MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 100650 bp
Accession: NZ_HF571988 Location: 4420942..4521591 Organism: Yersinia enterocolitica (type O:5) str. YE53/03 isolate host faecal sample Replicon: chromosome
Accession: NZ_HF571988 Location: 4420942..4521591 Organism: Yersinia enterocolitica (type O:5) str. YE53/03 isolate host faecal sample Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YE5303_RS24295 () | 4416530..4416790 | - | 261 | WP_180745740.1 | hypothetical protein | - |
| YE5303_RS20505 () | 4416770..4417137 | - | 368 | Protein_4002 | type VI secretion system contractile sheath small subunit | - |
| YE5303_RS20510 () | 4417715..4418272 | - | 558 | WP_003100847.1 | recombinase family protein | - |
| YE5303_RS20515 () | 4418266..4418637 | - | 372 | WP_003100853.1 | hypothetical protein | - |
| YE5303_RS20520 () | 4418634..4419134 | - | 501 | WP_003100856.1 | hypothetical protein | - |
| YE5303_RS20525 () | 4419131..4419457 | - | 327 | WP_003100858.1 | hypothetical protein | - |
| YE5303_RS20530 () | 4419607..4420530 | - | 924 | WP_001118639.1 | IS5 family transposase | - |
| YE5303_RS23730 () | 4420679..4420891 | - | 213 | WP_075261940.1 | KTSC domain-containing protein | - |
| YE5303_RS20535 () | 4420907..4422667 | - | 1761 | WP_046051737.1 | DUF853 family protein | - |
| YE5303_RS20540 () | 4422657..4423850 | - | 1194 | WP_046051738.1 | SIR2 family protein | - |
| YE5303_RS20545 () | 4423935..4424501 | - | 567 | WP_046051739.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YE5303_RS20550 () | 4424661..4427675 | + | 3015 | WP_046051740.1 | Tn3 family transposase ISEc63 | Transposase |
| YE5303_RS20555 () | 4427964..4428320 | - | 357 | WP_003465043.1 | cupin domain-containing protein | - |
| YE5303_RS20560 () | 4428628..4431594 | + | 2967 | WP_003100881.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| YE5303_RS20565 () | 4431762..4432372 | - | 611 | Protein_4015 | DUF2913 family protein | - |
| YE5303_RS20570 () | 4432479..4433027 | - | 549 | WP_046051742.1 | inovirus-type Gp2 protein | - |
| YE5303_RS20575 () | 4433236..4434828 | + | 1593 | WP_046051743.1 | DUF3987 domain-containing protein | - |
| YE5303_RS20580 () | 4435440..4435652 | - | 213 | WP_080342191.1 | AlpA family phage regulatory protein | - |
| YE5303_RS20585 () | 4435774..4436403 | - | 630 | WP_046051744.1 | inovirus Gp2 family protein | - |
| YE5303_RS20590 () | 4436976..4437860 | + | 885 | WP_046051745.1 | 50S ribosome-binding GTPase | - |
| YE5303_RS20595 () | 4438310..4439038 | + | 729 | WP_046051746.1 | WYL domain-containing protein | - |
| YE5303_RS24230 () | 4439260..4439538 | + | 279 | WP_173426638.1 | hypothetical protein | - |
| YE5303_RS20605 () | 4439573..4439860 | + | 288 | WP_052705596.1 | hypothetical protein | - |
| YE5303_RS20610 () | 4439873..4440184 | + | 312 | WP_046051747.1 | hypothetical protein | - |
| YE5303_RS20615 () | 4440224..4440622 | + | 399 | WP_046051748.1 | hypothetical protein | - |
| YE5303_RS20620 () | 4440683..4441216 | + | 534 | WP_046051749.1 | DUF4234 domain-containing protein | - |
