MGE detailed information
MGE type: Prophage MGE length: 87007 bp
Accession: NZ_CP126323 Location: 2579421..2666427 Organism: Salmonella enterica subsp. enterica strain CY16 Replicon: chromosome
Accession: NZ_CP126323 Location: 2579421..2666427 Organism: Salmonella enterica subsp. enterica strain CY16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN087_RS12340 () | 2574858..2576231 | + | 1374 | WP_001747327.1 | MFS transporter | - |
| QN087_RS12345 () | 2576279..2577160 | - | 882 | WP_000984498.1 | protease HtpX | - |
| QN087_RS12350 () | 2577353..2579401 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| QN087_RS12355 () | 2579421..2580107 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| QN087_RS12360 () | 2580205..2580702 | - | 498 | WP_001674914.1 | GAF domain-containing protein | - |
| QN087_RS12365 () | 2580831..2582114 | + | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| QN087_RS12370 () | 2582083..2584716 | + | 2634 | WP_014341101.1 | Intermembrane transport protein YebT | VF |
| QN087_RS12375 () | 2584794..2586233 | + | 1440 | WP_023164993.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QN087_RS12380 () | 2586351..2586587 | + | 237 | WP_024131108.1 | YebV family protein | - |
| QN087_RS12385 () | 2586698..2586889 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| QN087_RS12390 () | 2586908..2587558 | - | 651 | WP_000986172.1 | protein-serine/threonine phosphatase | - |
| QN087_RS12395 () | 2587782..2587946 | - | 165 | WP_001134856.1 | membrane protein | - |
| QN087_RS12400 () | 2588232..2588954 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| QN087_RS12405 () | 2589638..2590033 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| QN087_RS12410 () | 2590363..2590839 | + | 477 | WP_000030934.1 | hypothetical protein | - |
| QN087_RS12415 () | 2591212..2591631 | - | 420 | WP_001025514.1 | GNAT family N-acetyltransferase | - |
| QN087_RS12420 () | 2592004..2592273 | + | 270 | WP_001576019.1 | hypothetical protein | - |
| QN087_RS12425 () | 2592439..2592579 | + | 141 | WP_001576018.1 | hypothetical protein | - |
| QN087_RS12430 () | 2592725..2593932 | - | 1208 | Protein_2439 | IS256 family transposase ISEc39 | Transposase |
| QN087_RS12435 () | 2594002..2594468 | + | 467 | Protein_2440 | tyrosine-type recombinase/integrase | - |
| QN087_RS12440 () | 2595718..2596632 | + | 915 | WP_001233445.1 | DMT family transporter | - |
| QN087_RS12445 () | 2596765..2596923 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| QN087_RS12450 () | 2596933..2597547 | + | 615 | WP_000848072.1 | disulfide bond formation protein B | - |
| QN087_RS12455 () | 2597874..2598041 | - | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| QN087_RS12460 () | 2598035..2598181 | + | 147 | WP_014341103.1 | hypothetical protein | - |
| QN087_RS12465 () | 2598695..2598820 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| QN087_RS12470 () | 2598820..2599000 | + | 181 | Protein_2447 | IS3 family transposase | - |
| QN087_RS12475 () | 2599390..2599590 | + | 201 | WP_001576015.1 | PagK family vesicle-borne virulence factor | - |
| QN087_RS12480 () | 2599687..2600198 | - | 512 | Protein_2449 | tail fiber assembly protein | - |
| QN087_RS12485 () | 2600211..2600498 | - | 288 | Protein_2450 | macro domain-containing protein | - |
| QN087_RS12490 () | 2600508..2602660 | - | 2153 | Protein_2451 | prophage tail fiber N-terminal domain-containing protein | - |
| QN087_RS12495 () | 2602714..2602956 | - | 243 | WP_000178848.1 | hypothetical protein | - |
| QN087_RS12500 () | 2602995..2603858 | - | 864 | WP_072100756.1 | DUF1983 domain-containing protein | - |
| QN087_RS12505 () | 2603898..2606346 | - | 2449 | Protein_2454 | host specificity protein J | - |
| QN087_RS12510 () | 2606418..2607122 | - | 705 | WP_001576012.1 | tail assembly protein | - |
