MGE detailed information
MGE type: Prophage MGE length: 69222 bp
Accession: NZ_LR134092 Location: 2467211..2536432 Organism: Escherichia coli strain NCTC10444 Replicon: chromosome
Accession: NZ_LR134092 Location: 2467211..2536432 Organism: Escherichia coli strain NCTC10444 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL041_RS11955 () | 2462971..2463666 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| EL041_RS11960 () | 2463619..2464911 | - | 1293 | WP_071789969.1 | voltage-gated ClC-type chloride channel ClcB | - |
| EL041_RS11965 () | 2465070..2465684 | - | 615 | WP_000148698.1 | Tat proofreading chaperone DmsD | - |
| EL041_RS11970 () | 2465727..2466581 | - | 855 | WP_000526477.1 | dimethyl sulfoxide reductase anchor subunit | - |
| EL041_RS11975 () | 2466583..2467200 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| EL041_RS11980 () | 2467211..2469634 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| EL041_RS11985 () | 2469695..2472121 | - | 2427 | WP_126297856.1 | dimethyl sulfoxide reductase subunit A | - |
| EL041_RS11990 () | 2472320..2472625 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| EL041_RS11995 () | 2472733..2473443 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| EL041_RS12000 () | 2473446..2474006 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| EL041_RS12005 () | 2474041..2474382 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| EL041_RS12010 () | 2474517..2474867 | + | 351 | WP_000598291.1 | YnfA family protein | - |
| EL041_RS12015 () | 2475048..2476262 | + | 1215 | WP_024257740.1 | starvation-sensing protein RspA | - |
| EL041_RS12020 () | 2476274..2477293 | + | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| EL041_RS12030 () | 2477481..2478761 | - | 1281 | WP_047082556.1 | hypothetical protein ; Integrase | Integrase |
| EL041_RS12035 () | 2478796..2479047 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| EL041_RS12040 () | 2479120..2481591 | - | 2472 | WP_126297858.1 | exonuclease | - |
| EL041_RS12045 () | 2481685..2481876 | - | 192 | WP_001083280.1 | lysis protein YdfD | - |
| EL041_RS12050 () | 2481873..2482061 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| EL041_RS12055 () | 2482548..2483123 | - | 576 | WP_000344953.1 | hypothetical protein | - |
| EL041_RS12060 () | 2483125..2483280 | - | 156 | WP_000379589.1 | DUF1391 family protein | - |
| EL041_RS12065 () | 2483473..2483880 | - | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| EL041_RS12070 () | 2483958..2484185 | + | 228 | WP_000476993.1 | transcriptional regulator | - |
| EL041_RS12075 () | 2484169..2484690 | + | 522 | WP_000705349.1 | hypothetical protein | - |
| EL041_RS12080 () | 2484671..2485636 | + | 966 | WP_000054506.1 | hypothetical protein | - |
| EL041_RS12085 () | 2485677..2486096 | + | 420 | WP_001151195.1 | DUF977 family protein | - |
| EL041_RS12090 () | 2486130..2487470 | + | 1341 | WP_126297860.1 | ISNCY family transposase ISCARN112 | Transposase |
| EL041_RS12095 () | 2487907..2488239 | - | 333 | WP_001301033.1 | protein FlxA | - |
| EL041_RS12100 () | 2488442..2488747 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| EL041_RS12105 () | 2488772..2489011 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EL041_RS12110 () | 2489011..2489298 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EL041_RS12115 () | 2489370..2489525 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EL041_RS12120 () | 2489742..2489993 | + | 252 | WP_000981000.1 | hypothetical protein | - |
| EL041_RS12125 () | 2490060..2490338 | + | 279 | WP_032140164.1 | hypothetical protein | - |
| EL041_RS12130 () | 2490340..2491389 | + | 1050 | WP_001265195.1 | DUF968 domain-containing protein | - |
| EL041_RS12135 () | 2491403..2492155 | + | 753 | WP_001047135.1 | antitermination protein | - |
| EL041_RS12140 () | 2492433..2492522 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| EL041_RS12145 () | 2492577..2492789 | - | 213 | WP_000087757.1 | cold shock-like protein CspF | - |
| EL041_RS12150 () | 2493090..2493305 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| EL041_RS25815 () | 2493669..2493839 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| EL041_RS12155 () | 2494059..2494274 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| EL041_RS12160 () | 2494279..2494590 | + | 312 | WP_000189914.1 | YdfR family protein | - |
| EL041_RS12165 () | 2494587..2495120 | + | 534 | WP_001092971.1 | lysozyme | - |
| EL041_RS12170 () | 2495117..2495614 | + | 498 | WP_001071767.1 | DUF2514 domain-containing protein | - |
| EL041_RS12175 () | 2495978..2496190 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| EL041_RS12180 () | 2496400..2497380 | - | 981 | WP_000019440.1 | IS5 family transposase ISKpn26 | Transposase |
