MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93844 bp
Accession: NZ_LN999012 Location: 1..93844 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. DT2 Replicon: plasmid pSLT
Accession: NZ_LN999012 Location: 1..93844 Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. DT2 Replicon: plasmid pSLT
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STMDT2_RS23255 () | 94..378 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| STMDT2_RS23260 () | 391..546 | + | 156 | WP_000983042.1 | hypothetical protein | - |
| STMDT2_RS23265 () | 712..1155 | + | 444 | WP_010999935.1 | phospholipase | - |
| STMDT2_RS23270 () | 1334..1600 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| STMDT2_RS23280 () | 1850..1927 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| STMDT2_RS23285 () | 1908..2789 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| STMDT2_RS25220 () | 3649..3870 | + | 222 | WP_071533052.1 | SdiA-regulated domain-containing protein | - |
| STMDT2_RS23290 () | 3967..4725 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| STMDT2_RS23295 () | 4992..5549 | - | 558 | WP_000725062.1 | complement resistance protein Rck | - |
| STMDT2_RS23300 () | 5639..6538 | - | 900 | WP_077951043.1 | YjiK family protein | - |
| STMDT2_RS26085 () | 6535..6681 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| STMDT2_RS23305 () | 6671..7324 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| STMDT2_RS23310 () | 7569..7919 | - | 351 | WP_001526811.1 | helix-turn-helix transcriptional regulator | - |
| STMDT2_RS23315 () | 7904..8116 | - | 213 | WP_000004313.1 | transcriptional regulator PefI | - |
| STMDT2_RS23320 () | 8548..9423 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| STMDT2_RS23325 () | 9676..10233 | - | 558 | WP_010999940.1 | membrane protein | - |
| STMDT2_RS23330 () | 10248..10940 | - | 693 | WP_001038510.1 | fimbrial chaperone PefD | - |
| STMDT2_RS23335 () | 10933..13341 | - | 2409 | WP_000007893.1 | outer membrane usher protein PefC | - |
| STMDT2_RS23340 () | 13569..14087 | - | 519 | WP_000748205.1 | major pilin PefA | - |
| STMDT2_RS23345 () | 14362..14664 | - | 303 | WP_000979451.1 | transcriptional regulator PefB | - |
| STMDT2_RS23355 () | 15383..15764 | + | 382 | Protein_20 | YgiW/YdeI family stress tolerance OB fold protein | - |
| STMDT2_RS26005 () | 15933..16377 | + | 445 | Protein_21 | site-specific integrase | - |
| STMDT2_RS23365 () | 16636..17625 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| STMDT2_RS25710 () | 18119..18415 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| STMDT2_RS23375 () | 18899..19420 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| STMDT2_RS23380 () | 20096..20314 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| STMDT2_RS23385 () | 20316..20621 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| STMDT2_RS23390 () | 20623..20913 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| STMDT2_RS23395 () | 20910..21431 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| STMDT2_RS23400 () | 21466..22248 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| STMDT2_RS23405 () | 22257..22970 | + | 714 | Protein_30 | EAL domain-containing protein | - |
| STMDT2_RS23410 () | 22974..23483 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| STMDT2_RS23415 () | 23477..23962 | + | 486 | WP_063977669.1 | hypothetical protein | - |
| STMDT2_RS26010 () | 24239..24526 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| STMDT2_RS23425 () | 24682..25242 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| STMDT2_RS23430 () | 25309..25659 | - | 351 | WP_001541541.1 | helix-turn-helix domain-containing protein | - |
| STMDT2_RS25240 () | 25716..26140 | + | 425 | Protein_36 | IS200/IS605 family transposase | - |
| STMDT2_RS23440 () | 26267..26917 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| STMDT2_RS23445 () | 27178..27903 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| STMDT2_RS23450 () | 28184..29959 | - | 1776 | WP_063977671.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| STMDT2_RS26090 () | 30011..30178 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| STMDT2_RS23455 () | 30141..30908 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| STMDT2_RS23460 () | 31082..31246 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| STMDT2_RS23465 () | 31420..32313 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| STMDT2_RS23470 () | 32921..33958 | + | 1038 | WP_001121399.1 | IS630 family transposase | - |
| STMDT2_RS23475 () | 34147..35172 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| STMDT2_RS23480 () | 35105..36769 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| STMDT2_RS23485 () | 36753..37313 | - | 561 | WP_001240331.1 | recombinase family protein | - |
| STMDT2_RS23490 () | 37520..38260 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| STMDT2_RS23495 () | 38915..39403 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| STMDT2_RS23500 () | 39662..40777 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| STMDT2_RS23505 () | 40863..41279 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| STMDT2_RS23510 () | 41463..41798 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| STMDT2_RS23515 () | 41855..42421 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| STMDT2_RS23520 () | 42453..43394 | - | 942 | WP_000728917.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| STMDT2_RS23525 () | 43809..45014 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| STMDT2_RS23530 () | 45014..45988 | + | 975 | WP_000064274.1 | ParB/RepB/Spo0J family partition protein | - |