| YE5303_RS20625 () | 4441306..4442124 | + | 819 | WP_046051750.1 | DUF945 domain-containing protein | - |
| YE5303_RS20630 () | 4442395..4442874 | + | 480 | WP_046051751.1 | antirestriction protein | - |
| YE5303_RS20635 () | 4442886..4443365 | + | 480 | WP_046051752.1 | DNA repair protein RadC | - |
| YE5303_RS20640 () | 4443386..4443607 | + | 222 | WP_046051753.1 | DUF987 domain-containing protein | - |
| YE5303_RS20645 () | 4443664..4443993 | + | 330 | WP_167493973.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| YE5303_RS20650 () | 4444045..4444422 | + | 378 | WP_046051755.1 | TA system toxin CbtA family protein | Toxin Detail |
| YE5303_RS20655 () | 4444419..4444910 | + | 492 | WP_046051756.1 | hypothetical protein | - |
| YE5303_RS20660 () | 4444940..4445143 | + | 204 | WP_046051757.1 | DUF957 domain-containing protein | - |
| YE5303_RS20665 () | 4445223..4446071 | + | 849 | WP_046051758.1 | DUF4942 domain-containing protein | - |
| YE5303_RS20670 () | 4446443..4447426 | - | 984 | WP_046051759.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| YE5303_RS20675 () | 4447445..4448896 | - | 1452 | WP_046051760.1 | TraI domain-containing protein | - |
| YE5303_RS20680 () | 4449262..4449699 | - | 438 | WP_046051761.1 | hypothetical protein | - |
| YE5303_RS20685 () | 4450046..4451494 | - | 1449 | WP_046051762.1 | Cu(+)/Ag(+) sensor histidine kinase | - |
| YE5303_RS20690 () | 4451484..4452167 | - | 684 | WP_046051763.1 | Transcriptional regulatory protein CusR | VF |
| YE5303_RS20695 () | 4452362..4453747 | + | 1386 | WP_046051764.1 | Cation efflux system protein CusC | VF |
| YE5303_RS20700 () | 4453780..4454136 | + | 357 | WP_046052096.1 | cation efflux system protein CusF | - |
| YE5303_RS20705 () | 4454258..4455541 | + | 1284 | WP_046051765.1 | efflux RND transporter periplasmic adaptor subunit | - |
| YE5303_RS20710 () | 4455552..4458689 | + | 3138 | WP_046051766.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| YE5303_RS20715 () | 4458792..4459232 | + | 441 | WP_046051767.1 | hypothetical protein | - |
| YE5303_RS20720 () | 4459513..4461846 | + | 2334 | WP_154392821.1 | cadmium-translocating P-type ATPase | - |
| YE5303_RS20725 () | 4461889..4462080 | + | 192 | WP_046051768.1 | DUF2933 domain-containing protein | - |
| YE5303_RS20730 () | 4462113..4462850 | - | 738 | WP_046051769.1 | Murein DD-endopeptidase MepM | VF |
| YE5303_RS20735 () | 4463002..4463199 | - | 198 | WP_046051770.1 | hypothetical protein | - |
| YE5303_RS20740 () | 4463320..4463760 | - | 441 | WP_046051771.1 | hypothetical protein | - |
| YE5303_RS20745 () | 4463992..4465788 | + | 1797 | WP_046051772.1 | copper resistance system multicopper oxidase | - |
| YE5303_RS20750 () | 4465794..4466684 | + | 891 | WP_154392819.1 | copper resistance protein B | - |
| YE5303_RS20755 () | 4466713..4467093 | + | 381 | WP_046051774.1 | copper homeostasis periplasmic binding protein CopC | - |
| YE5303_RS20760 () | 4467099..4468031 | + | 933 | WP_046051775.1 | copper homeostasis membrane protein CopD | - |
| YE5303_RS20765 () | 4468059..4468739 | + | 681 | WP_046051776.1 | Transcriptional activator protein CopR | VF |
