MGE detailed information
MGE type: Prophage MGE length: 63042 bp
Accession: NZ_FO704550 Location: 3593314..3656355 Organism: Xenorhabdus doucetiae strain FRM16 Replicon: chromosome
Accession: NZ_FO704550 Location: 3593314..3656355 Organism: Xenorhabdus doucetiae strain FRM16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XDD1_RS15625 () | 3588591..3590960 | + | 2370 | WP_045972612.1 | LPS assembly protein LptD | - |
| XDD1_RS15630 () | 3591025..3592326 | + | 1302 | WP_045972614.1 | peptidylprolyl isomerase SurA | - |
| XDD1_RS15635 () | 3592332..3593321 | + | 990 | WP_045973721.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
| XDD1_RS15640 () | 3593314..3594129 | + | 816 | WP_045972616.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| XDD1_RS15645 () | 3594166..3594543 | + | 378 | WP_045972618.1 | Co2+/Mg2+ efflux protein ApaG | - |
| XDD1_RS15650 () | 3594549..3595367 | + | 819 | WP_045972620.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH | - |
| XDD1_RS15655 () | 3595433..3595915 | - | 483 | WP_197541041.1 | type 3 dihydrofolate reductase | - |
| XDD1_RS15660 () | 3596186..3597607 | - | 1422 | WP_045972624.1 | cell division protein FtsP | - |
| XDD1_RS15665 () | 3597806..3598540 | - | 735 | WP_045972626.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| XDD1_RS15670 () | 3598606..3600873 | - | 2268 | WP_045972628.1 | DNA topoisomerase IV subunit A | - |
| XDD1_RS15675 () | 3600939..3602834 | - | 1896 | WP_045972630.1 | DNA topoisomerase IV subunit B | - |
| XDD1_RS15680 () | 3602908..3603516 | - | 609 | WP_045972632.1 | esterase YqiA | - |
| XDD1_RS15685 () | 3603516..3604358 | - | 843 | WP_045972633.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| XDD1_RS15690 () | 3604456..3605097 | - | 642 | WP_045972635.1 | ADP-ribose diphosphatase | - |
| XDD1_RS15695 () | 3605317..3606681 | + | 1365 | WP_045972637.1 | outer membrane channel protein TolC | - |
| XDD1_RS15700 () | 3606869..3607540 | + | 672 | WP_197541042.1 | DUF1190 family protein | - |
| XDD1_RS15705 () | 3607547..3608707 | + | 1161 | WP_045972640.1 | glutathionylspermidine synthase family protein | - |
| XDD1_RS15710 () | 3608713..3609492 | - | 780 | WP_045972642.1 | 4,5-DOPA dioxygenase extradiol | - |
| XDD1_RS15715 () | 3609730..3610383 | - | 654 | WP_045972644.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| XDD1_RS15720 () | 3610869..3611144 | + | 276 | WP_045972646.1 | accessory factor UbiK family protein | - |
| XDD1_RS15725 () | 3611231..3612655 | - | 1425 | WP_045972648.1 | Bifunctional protein HldE | VF |
| XDD1_RS15730 () | 3612741..3615593 | - | 2853 | WP_045972650.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| XDD1_RS15735 () | 3615657..3616640 | - | 984 | WP_045972652.1 | inorganic triphosphatase | - |
| XDD1_RS15740 () | 3616891..3617511 | + | 621 | WP_045972654.1 | SH3 domain-containing protein | - |
| XDD1_RS15745 () | 3617539..3618696 | + | 1158 | WP_045972656.1 | CCA tRNA nucleotidyltransferase | - |
| XDD1_RS15750 () | 3618777..3619130 | - | 354 | WP_045973723.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| XDD1_RS15755 () | 3619240..3619899 | + | 660 | WP_045972658.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| XDD1_RS15760 () | 3620038..3621075 | - | 1038 | WP_045972661.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| XDD1_RS15770 () | 3621519..3621734 | + | 216 | WP_001144069.1 | 30S ribosomal protein S21 | - |
| XDD1_RS15775 () | 3621849..3623597 | + | 1749 | WP_045972665.1 | DNA primase | - |
| XDD1_RS15780 () | 3623880..3625727 | + | 1848 | WP_045972667.1 | RNA polymerase sigma factor RpoD | - |
| XDD1_RS15785 () | 3625784..3626563 | - | 780 | WP_045972669.1 | GNAT family N-acetyltransferase | - |
| XDD1_RS15795 () | 3627619..3628032 | - | 414 | WP_038268972.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| XDD1_RS19690 () | 3628088..3628264 | - | 177 | WP_038268917.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| XDD1_RS15805 () | 3628608..3630245 | - | 1638 | WP_045972671.1 | hypothetical protein | - |
