MGE detailed information
MGE type: Conjugative plasmid MGE length: 53818 bp
Accession: NZ_CP127048 Location: 1..53818 Organism: Pseudomonas amygdali pv. lachrymans strain YM7902 Replicon: plasmid pPlaYM7902C
Accession: NZ_CP127048 Location: 1..53818 Organism: Pseudomonas amygdali pv. lachrymans strain YM7902 Replicon: plasmid pPlaYM7902C
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QO021_RS31030 (QO021_31025) | 18..596 | - | 579 | WP_005746172.1 | AAA family ATPase | - |
| QO021_RS31035 (QO021_31030) | 596..1252 | - | 657 | WP_044299722.1 | 2OG-Fe(II) oxygenase family protein | - |
| QO021_RS31040 (QO021_31035) | 1289..2491 | - | 1203 | WP_005746174.1 | aspartate aminotransferase family protein | - |
| QO021_RS31045 (QO021_31040) | 2532..3566 | - | 1035 | WP_005746175.1 | sulfotransferase family protein | - |
| QO021_RS31050 (QO021_31045) | 3584..4504 | - | 921 | WP_005746176.1 | TauD/TfdA family dioxygenase | - |
| QO021_RS31055 (QO021_31050) | 4650..5297 | - | 648 | WP_005746177.1 | histidine phosphatase family protein | - |
| QO021_RS31060 (QO021_31055) | 5639..6574 | - | 936 | WP_005746178.1 | AvrD family protein | - |
| QO021_RS31065 (QO021_31060) | 6932..8161 | - | 1230 | WP_005746179.1 | IS91 family transposase IS801 | Transposase |
| QO021_RS31070 (QO021_31065) | 8918..9895 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| QO021_RS31075 (QO021_31070) | 10395..11372 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| QO021_RS31080 (QO021_31075) | 11669..12811 | + | 1143 | WP_005746165.1 | IQ calmodulin-binding motif-containing protein | - |
| QO021_RS31085 (QO021_31080) | 13230..13511 | - | 282 | WP_002556029.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| QO021_RS31090 (QO021_31085) | 13511..13699 | - | 189 | WP_002556028.1 | hypothetical protein | Antitoxin Detail |
| QO021_RS31095 (QO021_31090) | 13888..14523 | - | 636 | WP_054068142.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| QO021_RS31100 (QO021_31095) | 14712..15470 | + | 759 | WP_227024931.1 | ParA family protein | - |
| QO021_RS31105 (QO021_31100) | 15506..15760 | + | 255 | WP_003381801.1 | hypothetical protein | - |
| QO021_RS31110 (QO021_31105) | 16185..16850 | - | 666 | WP_004667059.1 | LexA family transcriptional regulator | - |
| QO021_RS31115 (QO021_31110) | 16938..17168 | + | 231 | WP_032704469.1 | Cro/CI family transcriptional regulator | - |
| QO021_RS31120 (QO021_31115) | 17518..18207 | + | 690 | WP_005746161.1 | Type IV secretion system protein virB1 | VF |
| QO021_RS31125 (QO021_31120) | 18204..18542 | + | 339 | WP_017279422.1 | hypothetical protein | - |
| QO021_RS31130 (QO021_31125) | 18555..19031 | + | 477 | WP_080544547.1 | VirB3 family type IV secretion system protein | - |
| QO021_RS31135 (QO021_31130) | 18970..21444 | + | 2475 | WP_054068314.1 | VirB4 family type IV secretion system protein | - |
| QO021_RS31140 (QO021_31135) | 21441..22127 | + | 687 | WP_004667979.1 | P-type DNA transfer protein VirB5 | - |
| QO021_RS31145 (QO021_31140) | 22160..22525 | + | 366 | WP_004643103.1 | hypothetical protein | - |
| QO021_RS31150 (QO021_31145) | 22536..23468 | + | 933 | WP_004667984.1 | type IV secretion system protein | - |
| QO021_RS31155 (QO021_31150) | 23542..23808 | + | 267 | WP_005746157.1 | hypothetical protein | - |
| QO021_RS31160 (QO021_31155) | 23845..24633 | + | 789 | WP_004667986.1 | hypothetical protein | VF |
