MGE detailed information
MGE type: Prophage MGE length: 83377 bp
Accession: NZ_LR213452 Location: 3034717..3118093 Organism: Shigella flexneri strain AUSMDU00008355 isolate AUSMDU00008355 Replicon: chromosome
Accession: NZ_LR213452 Location: 3034717..3118093 Organism: Shigella flexneri strain AUSMDU00008355 isolate AUSMDU00008355 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0E33_RS15760 () | 3031027..3031704 | - | 678 | WP_000044868.1 | dethiobiotin synthase | - |
| E0E33_RS15765 () | 3031697..3032452 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| E0E33_RS15770 () | 3032439..3033593 | - | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| E0E33_RS15775 () | 3033590..3034630 | - | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| E0E33_RS15780 () | 3034717..3036006 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| E0E33_RS15785 () | 3036065..3036541 | + | 477 | WP_000767391.1 | kinase inhibitor | - |
| E0E33_RS15795 () | 3036946..3037032 | - | 87 | Protein_3008 | transposase | - |
| E0E33_RS15800 () | 3037124..3038887 | + | 1764 | WP_000801162.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| E0E33_RS15810 () | 3039067..3039690 | - | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| E0E33_RS15815 () | 3039641..3041056 | - | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| E0E33_RS15820 () | 3041120..3041719 | - | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| E0E33_RS15825 () | 3041787..3045267 | - | 3481 | Protein_3013 | host specificity protein J | - |
| E0E33_RS15830 () | 3045328..3045930 | - | 603 | WP_000090877.1 | tail assembly protein | - |
| E0E33_RS15835 () | 3045867..3046610 | - | 744 | WP_075332705.1 | C40 family peptidase | - |
| E0E33_RS15840 () | 3046615..3047313 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| E0E33_RS15845 () | 3047313..3047642 | - | 330 | WP_000447264.1 | phage tail protein | - |
| E0E33_RS15850 () | 3047642..3050380 | - | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| E0E33_RS15855 () | 3050352..3050681 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| E0E33_RS15860 () | 3050690..3051076 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| E0E33_RS15865 () | 3051135..3051875 | - | 741 | WP_000211126.1 | Ig-like domain-containing protein | - |
| E0E33_RS15870 () | 3051886..3052287 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| E0E33_RS15875 () | 3052284..3052868 | - | 585 | WP_000677140.1 | phage tail protein | - |
| E0E33_RS15880 () | 3052855..3053232 | - | 378 | WP_000348593.1 | tail attachment protein | - |
| E0E33_RS15885 () | 3053244..3053630 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| E0E33_RS15890 () | 3053682..3054710 | - | 1029 | WP_000522637.1 | major capsid protein | - |
| E0E33_RS15895 () | 3054768..3055115 | - | 348 | WP_000256830.1 | head decoration protein | - |
| E0E33_RS15900 () | 3055152..3056657 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| E0E33_RS15905 () | 3056647..3058240 | - | 1594 | Protein_3029 | phage portal protein | - |
| E0E33_RS15910 () | 3058237..3058440 | - | 204 | WP_000259004.1 | head-tail joining protein | - |
| E0E33_RS15915 () | 3058424..3060352 | - | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| E0E33_RS15920 () | 3060324..3060632 | - | 309 | Protein_3032 | terminase small subunit | - |
| E0E33_RS15925 () | 3060675..3061714 | - | 1040 | Protein_3033 | IS3 family transposase IS600 | Transposase |
| E0E33_RS15930 () | 3061770..3062979 | + | 1210 | Protein_3034 | IS3 family transposase IS629 | Transposase |
| E0E33_RS15935 () | 3063031..3064037 | + | 1007 | Protein_3035 | IS3 family transposase ISSfl10 | Transposase |
| E0E33_RS15940 () | 3064081..3064260 | - | 180 | Protein_3036 | Rha family transcriptional regulator | - |
| E0E33_RS24060 () | 3064463..3064930 | - | 468 | WP_000092287.1 | lysis protein | - |
| E0E33_RS15950 () | 3064927..3065460 | - | 534 | WP_001274722.1 | lysozyme | - |
| E0E33_RS15955 () | 3065526..3066155 | - | 630 | WP_005094817.1 | hypothetical protein | - |
| E0E33_RS15960 () | 3066159..3066374 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| E0E33_RS15985 () | 3067177..3067557 | - | 381 | WP_001204832.1 | antitermination protein | - |
| E0E33_RS15990 () | 3067550..3067750 | - | 201 | WP_000111769.1 | protein ninH | - |
| E0E33_RS15995 () | 3067845..3068102 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| E0E33_RS16000 () | 3068099..3069490 | - | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| E0E33_RS16005 () | 3069487..3070365 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| E0E33_RS16010 () | 3070376..3071284 | - | 909 | WP_001247840.1 | hypothetical protein | - |
| E0E33_RS16015 () | 3071271..3071504 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| E0E33_RS16020 () | 3071501..3072517 | - | 1017 | Protein_3048 | Rha family transcriptional regulator | - |
| E0E33_RS16025 () | 3072443..3072712 | + | 270 | WP_130862220.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| E0E33_RS16030 () | 3072702..3073010 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| E0E33_RS16035 () | 3073052..3073228 | - | 177 | WP_001252556.1 | NinE family protein | - |
