MGE detailed information
MGE type: Prophage MGE length: 31662 bp
Accession: NZ_FO704550 Location: 930472..962133 Organism: Xenorhabdus doucetiae strain FRM16 Replicon: chromosome
Accession: NZ_FO704550 Location: 930472..962133 Organism: Xenorhabdus doucetiae strain FRM16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XDD1_RS04380 () | 925602..926984 | + | 1383 | WP_045969050.1 | cysteine--tRNA ligase | - |
| XDD1_RS18755 () | 927073..927309 | - | 237 | WP_071827242.1 | stationary-phase-induced ribosome-associated protein | - |
| XDD1_RS04385 () | 927570..927782 | - | 213 | WP_045969052.1 | ribosome-associated protein YbcJ | - |
| XDD1_RS04390 () | 927782..928657 | - | 876 | WP_045969054.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| XDD1_RS04400 () | 928994..929176 | - | 183 | WP_045973326.1 | AlpA family phage regulatory protein | - |
| XDD1_RS04405 () | 929752..930168 | - | 417 | WP_045969056.1 | hypothetical protein | - |
| XDD1_RS04410 () | 930472..931083 | - | 612 | WP_045969058.1 | helix-turn-helix transcriptional regulator | - |
| XDD1_RS04415 () | 931436..931672 | + | 237 | WP_045969060.1 | helix-turn-helix domain-containing protein | - |
| XDD1_RS04420 () | 931852..934488 | + | 2637 | WP_045969062.1 | host specificity protein J | - |
| XDD1_RS04425 () | 934520..934945 | - | 426 | WP_045969064.1 | type II toxin-antitoxin system VapC family toxin | - |
| XDD1_RS04430 () | 934945..935199 | - | 255 | WP_038262601.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| XDD1_RS04435 () | 935439..935768 | + | 330 | WP_038262604.1 | type I toxin-antitoxin system SymE family toxin | - |
| XDD1_RS04440 () | 935909..936247 | + | 339 | WP_045969066.1 | SymE family type I addiction module toxin | - |
| XDD1_RS04445 () | 936350..936646 | + | 297 | WP_045973327.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XDD1_RS04450 () | 936648..936932 | + | 285 | WP_045969068.1 | putative addiction module antidote protein | Antitoxin Detail |
| XDD1_RS04455 () | 936995..937378 | - | 384 | WP_045969070.1 | hypothetical protein | - |
| XDD1_RS04460 () | 937705..938184 | - | 480 | WP_045969072.1 | hypothetical protein | - |
| XDD1_RS19715 () | 938538..939859 | - | 1322 | Protein_855 | hypothetical protein | VF |
| XDD1_RS04475 () | 940142..940564 | - | 423 | WP_045969076.1 | hypothetical protein | - |
| XDD1_RS04480 () | 940561..940980 | - | 420 | WP_045969078.1 | hypothetical protein | - |
| XDD1_RS19720 () | 941208..941432 | - | 225 | WP_197541013.1 | hypothetical protein | - |
| XDD1_RS04490 () | 941969..942205 | - | 237 | WP_045969080.1 | hypothetical protein | - |
| XDD1_RS04495 () | 942268..942495 | - | 228 | WP_045969082.1 | hypothetical protein | - |
| XDD1_RS04500 () | 942500..947122 | - | 4623 | WP_045969084.1 | RHS repeat protein | - |
| XDD1_RS04505 () | 947134..947490 | - | 357 | WP_045969086.1 | DUF4150 domain-containing protein | - |
| XDD1_RS04510 () | 947483..948700 | - | 1218 | WP_045969088.1 | DUF2169 domain-containing protein | - |
| XDD1_RS04515 () | 948716..950905 | - | 2190 | WP_045969090.1 | Actin cross-linking toxin VgrG1 | VF |
| XDD1_RS04520 () | 951378..952361 | - | 984 | WP_045968417.1 | IS30 family transposase ISPlu1 | Transposase |
| XDD1_RS04525 () | 952921..953250 | + | 330 | WP_045969092.1 | hypothetical protein | - |
| XDD1_RS04530 () | 953472..954467 | - | 996 | WP_084720938.1 | MBL fold metallo-hydrolase | - |
| XDD1_RS04535 () | 954509..955162 | - | 654 | WP_045969094.1 | DUF2807 domain-containing protein | - |
| XDD1_RS04540 () | 955284..955838 | - | 555 | WP_052705639.1 | MepB family protein | - |
| XDD1_RS04545 () | 955979..957313 | - | 1335 | WP_045973331.1 | murein transglycosylase D | - |
| XDD1_RS04550 () | 957386..958141 | - | 756 | WP_045969098.1 | hydroxyacylglutathione hydrolase | - |
| XDD1_RS04555 () | 958193..958912 | + | 720 | WP_045969100.1 | methyltransferase domain-containing protein | - |
| XDD1_RS04560 () | 958921..959391 | - | 471 | WP_045969102.1 | ribonuclease HI | - |
| XDD1_RS04565 () | 959455..960204 | + | 750 | WP_045969104.1 | DNA polymerase III subunit epsilon | - |
| XDD1_RS04575 () | 960472..961017 | - | 546 | WP_084720940.1 | GNAT family N-acetyltransferase | - |
| XDD1_RS04580 () | 961279..962133 | - | 855 | WP_052705640.1 | hypothetical protein | - |
| XDD1_RS04585 () | 963005..964999 | + | 1995 | WP_045969106.1 | transketolase | - |
| XDD1_RS04590 () | 965288..966307 | + | 1020 | WP_045969108.1 | erythrose-4-phosphate dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|