MGE detailed information
MGE type: Prophage MGE length: 41640 bp
Accession: NZ_LR134152 Location: 2256734..2298373 Organism: Escherichia coli strain NCTC9104 Replicon: chromosome
Accession: NZ_LR134152 Location: 2256734..2298373 Organism: Escherichia coli strain NCTC9104 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL040_RS10960 () | 2252634..2253853 | + | 1220 | Protein_2127 | DNA-binding transcriptional repressor Mlc | - |
| EL040_RS10965 () | 2253978..2254673 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| EL040_RS10970 () | 2254626..2255918 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| EL040_RS10975 () | 2256077..2256691 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| EL040_RS10980 () | 2256734..2257588 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| EL040_RS10985 () | 2257590..2258207 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| EL040_RS10990 () | 2258218..2260641 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| EL040_RS10995 () | 2260702..2263127 | - | 2426 | Protein_2134 | dimethyl sulfoxide reductase subunit A | - |
| EL040_RS11000 () | 2263326..2263631 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| EL040_RS11005 () | 2263739..2264449 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| EL040_RS11010 () | 2264452..2265012 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| EL040_RS11015 () | 2265047..2265388 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| EL040_RS11020 () | 2265523..2265849 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| EL040_RS11025 () | 2266055..2267269 | + | 1215 | WP_088544582.1 | starvation-sensing protein RspA | - |
| EL040_RS11030 () | 2267281..2268300 | + | 1020 | Protein_2141 | Zn-dependent oxidoreductase | - |
| EL040_RS11040 () | 2268488..2269768 | - | 1281 | WP_126350646.1 | Putative defective protein IntQ ; Integrase | Integrase |
| EL040_RS11045 () | 2269803..2270054 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| EL040_RS11050 () | 2270127..2272108 | - | 1982 | Protein_2144 | 3'-5' exoribonuclease | - |
| EL040_RS11055 () | 2272098..2272349 | + | 252 | Protein_2145 | DUF977 family protein | - |
| EL040_RS11060 () | 2272346..2272702 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| EL040_RS22950 () | 2273313..2273600 | + | 288 | Protein_2147 | hypothetical protein | - |
| EL040_RS11075 () | 2274369..2275682 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| EL040_RS11080 () | 2276119..2276451 | - | 333 | WP_001301033.1 | protein FlxA | - |
| EL040_RS11085 () | 2276654..2276959 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| EL040_RS11090 () | 2276984..2277223 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EL040_RS11095 () | 2277223..2277510 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EL040_RS11100 () | 2277582..2277737 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EL040_RS11105 () | 2277954..2278205 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| EL040_RS11110 () | 2278272..2278550 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| EL040_RS11115 () | 2278552..2279601 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| EL040_RS11120 () | 2279615..2280367 | + | 753 | WP_001047135.1 | antitermination protein | - |
| EL040_RS11125 () | 2280645..2280734 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| EL040_RS11130 () | 2280789..2281001 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| EL040_RS11135 () | 2281302..2281517 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| EL040_RS23065 () | 2281881..2282051 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| EL040_RS11140 () | 2282271..2282486 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| EL040_RS11145 () | 2282491..2282802 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| EL040_RS11150 () | 2282799..2283332 | + | 534 | WP_001092971.1 | lysozyme | - |
| EL040_RS11155 () | 2283329..2283826 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| EL040_RS11160 () | 2284189..2284401 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| EL040_RS11165 () | 2284412..2284600 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| EL040_RS11170 () | 2284603..2284668 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| EL040_RS11175 () | 2284748..2284903 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| EL040_RS11180 () | 2285075..2285248 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| EL040_RS11185 () | 2285400..2285810 | - | 411 | WP_087634160.1 | DUF1398 domain-containing protein | - |
| EL040_RS11190 () | 2285868..2286101 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| EL040_RS11195 () | 2286490..2287035 | + | 546 | WP_000453589.1 | DNA-packaging protein | - |
| EL040_RS11200 () | 2286993..2287319 | + | 327 | Protein_2174 | phage tail protein | - |
| EL040_RS11205 () | 2287286..2287594 | + | 309 | WP_071524888.1 | phage tail protein | - |
| EL040_RS11210 () | 2287594..2288169 | + | 576 | WP_000885600.1 | tail fiber assembly protein | - |
| EL040_RS11215 () | 2288267..2288857 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| EL040_RS11220 () | 2289174..2289407 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| EL040_RS11225 () | 2289476..2289589 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| EL040_RS11230 () | 2290193..2291476 | + | 1284 | Protein_2180 | MHS family MFS transporter YdfJ | - |
| EL040_RS11235 () | 2291565..2293025 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| EL040_RS11240 () | 2293060..2293263 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EL040_RS11245 () | 2293440..2294126 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| EL040_RS11250 () | 2294215..2294961 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| EL040_RS11255 () | 2295098..2297143 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| EL040_RS11260 () | 2297187..2297705 | - | 519 | WP_126350647.1 | 2-oxo-tetronate isomerase | - |
| EL040_RS11265 () | 2297981..2298373 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| EL040_RS11270 () | 2298628..2299518 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| EL040_RS23070 () | 2299633..2299737 | - | 105 | WP_211180496.1 | protein MgtT | - |
| EL040_RS11275 () | 2299737..2299832 | - | 96 | WP_000901367.1 | protein MgtS | - |
| EL040_RS11280 () | 2299959..2301146 | - | 1188 | WP_001054183.1 | efflux MFS transporter YdeE | - |
| EL040_RS11285 () | 2301341..2302240 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| EL040_RS11290 () | 2302271..2302489 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| EL040_RS11295 () | 2302521..2302904 | - | 384 | WP_087634242.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| EL040_RS11300 () | 2302924..2303358 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|