MGE detailed information
MGE type: Genomic_island MGE length: 10616 bp
Accession: NZ_CP126323 Location: 3967768..3978383 Organism: Salmonella enterica subsp. enterica strain CY16 Replicon: chromosome
Accession: NZ_CP126323 Location: 3967768..3978383 Organism: Salmonella enterica subsp. enterica strain CY16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN087_RS19165 (3963673) | 3963673..3964128 | + | 456 | WP_001747397.1 | multidrug/biocide efflux PACE transporter | - |
| QN087_RS19170 (3964270) | 3964270..3965499 | + | 1230 | WP_001747398.1 | amino acid permease | - |
| QN087_RS19175 (3965530) | 3965530..3965802 | - | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| QN087_RS19180 (3965923) | 3965923..3966813 | + | 891 | WP_001747399.1 | nickel/cobalt efflux protein RcnA | - |
| QN087_RS19185 (3967023) | 3967023..3967781 | - | 759 | WP_001747400.1 | hypothetical protein | - |
| QN087_RS19190 (3967768) | 3967768..3968280 | - | 513 | WP_000336257.1 | CaiF/GrlA family transcriptional regulator | - |
| QN087_RS19195 (3968424) | 3968424..3969500 | - | 1077 | WP_001747401.1 | hypothetical protein | - |
| QN087_RS19200 (3969497) | 3969497..3970240 | - | 744 | WP_001747402.1 | Chaperone protein PapD | VF |
| QN087_RS19205 (3970281) | 3970281..3972770 | - | 2490 | WP_000705504.1 | Outer membrane usher protein PapC | VF |
| QN087_RS19210 (3972890) | 3972890..3973471 | - | 582 | WP_001747403.1 | putative fimbrial-like protein YbgD | VF |
| QN087_RS19215 (3974190) | 3974190..3974822 | - | 633 | WP_000835265.1 | YfdX family protein | - |
| QN087_RS19220 (3974869) | 3974869..3975405 | - | 537 | WP_001747404.1 | Attachment invasion locus protein | VF |
| QN087_RS19225 (3976213) | 3976213..3976611 | - | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| QN087_RS19230 (3976611) | 3976611..3976856 | - | 246 | WP_031606523.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| QN087_RS19235 (3977046) | 3977046..3977297 | + | 252 | WP_001576352.1 | hypothetical protein | - |
| QN087_RS19240 (3977577) | 3977577..3978383 | + | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| QN087_RS19250 (3978668) | 3978668..3979444 | - | 777 | WP_001747405.1 | amidase activator ActS | - |
| QN087_RS19255 (3979709) | 3979709..3980254 | + | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| QN087_RS19260 (3980330) | 3980330..3981847 | - | 1518 | WP_000003342.1 | lysine--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.01 |