MGE detailed information
MGE type: Prophage MGE length: 65449 bp
Accession: NZ_LR134079 Location: 2786388..2851836 Organism: Escherichia coli strain NCTC9112 Replicon: chromosome
Accession: NZ_LR134079 Location: 2786388..2851836 Organism: Escherichia coli strain NCTC9112 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL053_RS13835 () | 2782140..2782532 | - | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| EL053_RS13840 () | 2782808..2783326 | + | 519 | WP_001024558.1 | 2-oxo-tetronate isomerase | - |
| EL053_RS13845 () | 2783371..2785416 | - | 2046 | WP_024257804.1 | peptidyl-dipeptidase Dcp | - |
| EL053_RS13850 () | 2785553..2786299 | + | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| EL053_RS13855 () | 2786388..2787074 | + | 687 | WP_000215556.1 | DNA-binding transcriptional regulator YdfH | - |
| EL053_RS13860 () | 2787251..2787454 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EL053_RS13865 () | 2787490..2788950 | - | 1461 | WP_000527836.1 | mannitol dehydrogenase family protein | - |
| EL053_RS13870 () | 2789039..2790322 | - | 1284 | Protein_2676 | MHS family MFS transporter YdfJ | - |
| EL053_RS13875 () | 2790926..2791039 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| EL053_RS13880 () | 2791108..2791341 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| EL053_RS13885 () | 2791658..2792248 | + | 591 | WP_000086514.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| EL053_RS13890 () | 2792346..2792921 | - | 576 | WP_000885616.1 | tail fiber assembly protein | - |
| EL053_RS13895 () | 2792921..2795881 | - | 2961 | WP_126502599.1 | prophage tail fiber N-terminal domain-containing protein | - |
| EL053_RS13900 () | 2795946..2796545 | - | 600 | WP_040075703.1 | hypothetical protein | VF |
| EL053_RS13905 () | 2796613..2800092 | - | 3480 | WP_126502600.1 | host specificity protein J | - |
| EL053_RS13910 () | 2800153..2800785 | - | 633 | WP_000090873.1 | tail assembly protein | - |
| EL053_RS13915 () | 2800722..2801465 | - | 744 | WP_126502601.1 | C40 family peptidase | - |
| EL053_RS13920 () | 2801471..2802169 | - | 699 | WP_001152612.1 | phage minor tail protein L | - |
| EL053_RS13925 () | 2802169..2802498 | - | 330 | WP_000847345.1 | phage tail protein | - |
| EL053_RS13930 () | 2802495..2805074 | - | 2580 | WP_126502602.1 | phage tail tape measure protein | - |
| EL053_RS13935 () | 2805067..2805501 | - | 435 | WP_097345437.1 | phage tail assembly protein T | - |
| EL053_RS13940 () | 2805483..2805905 | - | 423 | WP_089691804.1 | phage minor tail protein G | - |
| EL053_RS13945 () | 2805921..2806661 | - | 741 | WP_078081102.1 | phage tail protein | - |
| EL053_RS13950 () | 2806669..2807064 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| EL053_RS13955 () | 2807061..2807639 | - | 579 | WP_000975081.1 | phage tail protein | - |
| EL053_RS13960 () | 2807651..2808004 | - | 354 | WP_000785282.1 | head-tail joining protein | - |
| EL053_RS13965 () | 2808016..2808411 | - | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| EL053_RS13970 () | 2808453..2809478 | - | 1026 | WP_000063250.1 | major capsid protein | - |
| EL053_RS13975 () | 2809534..2809866 | - | 333 | WP_001358225.1 | head decoration protein | - |
| EL053_RS13980 () | 2809876..2811195 | - | 1320 | WP_000123317.1 | S49 family peptidase | - |
| EL053_RS13985 () | 2811176..2812777 | - | 1602 | WP_001349919.1 | phage portal protein | - |
| EL053_RS13990 () | 2812774..2812980 | - | 207 | WP_000198149.1 | gpW family protein | - |
| EL053_RS13995 () | 2812977..2814903 | - | 1927 | Protein_2701 | phage terminase large subunit family protein | - |
| EL053_RS14000 () | 2814878..2815423 | - | 546 | WP_000453617.1 | DNA-packaging protein | - |
| EL053_RS14005 () | 2815812..2816045 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| EL053_RS14010 () | 2816103..2816513 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| EL053_RS14015 () | 2816664..2816837 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| EL053_RS14020 () | 2817009..2817164 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| EL053_RS14025 () | 2817244..2817309 | - | 66 | WP_122134696.1 | hypothetical protein | - |
| EL053_RS14030 () | 2817312..2817500 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| EL053_RS14035 () | 2817511..2817723 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| EL053_RS14040 () | 2818087..2818584 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| EL053_RS14045 () | 2818581..2819114 | - | 534 | WP_001092971.1 | lysozyme | - |
| EL053_RS14050 () | 2819111..2819422 | - | 312 | WP_000189915.1 | YdfR family protein | - |
| EL053_RS14055 () | 2819427..2819642 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| EL053_RS27540 () | 2819862..2820032 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| EL053_RS14060 () | 2820396..2820611 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| EL053_RS14065 () | 2820912..2821124 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| EL053_RS14070 () | 2821179..2821268 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| EL053_RS14075 () | 2821546..2822298 | - | 753 | WP_001047135.1 | antitermination protein | - |