| QN087_RS12515 () | 2607026..2607757 | - | 732 | WP_000606352.1 | C40 family peptidase | - |
| QN087_RS12520 () | 2607767..2608462 | - | 696 | WP_001152416.1 | phage minor tail protein L | - |
| QN087_RS12525 () | 2608552..2609085 | + | 534 | WP_000877926.1 | Superoxide dismutase [Cu-Zn] 1 | VF |
| QN087_RS12530 () | 2609202..2609699 | - | 498 | WP_000725267.1 | Attachment invasion locus protein | VF |
| QN087_RS12535 () | 2609798..2610130 | - | 333 | WP_000978295.1 | phage tail protein | - |
| QN087_RS12540 () | 2610127..2613114 | - | 2988 | WP_077904894.1 | phage tail tape measure protein | - |
| QN087_RS12545 () | 2613194..2613523 | - | 330 | WP_010989009.1 | phage tail assembly protein T | - |
| QN087_RS12550 () | 2613520..2613918 | - | 399 | WP_000478857.1 | phage minor tail protein G | - |
| QN087_RS12555 () | 2613964..2614713 | - | 750 | WP_000132760.1 | phage tail protein | - |
| QN087_RS12560 () | 2614725..2615126 | - | 402 | WP_000196704.1 | phage minor tail U family protein | - |
| QN087_RS12565 () | 2615123..2615689 | - | 567 | WP_000453192.1 | phage tail protein | - |
| QN087_RS12570 () | 2615670..2615969 | - | 300 | WP_000774239.1 | ATP-binding protein | - |
| QN087_RS12575 () | 2615962..2616285 | - | 324 | WP_001107908.1 | DUF2190 family protein | - |
| QN087_RS12580 () | 2616376..2618457 | - | 2082 | WP_010989008.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| QN087_RS12585 () | 2618381..2619928 | - | 1548 | WP_001009212.1 | phage portal protein | - |
| QN087_RS12590 () | 2619925..2620131 | - | 207 | WP_000196190.1 | hypothetical protein | - |
| QN087_RS12595 () | 2620128..2622266 | - | 2139 | WP_000989241.1 | phage terminase large subunit family protein | - |
| QN087_RS12600 () | 2622223..2622756 | - | 534 | WP_000371784.1 | DUF1441 family protein | - |
| QN087_RS12605 () | 2622964..2623443 | - | 480 | WP_001541990.1 | lysis protein | - |
| QN087_RS12610 () | 2623461..2623913 | - | 453 | WP_000984586.1 | glycoside hydrolase family protein | - |
| QN087_RS12615 () | 2623897..2624226 | - | 330 | WP_001574216.1 | phage holin, lambda family | - |
| QN087_RS12620 () | 2624502..2625188 | + | 687 | WP_001574215.1 | type III secretion system effector protease GtgA | - |
| QN087_RS12625 () | 2625549..2625998 | + | 450 | WP_000798708.1 | hypothetical protein | - |
| QN087_RS12630 () | 2626372..2626899 | - | 528 | WP_000971762.1 | hypothetical protein | - |
| QN087_RS12635 () | 2626993..2627682 | - | 690 | WP_001097218.1 | bacteriophage antitermination protein Q | - |
| QN087_RS12640 () | 2627679..2627815 | - | 137 | Protein_2481 | YlcG family protein | - |
| QN087_RS12645 () | 2627812..2628033 | - | 222 | WP_254888507.1 | recombination protein NinG | - |
| QN087_RS12650 () | 2628036..2628635 | - | 600 | WP_000940753.1 | DUF1367 family protein | - |
| QN087_RS12655 () | 2628699..2628917 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| QN087_RS12660 () | 2629219..2629317 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| QN087_RS12665 () | 2629636..2631615 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| QN087_RS12670 () | 2632012..2633142 | + | 1131 | WP_000529511.1 | GGDEF domain-containing protein | - |
| QN087_RS12675 () | 2633429..2633824 | - | 396 | WP_000089416.1 | DUF977 family protein | - |
| QN087_RS12680 () | 2633837..2634379 | - | 543 | WP_158000546.1 | replication protein P | - |
| QN087_RS12685 () | 2634291..2635289 | - | 999 | WP_000729536.1 | DUF1376 domain-containing protein | - |
| QN087_RS12690 () | 2635336..2635830 | - | 495 | WP_001574210.1 | toxin YdaT family protein | - |
| QN087_RS12695 () | 2635817..2636071 | - | 255 | WP_001033912.1 | helix-turn-helix transcriptional regulator | - |
| QN087_RS12700 () | 2636170..2636568 | + | 399 | WP_001574209.1 | helix-turn-helix domain-containing protein | - |