| YE5303_RS20770 () | 4468736..4470154 | + | 1419 | WP_046051777.1 | heavy metal sensor histidine kinase | - |
| YE5303_RS20775 () | 4470394..4470828 | + | 435 | WP_046051778.1 | hypothetical protein | - |
| YE5303_RS20780 () | 4470966..4472282 | - | 1317 | WP_197541082.1 | type II restriction endonuclease | - |
| YE5303_RS20785 () | 4472686..4473450 | - | 765 | WP_050928760.1 | multicopper oxidase domain-containing protein | - |
| YE5303_RS20800 () | 4475315..4476628 | + | 1314 | WP_046051779.1 | Anaerobilin synthase | VF |
| YE5303_RS20805 () | 4476625..4477170 | + | 546 | WP_046051780.1 | Intracellular heme transport protein HutX | VF |
| YE5303_RS20810 () | 4477167..4477817 | + | 651 | WP_019084274.1 | putative sugar epimerase YhfK | VF |
| YE5303_RS20815 () | 4477849..4478094 | + | 246 | WP_019080740.1 | hemin uptake protein HemP | - |
| YE5303_RS20820 () | 4478269..4480332 | + | 2064 | WP_046051781.1 | Hemin receptor | VF |
| YE5303_RS20825 () | 4480449..4481486 | + | 1038 | WP_046051782.1 | Hemin transport protein HemS | VF |
| YE5303_RS20830 () | 4481483..4482322 | + | 840 | WP_005156544.1 | Hemin-binding periplasmic protein HmuT | VF |
| YE5303_RS20835 () | 4482319..4483323 | + | 1005 | WP_005175607.1 | Hemin transport system permease protein HmuU | VF |
| YE5303_RS20840 () | 4483325..4484101 | + | 777 | WP_032900964.1 | Hemin import ATP-binding protein HmuV | VF |
| YE5303_RS20845 () | 4484104..4485573 | - | 1470 | WP_046051783.1 | PLP-dependent aminotransferase family protein | - |
| YE5303_RS20850 () | 4485740..4485979 | + | 240 | WP_026017991.1 | DUF1127 domain-containing protein | - |
| YE5303_RS20855 () | 4486043..4488175 | - | 2133 | WP_019084277.1 | TonB-dependent siderophore receptor | - |
| YE5303_RS20860 () | 4488594..4490927 | + | 2334 | WP_046052100.1 | mechanosensitive ion channel family protein | - |
| YE5303_RS20865 () | 4490984..4493767 | - | 2784 | WP_046051784.1 | insulinase family protein | - |
| YE5303_RS20870 () | 4493752..4495497 | - | 1746 | WP_162197868.1 | ABC transporter ATP-binding protein/permease | - |
| YE5303_RS20875 () | 4495587..4498358 | - | 2772 | WP_046051785.1 | TonB-dependent receptor | - |
| YE5303_RS20880 () | 4498464..4499432 | - | 969 | WP_019084282.1 | FecR domain-containing protein | - |
| YE5303_RS20885 () | 4499422..4499964 | - | 543 | WP_019080752.1 | putative RNA polymerase sigma factor FecI | VF |
| YE5303_RS24235 () | 4499963..4500106 | + | 144 | WP_019084284.1 | hypothetical protein | - |
| YE5303_RS20890 () | 4500420..4501139 | + | 720 | WP_046052102.1 | energy transducer TonB | - |
| YE5303_RS20895 () | 4501428..4501703 | - | 276 | WP_046051786.1 | sulfurtransferase-like selenium metabolism protein YedF | - |
| YE5303_RS20900 () | 4501700..4502914 | - | 1215 | WP_046051787.1 | selenium metabolism membrane protein YedE/FdhT | - |
| YE5303_RS20905 () | 4503101..4504177 | - | 1077 | WP_046051788.1 | Yop proteins translocation protein U | VF |
| YE5303_RS20910 () | 4504167..4504961 | - | 795 | WP_046051789.1 | hypothetical protein | VF |