| EL053_RS14080 () | 2822312..2823361 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| EL053_RS14085 () | 2823363..2823641 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| EL053_RS14090 () | 2823708..2823959 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| EL053_RS14095 () | 2824176..2824331 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EL053_RS14100 () | 2824403..2824690 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EL053_RS14105 () | 2824690..2824929 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EL053_RS14110 () | 2824954..2825259 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| EL053_RS14115 () | 2825463..2825774 | + | 312 | Protein_2726 | FlxA-like family protein | - |
| EL053_RS14120 () | 2825810..2827018 | - | 1209 | WP_000343717.1 | IS256 family transposase IS1414 | Transposase |
| EL053_RS14125 () | 2827555..2828868 | - | 1314 | WP_114493669.1 | ISNCY family transposase ISCARN112 | Transposase |
| EL053_RS27405 () | 2829637..2829924 | - | 288 | Protein_2729 | hypothetical protein | - |
| EL053_RS14140 () | 2830136..2830833 | + | 698 | Protein_2730 | IS1 family transposase | - |
| EL053_RS14145 () | 2830850..2831119 | - | 270 | Protein_2731 | potassium transporter TrkG | - |
| EL053_RS14150 () | 2831316..2831501 | - | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| EL053_RS14155 () | 2831718..2832215 | - | 498 | WP_001135310.1 | lysozyme RrrD | - |
| EL053_RS14160 () | 2832215..2832430 | - | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| EL053_RS14165 () | 2832682..2833056 | - | 375 | WP_001348108.1 | hypothetical protein | - |
| EL053_RS14170 () | 2833228..2833655 | - | 428 | Protein_2736 | cell envelope integrity protein TolA | - |
| EL053_RS14175 () | 2834700..2835242 | - | 543 | WP_001614531.1 | DUF1133 family protein | - |
| EL053_RS14180 () | 2835239..2835529 | - | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| EL053_RS14185 () | 2835529..2836128 | - | 600 | WP_000940319.1 | DUF1367 family protein | - |
| EL053_RS14195 () | 2836942..2837280 | + | 339 | WP_000149055.1 | DUF1971 domain-containing protein | - |
| EL053_RS14205 () | 2837901..2838902 | - | 1002 | WP_000354966.1 | hypothetical protein | - |
| EL053_RS14210 () | 2838918..2839880 | - | 963 | WP_014639476.1 | hypothetical protein | - |
| EL053_RS14215 () | 2840079..2840495 | - | 417 | WP_001151122.1 | DUF977 family protein | - |
| EL053_RS14220 () | 2840511..2841272 | - | 762 | WP_000450674.1 | DUF1627 domain-containing protein | - |
| EL053_RS14225 () | 2841295..2842041 | - | 747 | WP_000788968.1 | ATP-binding protein | - |
| EL053_RS14230 () | 2842048..2842905 | - | 858 | WP_096215919.1 | DUF1376 domain-containing protein | - |
| EL053_RS14235 () | 2842918..2843340 | - | 423 | WP_000693802.1 | hypothetical protein | - |
| EL053_RS14240 () | 2843337..2843591 | - | 255 | WP_001072343.1 | hypothetical protein | - |
| EL053_RS14245 () | 2843671..2844090 | + | 420 | WP_000233320.1 | helix-turn-helix domain-containing protein | - |
| EL053_RS14260 () | 2844526..2844681 | + | 156 | WP_001169151.1 | YdaF family protein | - |
| EL053_RS14265 () | 2844678..2845166 | - | 489 | WP_010377803.1 | superinfection exclusion B family protein | - |
| EL053_RS14270 () | 2845608..2845829 | + | 222 | WP_000560223.1 | killing protein KilR | - |
| EL053_RS14275 () | 2845829..2845999 | + | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| EL053_RS14280 () | 2846074..2846349 | + | 276 | WP_000632297.1 | protein RacC | - |
| EL053_RS14285 () | 2846451..2849051 | + | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| EL053_RS14290 () | 2849044..2849853 | + | 810 | WP_000166313.1 | recombination protein RecT | - |
| EL053_RS14295 () | 2849909..2850058 | + | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| EL053_RS14300 () | 2850096..2850284 | + | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 2850102..2850280 | - | 179 | NuclAT_0 | - | - |
| - () | 2850102..2850280 | - | 179 | NuclAT_0 | - | - |
| - () | 2850102..2850280 | - | 179 | NuclAT_0 | - | - |
| - () | 2850102..2850280 | - | 179 | NuclAT_0 | - | - |
| EL053_RS14305 () | 2850384..2850599 | + | 216 | WP_000079604.1 | excisionase XisR | - |
| EL053_RS14310 () | 2850601..2851836 | + | 1236 | WP_000040839.1 | Protein GrpE ; Integrase | Integrase |
| EL053_RS14315 () | 2851888..2852823 | + | 936 | WP_000662472.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| EL053_RS14320 () | 2852941..2854149 | + | 1209 | WP_000343717.1 | IS256 family transposase | - |
| EL053_RS14325 () | 2854276..2855649 | - | 1374 | WP_000123746.1 | ATP-dependent RNA helicase DbpA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|