MGE detailed information
MGE type: Prophage MGE length: 60805 bp
Accession: NZ_LR134222 Location: 2258717..2319521 Organism: Escherichia coli strain NCTC11129 Replicon: chromosome
Accession: NZ_LR134222 Location: 2258717..2319521 Organism: Escherichia coli strain NCTC11129 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL113_RS11110 () | 2254615..2255835 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| EL113_RS11115 () | 2255960..2256655 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| EL113_RS11120 () | 2256608..2257900 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| EL113_RS11125 () | 2258060..2258674 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| EL113_RS11130 () | 2258717..2259571 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit | - |
| EL113_RS11135 () | 2259573..2260190 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| EL113_RS11140 () | 2260201..2262624 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| EL113_RS11145 () | 2262685..2265111 | - | 2427 | WP_000041535.1 | dimethyl sulfoxide reductase subunit A | - |
| EL113_RS11150 () | 2265310..2265615 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| EL113_RS11155 () | 2265723..2266433 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| EL113_RS11160 () | 2266436..2266996 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| EL113_RS11165 () | 2267031..2267372 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| EL113_RS11170 () | 2267507..2267833 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| EL113_RS11175 () | 2268039..2269253 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| EL113_RS11180 () | 2269265..2270283 | + | 1019 | Protein_2147 | Zn-dependent oxidoreductase | - |
| EL113_RS11190 () | 2270471..2271750 | - | 1280 | Protein_2148 | Putative defective protein IntQ ; Integrase | Integrase |
| EL113_RS11195 () | 2271785..2272036 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| EL113_RS11200 () | 2272109..2274580 | - | 2472 | WP_021511903.1 | exonuclease | - |
| EL113_RS11205 () | 2274674..2274865 | - | 192 | WP_001083280.1 | lysis protein YdfD | - |
| EL113_RS11210 () | 2274862..2275050 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| EL113_RS11220 () | 2275618..2275835 | - | 218 | Protein_2153 | hypothetical protein | - |
| EL113_RS11225 () | 2275995..2276150 | - | 156 | WP_000379578.1 | DUF1391 family protein | - |
| EL113_RS11230 () | 2276319..2276726 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| EL113_RS11235 () | 2276807..2277034 | + | 228 | WP_000921596.1 | transcriptional regulator | - |
| EL113_RS11240 () | 2277018..2277539 | + | 522 | WP_000705355.1 | hypothetical protein | - |
| EL113_RS11245 () | 2277520..2278485 | + | 966 | WP_000054509.1 | hypothetical protein | - |
| EL113_RS11250 () | 2278526..2278948 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| EL113_RS11255 () | 2278945..2279301 | + | 357 | WP_001374839.1 | class I SAM-dependent methyltransferase | - |
| EL113_RS24915 () | 2279912..2280199 | + | 288 | Protein_2161 | hypothetical protein | - |
| EL113_RS11270 () | 2280968..2282309 | + | 1342 | Protein_2162 | ISNCY family transposase ISCARN112 | Transposase |
| EL113_RS11275 () | 2282746..2283078 | - | 333 | WP_001317460.1 | FlxA-like family protein | - |
| EL113_RS11280 () | 2283281..2283586 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| EL113_RS11285 () | 2283611..2283850 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EL113_RS11290 () | 2283850..2284137 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EL113_RS11295 () | 2284209..2284364 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EL113_RS11300 () | 2284581..2284832 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| EL113_RS11305 () | 2284899..2285177 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| EL113_RS11310 () | 2285179..2286228 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| EL113_RS11315 () | 2286242..2286994 | + | 753 | WP_001047135.1 | antitermination protein | - |