| EL041_RS12185 () | 2497444..2497614 | - | 171 | Protein_2338 | DUF1398 family protein | - |
| EL041_RS12190 () | 2497915..2498121 | + | 207 | WP_001031431.1 | hypothetical protein | - |
| EL041_RS12195 () | 2498682..2499221 | + | 540 | WP_000421825.1 | DUF1441 family protein | - |
| EL041_RS12200 () | 2499230..2501329 | + | 2100 | WP_000507036.1 | phage terminase large subunit family protein | - |
| EL041_RS12205 () | 2501326..2501538 | + | 213 | WP_001072973.1 | hypothetical protein | - |
| EL041_RS12210 () | 2501538..2503046 | + | 1509 | WP_000985939.1 | phage portal protein | - |
| EL041_RS12215 () | 2502991..2505018 | + | 2028 | WP_077827153.1 | hypothetical protein | VF |
| EL041_RS12220 () | 2505105..2505428 | + | 324 | WP_001097050.1 | DUF2190 family protein | - |
| EL041_RS12225 () | 2505421..2505696 | + | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| EL041_RS12230 () | 2505708..2506286 | + | 579 | WP_024243649.1 | phage tail protein | - |
| EL041_RS12235 () | 2506283..2506684 | + | 402 | WP_001079400.1 | phage minor tail U family protein | - |
| EL041_RS12240 () | 2506695..2507438 | + | 744 | WP_021560209.1 | phage tail protein | - |
| EL041_RS12245 () | 2507499..2507885 | + | 387 | WP_001300035.1 | phage minor tail protein G | - |
| EL041_RS12250 () | 2507894..2508223 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| EL041_RS12255 () | 2508195..2511260 | + | 3066 | WP_126297862.1 | phage tail tape measure protein | - |
| EL041_RS12260 () | 2511260..2511589 | + | 330 | WP_000447248.1 | phage tail protein | - |
| EL041_RS12265 () | 2511599..2512297 | + | 699 | WP_001152405.1 | phage minor tail protein L | - |
| EL041_RS12270 () | 2512303..2513046 | + | 744 | WP_032200414.1 | C40 family peptidase | - |
| EL041_RS12275 () | 2512944..2513591 | + | 648 | WP_052944032.1 | tail assembly protein | - |
| EL041_RS12280 () | 2513652..2517065 | + | 3414 | WP_126297864.1 | host specificity protein J | - |
| EL041_RS12285 () | 2517136..2517735 | + | 600 | WP_126297866.1 | hypothetical protein | VF |
| EL041_RS12290 () | 2517800..2520760 | + | 2961 | WP_126297868.1 | prophage tail fiber N-terminal domain-containing protein | - |
| EL041_RS12295 () | 2520760..2521335 | + | 576 | WP_000885614.1 | tail fiber assembly protein | - |
| EL041_RS12300 () | 2521433..2522023 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| EL041_RS12305 () | 2522340..2522573 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| EL041_RS12310 () | 2522642..2522755 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| EL041_RS12320 () | 2523357..2524640 | + | 1284 | Protein_2364 | MHS family MFS transporter YdfJ | - |
| EL041_RS12325 () | 2524729..2526189 | + | 1461 | WP_000527836.1 | mannitol dehydrogenase family protein | - |
| EL041_RS12330 () | 2526225..2526428 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EL041_RS12335 () | 2526605..2527291 | - | 687 | WP_000215556.1 | DNA-binding transcriptional regulator YdfH | - |
| EL041_RS12340 () | 2527380..2528126 | - | 747 | WP_000636575.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| EL041_RS12345 () | 2528263..2530308 | + | 2046 | WP_126297870.1 | peptidyl-dipeptidase Dcp | - |
| EL041_RS12350 () | 2530353..2530871 | - | 519 | WP_001024558.1 | 2-oxo-tetronate isomerase | - |
| EL041_RS12355 () | 2531147..2531539 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| EL041_RS12360 () | 2531794..2532684 | + | 891 | WP_126297872.1 | diguanylate cyclase DgcZ | - |
| EL041_RS25820 () | 2532799..2532903 | - | 105 | WP_211180496.1 | protein MgtT | - |
| EL041_RS12365 () | 2532903..2532998 | - | 96 | WP_000901367.1 | protein MgtS | - |
| EL041_RS12370 () | 2533072..2533769 | + | 698 | Protein_2375 | IS1 family transposase | - |
| EL041_RS12375 () | 2533902..2535089 | - | 1188 | WP_021577478.1 | efflux MFS transporter YdeE | - |
| EL041_RS12380 () | 2535284..2536183 | + | 900 | WP_000087193.1 | O-acetylserine/cysteine exporter | - |
| EL041_RS12385 () | 2536214..2536432 | - | 219 | WP_000803524.1 | multiple antibiotic resistance protein MarB | - |
| EL041_RS12390 () | 2536464..2536847 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| EL041_RS12395 () | 2536867..2537301 | - | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| EL041_RS12400 () | 2537513..2538178 | + | 666 | WP_000885019.1 | NAAT family transporter MarC | - |
| EL041_RS12405 () | 2538203..2539393 | - | 1191 | WP_000210809.1 | L-arabinose MFS transporter | - |
| EL041_RS12410 () | 2539544..2540659 | - | 1116 | Protein_2383 | putative protein YneK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|