| QN087_RS12705 () | 2637010..2637240 | - | 231 | WP_158001424.1 | hypothetical protein | - |
| QN087_RS12710 () | 2637575..2637850 | + | 276 | WP_000103933.1 | hypothetical protein | - |
| QN087_RS12715 () | 2637854..2638060 | + | 207 | WP_000682660.1 | cell division inhibitor protein | - |
| QN087_RS12720 () | 2638136..2638471 | + | 336 | WP_000799627.1 | hypothetical protein | - |
| QN087_RS12725 () | 2638612..2641302 | + | 2691 | WP_000023717.1 | exodeoxyribonuclease VIII | - |
| QN087_RS12730 () | 2641295..2642125 | + | 831 | WP_053294625.1 | recombination protein RecT | - |
| QN087_RS12735 () | 2642172..2642357 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| QN087_RS12740 () | 2642456..2642884 | + | 429 | WP_000743305.1 | hypothetical protein | - |
| QN087_RS12745 () | 2642945..2643223 | + | 279 | WP_001575998.1 | excisionase | - |
| QN087_RS12750 () | 2643198..2644277 | + | 1080 | WP_000087636.1 | hypothetical protein ; Integrase | Integrase |
| - | 2644415..2644560 | + | 146 | - | - | Antitoxin Detail |
| - | 2644417..2644520 | - | 104 | - | - | Toxin Detail |
| QN087_RS12755 () | 2644660..2645013 | - | 354 | WP_000722370.1 | YebY family protein | - |
| QN087_RS12760 () | 2645030..2645905 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| QN087_RS12765 () | 2645906..2646280 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| QN087_RS12770 () | 2646418..2646648 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| QN087_RS12775 () | 2646756..2647412 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| QN087_RS12780 () | 2647436..2648134 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| QN087_RS12785 () | 2648171..2650219 | - | 2049 | WP_001746673.1 | oligopeptidase B | - |
| QN087_RS12790 () | 2650432..2651091 | - | 660 | WP_000024715.1 | tellurite resistance TerB family protein | - |
| QN087_RS12795 () | 2651185..2651538 | - | 354 | WP_001042123.1 | protein YebF | - |
| QN087_RS12800 () | 2651606..2651896 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| QN087_RS12805 () | 2652027..2653205 | + | 1179 | WP_000173422.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| QN087_RS12810 () | 2653305..2653946 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| QN087_RS12815 () | 2653984..2655795 | - | 1812 | WP_001069114.1 | phosphogluconate dehydratase | - |
| QN087_RS12820 () | 2656030..2657505 | - | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| QN087_RS12825 () | 2657847..2658716 | + | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| QN087_RS12830 () | 2658840..2660282 | + | 1443 | WP_000091156.1 | pyruvate kinase | - |
| QN087_RS12835 () | 2660355..2661326 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| QN087_RS12840 () | 2661443..2662762 | - | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| QN087_RS12845 () | 2662778..2663722 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| QN087_RS12850 () | 2663801..2664556 | + | 756 | WP_000203023.1 | Zinc import ATP-binding protein ZnuC | VF |
| QN087_RS12855 () | 2664553..2665338 | + | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| QN087_RS12860 () | 2665417..2666427 | - | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| QN087_RS12865 () | 2666436..2667047 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| QN087_RS12870 () | 2667407..2668099 | - | 693 | WP_001680382.1 | hypothetical protein | - |
| QN087_RS12875 () | 2668308..2668907 | + | 600 | WP_000716754.1 | YebB family permuted papain-like enzyme | - |
| QN087_RS12880 () | 2668909..2669430 | - | 522 | WP_000022512.1 | crossover junction endodeoxyribonuclease RuvC | - |
| QN087_RS12885 () | 2669467..2670207 | - | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| QN087_RS12890 () | 2670237..2670689 | - | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|