MGE detailed information
MGE type: Prophage MGE length: 68150 bp
Accession: NZ_CP127252 Location: 3064911..3133060 Organism: Escherichia coli strain C41 Replicon: chromosome
Accession: NZ_CP127252 Location: 3064911..3133060 Organism: Escherichia coli strain C41 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQ971_RS14840 (3060301) | 3060301..3060999 | + | 699 | WP_000577184.1 | GntR family transcriptional regulator | - |
| QQ971_RS14845 (3061044) | 3061044..3061943 | - | 900 | WP_000087192.1 | O-acetylserine/cysteine exporter | - |
| QQ971_RS14850 (3062138) | 3062138..3063325 | + | 1188 | WP_286004708.1 | efflux MFS transporter YdeE | - |
| QQ971_RS14855 (3063452) | 3063452..3063547 | + | 96 | WP_000901362.1 | protein MgtS | - |
| QQ971_RS14860 (3063547) | 3063547..3063651 | + | 105 | WP_211180496.1 | protein MgtT | - |
| QQ971_RS14865 (3063766) | 3063766..3064656 | - | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| QQ971_RS14870 (3064911) | 3064911..3065303 | - | 393 | WP_000671744.1 | YdeI family stress tolerance OB fold protein | - |
| QQ971_RS14875 (3065579) | 3065579..3066097 | + | 519 | WP_001024810.1 | 2-oxo-tetronate isomerase | - |
| QQ971_RS14880 (3066142) | 3066142..3068187 | - | 2046 | WP_001299399.1 | peptidyl-dipeptidase Dcp | - |
| QQ971_RS14885 (3068324) | 3068324..3069070 | + | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| QQ971_RS14890 (3069159) | 3069159..3069845 | + | 687 | WP_286004709.1 | DNA-binding transcriptional regulator rspR | - |
| QQ971_RS14895 (3070022) | 3070022..3070225 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QQ971_RS14900 (3070261) | 3070261..3071721 | - | 1461 | WP_000527781.1 | mannitol dehydrogenase family protein | - |
| QQ971_RS14905 (3071810) | 3071810..3073093 | - | 1284 | Protein_2905 | MHS family MFS transporter YdfJ | - |
| QQ971_RS14910 (3073698) | 3073698..3073811 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QQ971_RS14915 (3073880) | 3073880..3074113 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QQ971_RS14920 (3074430) | 3074430..3075020 | + | 591 | WP_097313997.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QQ971_RS14925 (3075118) | 3075118..3075693 | - | 576 | WP_286004710.1 | tail fiber assembly protein | - |
| QQ971_RS14930 (3075693) | 3075693..3079091 | - | 3399 | WP_137583968.1 | prophage tail fiber N-terminal domain-containing protein | - |
| QQ971_RS14935 (3079156) | 3079156..3079755 | - | 600 | WP_001233090.1 | Outer membrane protein X | VF |
| QQ971_RS14940 (3079826) | 3079826..3083323 | - | 3498 | WP_000515477.1 | host specificity protein J | - |
| QQ971_RS14945 (3083383) | 3083383..3083955 | - | 573 | WP_000847666.1 | tail assembly protein | - |
| QQ971_RS14950 (3083952) | 3083952..3084695 | - | 744 | WP_112045484.1 | C40 family peptidase | - |
| QQ971_RS14955 (3084701) | 3084701..3085399 | - | 699 | WP_001152639.1 | phage minor tail protein L | - |
| QQ971_RS14960 (3085399) | 3085399..3085728 | - | 330 | WP_000847379.1 | phage tail protein | - |
| QQ971_RS14965 (3085725) | 3085725..3088304 | - | 2580 | WP_000840349.1 | phage tail tape measure protein | - |
| QQ971_RS14970 (3088297) | 3088297..3088731 | - | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| QQ971_RS14975 (3088713) | 3088713..3089135 | - | 423 | WP_000479142.1 | phage minor tail protein G | - |
| QQ971_RS14980 (3089151) | 3089151..3089891 | - | 741 | WP_001358372.1 | phage tail protein | - |
| QQ971_RS14985 (3089899) | 3089899..3090294 | - | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| QQ971_RS14990 (3090291) | 3090291..3090869 | - | 579 | WP_000975081.1 | phage tail protein | - |
| QQ971_RS14995 (3090881) | 3090881..3091234 | - | 354 | WP_000785282.1 | head-tail joining protein | - |
| QQ971_RS15000 (3091246) | 3091246..3091641 | - | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| QQ971_RS15005 (3091683) | 3091683..3092708 | - | 1026 | WP_000063250.1 | major capsid protein | - |
| QQ971_RS15010 (3092764) | 3092764..3093096 | - | 333 | WP_001358225.1 | head decoration protein | - |
| QQ971_RS15015 (3093106) | 3093106..3094425 | - | 1320 | WP_000123248.1 | S49 family peptidase | - |
| QQ971_RS15020 (3094406) | 3094406..3096007 | - | 1602 | WP_001345555.1 | phage portal protein | - |
| QQ971_RS15025 (3096004) | 3096004..3096210 | - | 207 | WP_000198149.1 | gpW family protein | - |
| QQ971_RS15030 (3096207) | 3096207..3098132 | - | 1926 | WP_001027295.1 | phage terminase large subunit family protein | - |
| QQ971_RS15035 (3098107) | 3098107..3098652 | - | 546 | WP_000453611.1 | DNA-packaging protein | - |
| QQ971_RS15040 (3099041) | 3099041..3099274 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QQ971_RS15045 (3099332) | 3099332..3099742 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QQ971_RS15050 (3099894) | 3099894..3100067 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QQ971_RS15055 (3100239) | 3100239..3100469 | - | 231 | WP_000720962.1 | protein YnfN | - |
| QQ971_RS15060 (3100474) | 3100474..3100539 | - | 66 | WP_122134696.1 | small protein YnfR | - |