| QO021_RS31165 (QO021_31160) | 24623..25432 | + | 810 | WP_004667987.1 | P-type conjugative transfer protein VirB9 | - |
| QO021_RS31170 (QO021_31165) | 25419..26807 | + | 1389 | WP_004667989.1 | hypothetical protein | VF |
| QO021_RS31175 (QO021_31170) | 26817..27872 | + | 1056 | WP_005746155.1 | Type IV secretion system protein VirB11 | VF |
| QO021_RS31180 (QO021_31175) | 27886..28272 | + | 387 | WP_005746154.1 | hypothetical protein | - |
| QO021_RS31185 (QO021_31180) | 28257..28622 | + | 366 | WP_004667995.1 | hypothetical protein | - |
| QO021_RS31190 (QO021_31185) | 28669..28935 | + | 267 | WP_004644125.1 | hypothetical protein | - |
| QO021_RS31195 (QO021_31190) | 29060..31471 | + | 2412 | WP_044299713.1 | ATP-binding protein | - |
| QO021_RS31200 (QO021_31195) | 31587..31820 | + | 234 | WP_004666680.1 | hypothetical protein | - |
| QO021_RS31205 (QO021_31200) | 31820..33493 | + | 1674 | WP_005746152.1 | type IV secretory system conjugative DNA transfer family protein | - |
| QO021_RS31210 (QO021_31205) | 33533..33895 | + | 363 | WP_005746150.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| QO021_RS31215 (QO021_31210) | 33923..36088 | + | 2166 | WP_054068313.1 | type IA DNA topoisomerase | - |
| QO021_RS31220 (QO021_31215) | 36115..36399 | + | 285 | WP_046835437.1 | hypothetical protein | - |
| QO021_RS31225 (QO021_31220) | 36427..37032 | + | 606 | WP_046835438.1 | single-stranded DNA-binding protein | - |
| QO021_RS31230 (QO021_31225) | 37342..38061 | + | 720 | WP_046835439.1 | StbB family protein | - |
| QO021_RS31235 (QO021_31230) | 38058..38630 | + | 573 | WP_046835440.1 | hypothetical protein | - |
| QO021_RS31240 (QO021_31235) | 38649..39068 | - | 420 | WP_046835441.1 | hypothetical protein | - |
| QO021_RS31245 (QO021_31240) | 39410..40135 | + | 726 | WP_046835442.1 | relaxosome protein | - |
| QO021_RS31250 (QO021_31245) | 40125..41375 | + | 1251 | WP_052764764.1 | hypothetical protein | Relaxase |
| QO021_RS31255 (QO021_31250) | 41507..41752 | + | 246 | WP_005746137.1 | hypothetical protein | VF |
| QO021_RS31260 (QO021_31255) | 41830..41967 | + | 138 | WP_005746136.1 | hypothetical protein | - |
| QO021_RS31265 (QO021_31260) | 42099..42548 | + | 450 | WP_005746135.1 | GntR family transcriptional regulator | - |
| QO021_RS31270 (QO021_31265) | 42607..42834 | + | 228 | WP_005746134.1 | hypothetical protein | - |
| QO021_RS31275 (QO021_31270) | 43232..44518 | + | 1287 | WP_122314201.1 | replication initiation protein | - |
| QO021_RS31280 (QO021_31275) | 44769..45056 | + | 288 | WP_004667956.1 | HU family DNA-binding protein | - |
| QO021_RS31285 (QO021_31280) | 45201..45899 | + | 699 | WP_005741149.1 | GNAT family N-acetyltransferase | - |
| QO021_RS31290 (QO021_31285) | 46353..46508 | + | 156 | WP_227024930.1 | DUF4113 domain-containing protein | - |
| QO021_RS31295 (QO021_31290) | 47825..49351 | - | 1527 | WP_054068140.1 | IS66 family transposase ISPpu19 | Transposase |
| QO021_RS31300 (QO021_31295) | 49413..49748 | - | 336 | WP_046835270.1 | IS66 family transposase ISPpu19 | Transposase |
| QO021_RS31305 (QO021_31300) | 49745..50077 | - | 333 | WP_005741230.1 | transposase | - |
| QO021_RS31310 (QO021_31305) | 50385..51266 | + | 882 | WP_052764772.1 | hypothetical protein | - |
| QO021_RS31315 (QO021_31310) | 51457..52434 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| QO021_RS31320 (QO021_31315) | 53181..53681 | + | 501 | WP_230852697.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|