MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 27358 bp
Accession: NZ_CP126076 Location: 3182546..3209903 Organism: Clostridioides difficile strain CDI-01 Replicon: chromosome
Accession: NZ_CP126076 Location: 3182546..3209903 Organism: Clostridioides difficile strain CDI-01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ITJ31_RS14555 (ITJ31_014555) | 3178307..3178969 | - | 663 | WP_009891116.1 | zinc metalloprotease Zmp1 | - |
| ITJ31_RS14560 (ITJ31_014560) | 3179340..3182195 | - | 2856 | Protein_2793 | SrtB-anchored collagen-binding adhesin | - |
| ITJ31_RS14570 (ITJ31_014570) | 3182546..3183991 | - | 1446 | WP_003423078.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| ITJ31_RS14575 (ITJ31_014575) | 3184010..3184210 | - | 201 | WP_021405844.1 | helix-turn-helix domain-containing protein | - |
| ITJ31_RS14580 (ITJ31_014580) | 3184662..3184910 | - | 249 | WP_002323370.1 | helix-turn-helix domain-containing protein | - |
| ITJ31_RS14585 (ITJ31_014585) | 3184917..3185333 | - | 417 | WP_003423075.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| ITJ31_RS14590 (ITJ31_014590) | 3185781..3186659 | - | 879 | WP_003423074.1 | ParA family protein | - |
| ITJ31_RS14595 (ITJ31_014595) | 3186762..3187022 | - | 261 | Protein_2799 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| ITJ31_RS14600 (ITJ31_014600) | 3187192..3187930 | - | 739 | Protein_2800 | rRNA adenine N-6-methyltransferase | ARG |
| ITJ31_RS14605 (ITJ31_014605) | 3188040..3188396 | - | 357 | Protein_2801 | AAA family ATPase | - |
| ITJ31_RS14610 (ITJ31_014610) | 3188448..3188606 | - | 159 | WP_003423072.1 | zeta toxin family protein | Toxin Detail |
| ITJ31_RS14615 (ITJ31_014615) | 3188608..3188880 | - | 273 | WP_000301765.1 | antitoxin | Antitoxin Detail |
| ITJ31_RS14620 (ITJ31_014620) | 3188897..3189112 | - | 216 | WP_002321610.1 | peptide-binding protein | - |
| ITJ31_RS14625 (ITJ31_014625) | 3189299..3189658 | + | 360 | WP_003423065.1 | helix-turn-helix transcriptional regulator | - |
| ITJ31_RS14630 (ITJ31_014630) | 3189766..3189954 | - | 189 | WP_009269672.1 | cysteine-rich KTR domain-containing protein | - |
| ITJ31_RS14635 (ITJ31_014635) | 3190159..3190350 | - | 192 | WP_003423063.1 | hypothetical protein | - |
| ITJ31_RS14640 (ITJ31_014640) | 3190363..3191007 | - | 645 | WP_003423062.1 | ABC-2 transporter permease | - |
| ITJ31_RS14645 (ITJ31_014645) | 3191004..3191867 | - | 864 | WP_003423060.1 | ABC transporter ATP-binding protein YtrB | VF |
| ITJ31_RS14650 (ITJ31_014650) | 3191868..3192245 | - | 378 | WP_003423058.1 | GntR family transcriptional regulator | - |
| ITJ31_RS14655 (ITJ31_014655) | 3192366..3193277 | - | 912 | WP_003423057.1 | conjugal transfer protein | - |
| ITJ31_RS14660 (ITJ31_014660) | 3193293..3194300 | - | 1008 | WP_003423055.1 | hypothetical protein | VF |
| ITJ31_RS14665 (ITJ31_014665) | 3194297..3196492 | - | 2196 | WP_003423053.1 | YtxH domain-containing protein | - |
| ITJ31_RS14670 (ITJ31_014670) | 3196492..3198942 | - | 2451 | WP_003423051.1 | ATP-binding protein | - |
| ITJ31_RS14675 (ITJ31_014675) | 3198920..3199318 | - | 399 | WP_004843362.1 | conjugal transfer protein | - |
| ITJ31_RS14680 (ITJ31_014680) | 3199436..3199939 | - | 504 | WP_003423048.1 | antirestriction protein ArdA | - |
| ITJ31_RS14685 (ITJ31_014685) | 3199957..3200460 | - | 504 | WP_003423046.1 | antirestriction protein ArdA | - |
| ITJ31_RS14690 (ITJ31_014690) | 3200379..3200675 | - | 297 | WP_003423044.1 | hypothetical protein | - |
| ITJ31_RS14695 (ITJ31_014695) | 3200760..3201536 | - | 777 | WP_003423043.1 | helix-turn-helix transcriptional regulator | - |
| ITJ31_RS14700 (ITJ31_014700) | 3201740..3201961 | - | 222 | WP_002323342.1 | hypothetical protein | - |
| ITJ31_RS14705 (ITJ31_014705) | 3201962..3202096 | - | 135 | WP_003423040.1 | DUF3789 domain-containing protein | - |
| ITJ31_RS14710 (ITJ31_014710) | 3202109..3203305 | - | 1197 | WP_003423038.1 | MobT family relaxase | - |
| ITJ31_RS14715 (ITJ31_014715) | 3203489..3204883 | - | 1395 | WP_003423037.1 | FtsK/SpoIIIE domain-containing protein | - |
| ITJ31_RS14720 (ITJ31_014720) | 3204984..3205310 | - | 327 | WP_003423033.1 | hypothetical protein | - |
| ITJ31_RS14725 (ITJ31_014725) | 3205326..3205733 | - | 408 | WP_003423032.1 | helix-turn-helix transcriptional regulator | - |
| ITJ31_RS14730 (ITJ31_014730) | 3205901..3206284 | - | 384 | WP_003423022.1 | YdcP family protein | - |
| ITJ31_RS14735 (ITJ31_014735) | 3206300..3206626 | - | 327 | WP_003417601.1 | YdcP family protein | - |
| ITJ31_RS14740 (ITJ31_014740) | 3206859..3209903 | - | 3045 | WP_021401955.1 | SrtB-anchored collagen-binding adhesin | - |
| ITJ31_RS14745 (ITJ31_014745) | 3210184..3210309 | - | 126 | WP_256637738.1 | hypothetical protein | - |
| ITJ31_RS14750 (ITJ31_014750) | 3210633..3211811 | - | 1179 | WP_009891122.1 | cation diffusion facilitator family transporter | - |
| ITJ31_RS14755 (ITJ31_014755) | 3212183..3212368 | + | 186 | WP_009891124.1 | proline--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|