| QQ971_RS15065 (3100542) | 3100542..3100730 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| QQ971_RS15070 (3100741) | 3100741..3100953 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QQ971_RS15075 (3101318) | 3101318..3101815 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QQ971_RS15080 (3101812) | 3101812..3102345 | - | 534 | WP_001092971.1 | lysozyme | - |
| QQ971_RS15085 (3102342) | 3102342..3102653 | - | 312 | WP_000189915.1 | YdfR family protein | - |
| QQ971_RS15090 (3102658) | 3102658..3102873 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QQ971_RS15095 (3103093) | 3103093..3103263 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QQ971_RS15100 (3103627) | 3103627..3103842 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QQ971_RS15105 (3104143) | 3104143..3104355 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QQ971_RS15110 (3104410) | 3104410..3104499 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| QQ971_RS15115 (3104777) | 3104777..3105529 | - | 753 | WP_001047135.1 | antitermination protein | - |
| QQ971_RS15120 (3105543) | 3105543..3106592 | - | 1050 | WP_089638881.1 | DUF968 domain-containing protein | - |
| QQ971_RS15125 (3106594) | 3106594..3106872 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| QQ971_RS15130 (3106939) | 3106939..3107190 | - | 252 | WP_000980994.1 | protein Rem | - |
| QQ971_RS15135 (3107407) | 3107407..3107562 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QQ971_RS15140 (3107634) | 3107634..3107921 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QQ971_RS15145 (3107921) | 3107921..3108160 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QQ971_RS15150 (3108185) | 3108185..3108490 | + | 306 | WP_001326990.1 | protein YdfV | - |
| QQ971_RS15155 (3108693) | 3108693..3109025 | + | 333 | WP_001317460.1 | FlxA-like family protein | - |
| QQ971_RS15160 (3109462) | 3109462..3109611 | - | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QQ971_RS15165 (3109732) | 3109732..3110394 | - | 663 | Protein_2957 | ISNCY family transposase ISCARN112 | Transposase |
| QQ971_RS15170 (3110432) | 3110432..3110803 | - | 372 | WP_001406656.1 | ISNCY family transposase ISRel10 | Transposase |
| QQ971_RS15175 (3111572) | 3111572..3111859 | - | 288 | Protein_2959 | hypothetical protein | - |
| QQ971_RS15180 (3112337) | 3112337..3112826 | - | 490 | Protein_2960 | class I SAM-dependent methyltransferase | - |
| QQ971_RS15185 (3112823) | 3112823..3113245 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| QQ971_RS15190 (3113286) | 3113286..3114251 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| QQ971_RS15195 (3114232) | 3114232..3114753 | - | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| QQ971_RS15200 (3114737) | 3114737..3114967 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QQ971_RS15205 (3115051) | 3115051..3115458 | + | 408 | WP_040089727.1 | DNA-binding transcriptional dual regulator DicA | - |
| QQ971_RS15210 (3115625) | 3115625..3115780 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QQ971_RS15215 (3115782) | 3115782..3115910 | + | 129 | WP_000344930.1 | protein YdfB | - |
| QQ971_RS15220 (3115940) | 3115940..3116158 | + | 219 | WP_001171942.1 | protein YdfC | - |
| QQ971_RS15225 (3116726) | 3116726..3116914 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QQ971_RS15230 (3116911) | 3116911..3117102 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QQ971_RS15235 (3117196) | 3117196..3119667 | + | 2472 | WP_040092551.1 | exonuclease | - |
| QQ971_RS15240 (3119740) | 3119740..3119991 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| QQ971_RS15245 (3120026) | 3120026..3121306 | + | 1281 | WP_040092553.1 | Putative defective protein IntQ ; Integrase | Integrase |
| QQ971_RS15250 (3121494) | 3121494..3122513 | - | 1020 | WP_000836057.1 | Zn-dependent oxidoreductase | - |
| QQ971_RS15255 (3122525) | 3122525..3123739 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QQ971_RS15260 (3123945) | 3123945..3124271 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| QQ971_RS15265 (3124406) | 3124406..3124747 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| QQ971_RS15270 (3124782) | 3124782..3125342 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QQ971_RS15275 (3125345) | 3125345..3126055 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QQ971_RS15280 (3126163) | 3126163..3126468 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| QQ971_RS15285 (3126667) | 3126667..3129093 | + | 2427 | WP_050940319.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QQ971_RS15290 (3129154) | 3129154..3131577 | + | 2424 | WP_001342196.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QQ971_RS15295 (3131588) | 3131588..3132204 | + | 617 | Protein_2983 | dimethylsulfoxide reductase subunit B | - |
| QQ971_RS15300 (3132206) | 3132206..3133060 | + | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QQ971_RS15305 (3133103) | 3133103..3133717 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QQ971_RS15310 (3133877) | 3133877..3135169 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QQ971_RS15315 (3135122) | 3135122..3135817 | - | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| QQ971_RS15320 (3135942) | 3135942..3137162 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|