| XDD1_RS15810 () | 3630232..3630777 | - | 546 | WP_045972673.1 | hypothetical protein | - |
| XDD1_RS15815 () | 3630749..3631477 | - | 729 | WP_045971827.1 | hypothetical protein | - |
| XDD1_RS15820 () | 3631477..3631902 | - | 426 | WP_045972675.1 | tail fiber assembly protein | - |
| XDD1_RS18515 () | 3631904..3633697 | - | 1794 | WP_052705731.1 | phage tail protein | - |
| XDD1_RS15830 () | 3633709..3634365 | - | 657 | WP_045971830.1 | protein phage | - |
| XDD1_RS15835 () | 3634358..3635542 | - | 1185 | WP_045971831.1 | baseplate J/gp47 family protein | - |
| XDD1_RS15840 () | 3635532..3635867 | - | 336 | WP_045971832.1 | DUF2590 family protein | - |
| XDD1_RS15845 () | 3635860..3638091 | - | 2232 | WP_045971833.1 | phage tail tape measure protein | - |
| XDD1_RS15850 () | 3638279..3638545 | - | 267 | WP_045971834.1 | putative phage tail assembly chaperone | - |
| XDD1_RS15860 () | 3638648..3639037 | - | 390 | WP_045971837.1 | hypothetical protein | - |
| XDD1_RS15865 () | 3639037..3639375 | - | 339 | WP_045971839.1 | M15 family metallopeptidase | - |
| XDD1_RS15870 () | 3639372..3639665 | - | 294 | WP_038268946.1 | phage holin family protein | - |
| XDD1_RS15875 () | 3639677..3640132 | - | 456 | WP_045971842.1 | DUF2597 family protein | - |
| XDD1_RS15880 () | 3640129..3641253 | - | 1125 | WP_197541034.1 | DUF2586 domain-containing protein | - |
| XDD1_RS15885 () | 3641272..3641943 | - | 672 | WP_045972677.1 | phage virion morphogenesis protein | - |
| XDD1_RS15890 () | 3641940..3642437 | - | 498 | WP_045972679.1 | phage tail protein | - |
| XDD1_RS15895 () | 3642434..3642886 | - | 453 | WP_084721059.1 | head completion/stabilization protein | - |
| XDD1_RS15900 () | 3642991..3643695 | - | 705 | WP_045971851.1 | terminase | - |
| XDD1_RS15905 () | 3643695..3644726 | - | 1032 | WP_045972681.1 | phage major capsid protein, P2 family | - |
| XDD1_RS15910 () | 3644758..3645588 | - | 831 | WP_045972683.1 | GPO family capsid scaffolding protein | - |
| XDD1_RS15915 () | 3645767..3647545 | + | 1779 | WP_045971855.1 | terminase family protein | - |
| XDD1_RS15920 () | 3647545..3648576 | + | 1032 | WP_045972684.1 | phage portal protein | - |
| XDD1_RS15925 () | 3648573..3648893 | + | 321 | WP_045972687.1 | ogr/Delta-like zinc finger family protein | - |
| XDD1_RS15930 () | 3648864..3649082 | - | 219 | WP_156979664.1 | hypothetical protein | - |
| XDD1_RS15935 () | 3649167..3651407 | - | 2241 | WP_084721152.1 | replication endonuclease | - |
| XDD1_RS15940 () | 3651476..3651943 | - | 468 | WP_045972691.1 | hypothetical protein | - |
| XDD1_RS15945 () | 3651945..3652166 | - | 222 | WP_045971862.1 | TraR/DksA family transcriptional regulator | - |
| XDD1_RS15950 () | 3652159..3652362 | - | 204 | WP_045971864.1 | DUF2732 family protein | - |
| XDD1_RS15955 () | 3652442..3652798 | - | 357 | WP_045971866.1 | DUF5347 domain-containing protein | - |
| XDD1_RS15960 () | 3652947..3653456 | - | 510 | WP_045972693.1 | phage regulatory CII family protein | - |
| XDD1_RS15965 () | 3653487..3653750 | - | 264 | WP_045972695.1 | hypothetical protein | - |
| XDD1_RS15970 () | 3653869..3654450 | + | 582 | WP_045972697.1 | phage repressor protein CI | - |
| XDD1_RS15975 () | 3654447..3655484 | + | 1038 | WP_045972699.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| XDD1_RS15980 () | 3655966..3656355 | + | 390 | WP_045972701.1 | hypothetical protein | - |
| XDD1_RS15985 () | 3656468..3657541 | + | 1074 | WP_045972703.1 | SAM-dependent methyltransferase | - |
| XDD1_RS15990 () | 3657555..3658274 | + | 720 | WP_045972706.1 | beta-ketoacyl synthase chain length factor | - |
| XDD1_RS15995 () | 3658279..3659067 | + | 789 | WP_148886115.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| XDD1_RS16000 () | 3659086..3659343 | + | 258 | WP_045972709.1 | acyl carrier protein | - |
| XDD1_RS16005 () | 3659355..3659606 | + | 252 | WP_045972712.1 | acyl carrier protein | - |
| XDD1_RS16010 () | 3659665..3660219 | + | 555 | WP_167541648.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|