| STMDT2_RS23535 () | 46070..47344 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| STMDT2_RS23540 () | 47344..47766 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| STMDT2_RS25720 () | 48277..48747 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| STMDT2_RS23550 () | 48740..49096 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| STMDT2_RS23560 () | 49478..50158 | + | 681 | WP_000088645.1 | DNA methylase | - |
| STMDT2_RS23565 () | 50158..50379 | + | 222 | WP_063977672.1 | hypothetical protein | - |
| STMDT2_RS23570 () | 50435..50848 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| STMDT2_RS23575 () | 50920..51684 | + | 765 | WP_001246548.1 | membrane protein | - |
| STMDT2_RS23580 () | 52180..52614 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| STMDT2_RS23585 () | 52681..53115 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| STMDT2_RS23590 () | 53351..53674 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| STMDT2_RS26095 () | 53638..53793 | + | 156 | WP_001526868.1 | hypothetical protein | - |
| STMDT2_RS23600 () | 54387..54905 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| STMDT2_RS23605 () | 54960..55202 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| STMDT2_RS23610 () | 55271..57268 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| STMDT2_RS23615 () | 57308..57742 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| STMDT2_RS23620 () | 57739..58476 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| STMDT2_RS26100 () | 58725..58883 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| STMDT2_RS26105 () | 58986..59804 | + | 819 | Protein_75 | DUF945 domain-containing protein | - |
| STMDT2_RS23635 () | 60115..60585 | - | 471 | WP_001526856.1 | transglycosylase SLT domain-containing protein | - |
| STMDT2_RS23640 () | 61000..61380 | + | 381 | WP_001151546.1 | relaxosome protein TraM | - |
| STMDT2_RS23645 () | 61573..62259 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| STMDT2_RS25275 () | 62353..62580 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| STMDT2_RS23650 () | 62622..62984 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| STMDT2_RS23655 () | 62999..63310 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| STMDT2_RS23660 () | 63332..63898 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| STMDT2_RS23665 () | 63885..64625 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| STMDT2_RS23670 () | 64625..66046 | + | 1422 | WP_000146700.1 | conjugal transfer protein TraB | - |
| STMDT2_RS23675 () | 66036..66632 | + | 597 | WP_000527896.1 | conjugal transfer protein TraP | - |
| STMDT2_RS23680 () | 66610..66855 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| STMDT2_RS23685 () | 66852..67367 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| STMDT2_RS23690 () | 67502..67723 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| STMDT2_RS23695 () | 67716..68183 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| STMDT2_RS23700 () | 68300..68563 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| STMDT2_RS23705 () | 68579..71227 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| STMDT2_RS23710 () | 71202..71588 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| STMDT2_RS23715 () | 71585..72217 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| STMDT2_RS23720 () | 72214..73206 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| STMDT2_RS23725 () | 73225..73533 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| STMDT2_RS23730 () | 73518..74156 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| STMDT2_RS23735 () | 74193..74612 | + | 420 | WP_001229397.1 | HNH endonuclease | - |
| STMDT2_RS23740 () | 74609..76435 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| STMDT2_RS23745 () | 76446..76661 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| STMDT2_RS23750 () | 76673..77422 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| STMDT2_RS23755 () | 77636..77929 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| STMDT2_RS23760 () | 77916..78464 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| STMDT2_RS23765 () | 78454..79836 | + | 1383 | WP_001161719.1 | conjugal transfer protein TraH | - |
| STMDT2_RS23770 () | 79833..82655 | + | 2823 | WP_001007086.1 | conjugal transfer mating pair stabilization protein TraG | - |
| STMDT2_RS23775 () | 82671..83165 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| STMDT2_RS23780 () | 83201..83932 | + | 732 | WP_000782438.1 | complement resistance protein TraT | - |
| STMDT2_RS23785 () | 84309..86471 | + | 2163 | WP_063977673.1 | type IV conjugative transfer system coupling protein TraD | - |
| STMDT2_RS23790 () | 86480..86878 | - | 399 | WP_000911322.1 | tRNA(fMet)-specific endonuclease VapC | - |
| STMDT2_RS23795 () | 86878..87105 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | - |
| STMDT2_RS23800 () | 87187..92445 | + | 5259 | WP_000986921.1 | conjugative transfer relaxase/helicase TraI | - |
| STMDT2_RS23805 () | 92465..93205 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| STMDT2_RS23810 () | 93260..93823 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|