Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2644415..2644560 | Replicon | chromosome |
| Accession | NZ_CP126323 | ||
| Organism | Salmonella enterica subsp. enterica strain CY16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2644417..2644520 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2644415..2644560 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN087_RS12730 | 2641295..2642125 | + | 831 | WP_053294625.1 | recombination protein RecT | - |
| QN087_RS12735 | 2642172..2642357 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| QN087_RS12740 | 2642456..2642884 | + | 429 | WP_000743305.1 | hypothetical protein | - |
| QN087_RS12745 | 2642945..2643223 | + | 279 | WP_001575998.1 | excisionase | - |
| QN087_RS12750 | 2643198..2644277 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2644415..2644560 | + | 146 | - | - | Antitoxin |
| - | 2644417..2644520 | - | 104 | - | - | Toxin |
| QN087_RS12755 | 2644660..2645013 | - | 354 | WP_000722370.1 | YebY family protein | - |
| QN087_RS12760 | 2645030..2645905 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| QN087_RS12765 | 2645906..2646280 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| QN087_RS12770 | 2646418..2646648 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| QN087_RS12775 | 2646756..2647412 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| QN087_RS12780 | 2647436..2648134 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 2579421..2666427 | 87006 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282752 NZ_CP126323:c2644520-2644417 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT282752 NZ_CP126323:2644415-2644560 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