| EL113_RS11320 () | 2287272..2287361 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| EL113_RS11325 () | 2287416..2287628 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| EL113_RS11330 () | 2287929..2288144 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| EL113_RS25045 () | 2288508..2288678 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| EL113_RS11335 () | 2288898..2289113 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| EL113_RS11340 () | 2289118..2289429 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| EL113_RS11345 () | 2289426..2289959 | + | 534 | WP_001092971.1 | lysozyme | - |
| EL113_RS11350 () | 2289956..2290453 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| EL113_RS11355 () | 2290816..2291028 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| EL113_RS11360 () | 2291039..2291227 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| EL113_RS11365 () | 2291230..2291295 | + | 66 | WP_122134696.1 | hypothetical protein | - |
| EL113_RS11370 () | 2291375..2291530 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| EL113_RS11375 () | 2291702..2291875 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| EL113_RS11380 () | 2292027..2292437 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| EL113_RS11385 () | 2292495..2292728 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| EL113_RS11390 () | 2293117..2293662 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| EL113_RS11395 () | 2293637..2295562 | + | 1926 | WP_001027295.1 | phage terminase large subunit family protein | - |
| EL113_RS11400 () | 2295559..2295765 | + | 207 | WP_000198149.1 | gpW family protein | - |
| EL113_RS11405 () | 2295762..2297363 | + | 1602 | WP_001345555.1 | phage portal protein | - |
| EL113_RS11410 () | 2297344..2298663 | + | 1320 | WP_000123317.1 | S49 family peptidase | - |
| EL113_RS11415 () | 2298673..2299005 | + | 333 | WP_001358225.1 | head decoration protein | - |
| EL113_RS11420 () | 2299061..2300086 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| EL113_RS11425 () | 2300128..2300523 | + | 396 | WP_000158870.1 | DNA-packaging protein FI | - |
| EL113_RS11430 () | 2300535..2300888 | + | 354 | WP_020244989.1 | head-tail joining protein | - |
| EL113_RS11435 () | 2300900..2301478 | + | 579 | WP_000975081.1 | phage tail protein | - |
| EL113_RS11440 () | 2301475..2301870 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| EL113_RS11445 () | 2301878..2302618 | + | 741 | WP_001543784.1 | phage tail protein | - |
| EL113_RS11450 () | 2302634..2303056 | + | 423 | WP_000479135.1 | phage minor tail protein G | - |
| EL113_RS11455 () | 2303038..2303472 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| EL113_RS11460 () | 2303465..2306044 | + | 2580 | WP_000840337.1 | phage tail tape measure protein | - |
| EL113_RS11465 () | 2306041..2306370 | + | 330 | WP_000847331.1 | phage tail protein | - |
| EL113_RS11470 () | 2306370..2307068 | + | 699 | WP_001152624.1 | phage minor tail protein L | - |
| EL113_RS11475 () | 2307074..2307817 | + | 744 | WP_000194780.1 | C40 family peptidase | - |
| EL113_RS11480 () | 2307754..2308386 | + | 633 | WP_000090891.1 | tail assembly protein | - |
| EL113_RS11485 () | 2308447..2311944 | + | 3498 | WP_126495076.1 | host specificity protein J | - |
| EL113_RS11490 () | 2312015..2312614 | + | 600 | WP_001233090.1 | Outer membrane protein X | VF |
| EL113_RS11495 () | 2312679..2315639 | + | 2961 | WP_024190505.1 | prophage tail fiber N-terminal domain-containing protein | - |
| EL113_RS11500 () | 2315639..2316214 | + | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| EL113_RS11505 () | 2316312..2316902 | - | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| EL113_RS11510 () | 2317219..2317452 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| EL113_RS11515 () | 2317521..2317634 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| EL113_RS11520 () | 2318238..2319521 | + | 1284 | Protein_2213 | MHS family MFS transporter YdfJ | - |
| EL113_RS11525 () | 2319610..2321070 | + | 1461 | WP_000527753.1 | mannitol dehydrogenase family protein | - |
| EL113_RS11530 () | 2321106..2321309 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EL113_RS11535 () | 2321487..2322173 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| EL113_RS11540 () | 2322262..2323008 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|