340280.1 | IS66 family transposase ISCro1 | Transposase |
| E0E35_RS13000 () | 2506142..2506258 | - | 117 | Protein_2469 | IS3 family transposase IS911 | Transposase |
| E0E35_RS13005 () | 2507080..2508684 | - | 1605 | WP_000615491.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| E0E35_RS13035 () | 2509318..2509878 | - | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| E0E35_RS13045 () | 2511089..2511262 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| E0E35_RS13050 () | 2511415..2511969 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| E0E35_RS13055 () | 2511966..2512256 | - | 291 | WP_073828270.1 | DUF1364 domain-containing protein | - |
| E0E35_RS13060 () | 2512256..2512855 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| E0E35_RS13065 () | 2512989..2513686 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| E0E35_RS13075 () | 2514192..2514347 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2514359..2514417 | + | 59 | - | - | Antitoxin Detail |
| E0E35_RS13080 () | 2514802..2515167 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| E0E35_RS13085 () | 2515167..2515832 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| E0E35_RS13090 () | 2515829..2516194 | - | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| E0E35_RS13095 () | 2516196..2516414 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| E0E35_RS13100 () | 2516507..2516863 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| E0E35_RS13105 () | 2516921..2517343 | - | 423 | WP_001118168.1 | DUF977 family protein | - |
| E0E35_RS13110 () | 2517358..2518104 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| E0E35_RS26760 () | 2518250..2518419 | - | 170 | Protein_2486 | hypothetical protein | - |
| E0E35_RS13120 () | 2518898..2520171 | + | 1274 | WP_094105053.1 | IS3 family transposase IS2 | Transposase |
| E0E35_RS13125 () | 2520185..2520595 | - | 411 | Protein_2488 | YdaU family protein | - |
| E0E35_RS13130 () | 2520699..2521855 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| E0E35_RS13135 () | 2521900..2522334 | - | 435 | Protein_2490 | HTH-type transcriptional regulator PgrR | VF |
| E0E35_RS13140 () | 2522472..2523392 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| E0E35_RS26150 () | 2523392..2523751 | + | 360 | Protein_2492 | alpha/beta hydrolase | - |
| E0E35_RS13150 () | 2523768..2524964 | - | 1197 | WP_005084161.1 | IS110 family transposase ISEc20 | Transposase |
| E0E35_RS13155 () | 2525193..2525774 | + | 582 | Protein_2494 | alpha/beta hydrolase | - |
| E0E35_RS13160 () | 2525792..2526430 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| E0E35_RS13165 () | 2526721..2527449 | + | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| E0E35_RS13170 () | 2527424..2528389 | - | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| E0E35_RS13175 () | 2528508..2529014 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| E0E35_RS13180 () | 2529058..2530599 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|