| YE5303_RS20915 () | 4504963..4505232 | - | 270 | WP_005156602.1 | Surface presentation of antigens protein SpaQ | VF |
| YE5303_RS20920 () | 4505255..4505905 | - | 651 | WP_046051790.1 | Surface presentation of antigens protein SpaP | VF |
| YE5303_RS20925 () | 4506011..4506961 | - | 951 | WP_046051791.1 | YscQ/HrcQ family type III secretion apparatus protein | - |
| YE5303_RS20930 () | 4506939..4507337 | - | 399 | WP_019080761.1 | hypothetical protein | - |
| YE5303_RS20935 () | 4507318..4507692 | - | 375 | WP_046052103.1 | type III secretion protein | - |
| YE5303_RS20940 () | 4507701..4509056 | - | 1356 | WP_019084292.1 | putative secretion system apparatus ATP synthase SsaN | VF |
| YE5303_RS20945 () | 4509043..4511082 | - | 2040 | WP_046051792.1 | Secretion system apparatus protein SsaV | VF |
| YE5303_RS20950 () | 4511079..4511450 | - | 372 | WP_046051793.1 | hypothetical protein | VF |
| YE5303_RS20955 () | 4511559..4512572 | - | 1014 | WP_046051794.1 | hypothetical protein | VF |
| YE5303_RS20960 () | 4512556..4513215 | - | 660 | WP_046051795.1 | hypothetical protein | VF |
| YE5303_RS20965 () | 4513212..4513805 | - | 594 | WP_046051796.1 | hypothetical protein | - |
| YE5303_RS20970 () | 4513822..4514553 | - | 732 | WP_019080769.1 | hypothetical protein | VF |
| YE5303_RS20975 () | 4514550..4514798 | - | 249 | WP_046051797.1 | type III secretion system inner rod subunit SctI | - |
| YE5303_RS20980 () | 4514839..4515114 | - | 276 | WP_019080771.1 | hypothetical protein | VF |
| YE5303_RS20985 () | 4515111..4515326 | - | 216 | WP_019080772.1 | hypothetical protein | VF |
| YE5303_RS20990 () | 4515335..4516042 | - | 708 | WP_046051798.1 | HTH-type transcriptional activator RhaR | VF |
| YE5303_RS20995 () | 4516117..4516968 | - | 852 | WP_046051799.1 | hypothetical protein | VF |
| YE5303_RS21000 () | 4517014..4517496 | - | 483 | WP_046051800.1 | hypothetical protein | VF |
| YE5303_RS21005 () | 4517493..4517906 | - | 414 | WP_046051801.1 | hypothetical protein | VF |
| YE5303_RS21010 () | 4517903..4518496 | - | 594 | WP_046051802.1 | chemotaxis protein | - |
| YE5303_RS21015 () | 4518507..4519973 | - | 1467 | WP_046051803.1 | Secreted effector protein SseC | VF |
| YE5303_RS21020 () | 4519966..4520433 | - | 468 | WP_046051804.1 | hypothetical protein | VF |
| YE5303_RS21025 () | 4520462..4521049 | - | 588 | WP_019080780.1 | Secreted effector protein SseB | VF |
| YE5303_RS21030 () | 4521099..4521392 | - | 294 | WP_046051805.1 | chromosome partitioning protein ParA | - |
| YE5303_RS21035 () | 4521500..4521715 | - | 216 | WP_019080782.1 | EscE/YscE/SsaE family type III secretion system needle protein co-chaperone | - |
| YE5303_RS21040 () | 4521733..4522944 | - | 1212 | WP_046051806.1 | type III secretion system inner membrane ring subunit SctD | - |
| YE5303_RS21045 () | 4522946..4524427 | - | 1482 | WP_046051807.1 | EscC/YscC/HrcC family type III secretion system outer membrane ring protein | - |
| YE5303_RS21050 () | 4524424..4524858 | - | 435 | WP_046051808.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|