| E0E33_RS16040 () | 3073225..3073635 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| E0E33_RS16050 () | 3074898..3075005 | - | 108 | WP_075332776.1 | lysozyme | - |
| E0E33_RS16055 () | 3075005..3075133 | - | 129 | Protein_3055 | holin | - |
| E0E33_RS16060 () | 3075198..3076327 | + | 1130 | WP_130862222.1 | IS3 family transposase ISSfl10 | Transposase |
| E0E33_RS16065 () | 3076428..3077309 | + | 882 | WP_024219169.1 | hypothetical protein ; Integrase | Integrase |
| E0E33_RS16070 () | 3077444..3078727 | + | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| E0E33_RS16075 () | 3078868..3081048 | - | 2181 | WP_000593952.1 | hydratase | - |
| E0E33_RS16080 () | 3081231..3082664 | - | 1434 | WP_001036462.1 | anion permease | - |
| E0E33_RS16085 () | 3082740..3083792 | - | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| E0E33_RS16090 () | 3083976..3084929 | + | 954 | Protein_3062 | LysR family transcriptional regulator | - |
| E0E33_RS16095 () | 3084970..3085965 | - | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| E0E33_RS16100 () | 3086225..3086356 | - | 132 | WP_005061694.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| E0E33_RS16105 () | 3086847..3088673 | + | 1827 | WP_011110560.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| E0E33_RS16110 () | 3088674..3088853 | - | 180 | WP_001039888.1 | hypothetical protein | - |
| E0E33_RS16115 () | 3088853..3089470 | - | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| E0E33_RS16120 () | 3089536..3090692 | + | 1157 | WP_128599167.1 | IS3 family transposase IS600 | Transposase |
| E0E33_RS16125 () | 3090703..3090935 | + | 233 | Protein_3069 | hypothetical protein | - |
| E0E33_RS16130 () | 3091035..3091229 | + | 195 | Protein_3070 | hypothetical protein | - |
| E0E33_RS16140 () | 3092482..3092913 | + | 432 | Protein_3072 | exonuclease VIII | - |
| E0E33_RS16150 () | 3094301..3094582 | - | 282 | WP_001069001.1 | hypothetical protein | - |
| E0E33_RS16155 () | 3094599..3095447 | - | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| E0E33_RS16160 () | 3095995..3097223 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| E0E33_RS16165 () | 3097208..3097747 | + | 540 | WP_005098291.1 | hypothetical protein | - |
| E0E33_RS24065 () | 3097735..3097968 | + | 234 | WP_005020049.1 | hypothetical protein | - |
| E0E33_RS16170 () | 3097968..3099434 | + | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| E0E33_RS16175 () | 3099325..3100068 | + | 744 | WP_000184977.1 | minor capsid protein | - |
| E0E33_RS16180 () | 3100072..3101292 | + | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| E0E33_RS16185 () | 3101296..3101785 | + | 490 | Protein_3082 | hypothetical protein | - |
| E0E33_RS16190 () | 3101797..3102738 | + | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| E0E33_RS24070 () | 3102735..3103010 | - | 276 | WP_011069283.1 | hypothetical protein | - |
| E0E33_RS16205 () | 3104243..3105874 | - | 1632 | Protein_3086 | Mu transposase C-terminal domain-containing protein | - |
| E0E33_RS16210 () | 3105849..3106094 | - | 246 | WP_077696331.1 | helix-turn-helix domain-containing protein | - |
| E0E33_RS16215 () | 3106257..3106766 | + | 510 | WP_000833599.1 | DNA-binding protein | - |
| E0E33_RS16220 () | 3107104..3107445 | + | 342 | Protein_3089 | response regulator | - |
| E0E33_RS16225 () | 3107486..3108871 | - | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| E0E33_RS16230 () | 3109459..3110019 | + | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| E0E33_RS16235 () | 3110194..3110403 | + | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| E0E33_RS16240 () | 3110456..3110839 | - | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| E0E33_RS16245 () | 3110932..3111720 | + | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| E0E33_RS16250 () | 3111849..3112052 | + | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| E0E33_RS16255 () | 3112153..3113118 | - | 966 | WP_000042632.1 | lipoyl synthase | - |
| E0E33_RS16260 () | 3113327..3114280 | - | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| E0E33_RS16265 () | 3114539..3115180 | - | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| E0E33_RS16270 () | 3115281..3115544 | - | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| E0E33_RS16275 () | 3115655..3116866 | - | 1212 | WP_001092085.1 | D-alanyl-D-alanine carboxypeptidase DacA | - |
| E0E33_RS16280 () | 3117005..3118093 | - | 1089 | WP_001231406.1 | endolytic peptidoglycan transglycosylase RlpA | - |
| E0E33_RS16285 () | 3118104..3119216 | - | 1113 | WP_000131719.1 | peptidoglycan glycosyltransferase MrdB | - |
| E0E33_RS16290 () | 3119219..3121120 | - | 1902 | WP_000776197.1 | peptidoglycan DD-transpeptidase MrdA | - |
| E0E33_RS16295 () | 3121151..3121618 | - | 468 | WP_000776104.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| E0E33_RS16300 () | 3121622..3121939 | - | 318 | WP_001161664.1 | ribosome silencing factor | - |
| E0E33_RS16305 () | 3122199..3122801 | - | 603 | WP_075332657.1 | adenosylcobalamin/alpha-ribazole phosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|