MGE detailed information
MGE type: Prophage MGE length: 102421 bp
Accession: NZ_CP125310 Location: 2955862..3058282 Organism: Citrobacter freundii strain CF5125 Replicon: chromosome
Accession: NZ_CP125310 Location: 2955862..3058282 Organism: Citrobacter freundii strain CF5125 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QKW62_RS14590 () | 2951300..2952673 | + | 1374 | WP_054528456.1 | MFS transporter | - |
| QKW62_RS14595 () | 2952720..2953601 | - | 882 | WP_003034964.1 | protease HtpX | - |
| QKW62_RS14600 () | 2953794..2955842 | - | 2049 | WP_054528457.1 | carboxy terminal-processing peptidase | - |
| QKW62_RS14605 () | 2955862..2956548 | - | 687 | WP_003034957.1 | RNA chaperone ProQ | - |
| QKW62_RS14610 () | 2956645..2957142 | - | 498 | WP_003034953.1 | GAF domain-containing protein | - |
| QKW62_RS14615 () | 2957271..2958554 | + | 1284 | WP_003841983.1 | membrane integrity lipid transport subunit YebS | - |
| QKW62_RS14620 () | 2958523..2961156 | + | 2634 | WP_054528458.1 | Intermembrane transport protein YebT | VF |
| QKW62_RS14625 () | 2961269..2962657 | + | 1389 | WP_054528689.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QKW62_RS14630 () | 2962758..2962994 | + | 237 | WP_029139506.1 | YebV family protein | - |
| QKW62_RS14635 () | 2963097..2963288 | + | 192 | WP_003034941.1 | YebW family protein | - |
| QKW62_RS14640 () | 2963289..2963930 | - | 642 | WP_283146350.1 | protein-serine/threonine phosphatase | - |
| QKW62_RS14645 () | 2964415..2965086 | + | 672 | WP_071684130.1 | SOS response-associated peptidase | - |
| QKW62_RS14650 () | 2965341..2965661 | + | 321 | WP_004197483.1 | hypothetical protein | - |
| QKW62_RS14660 () | 2966355..2966860 | - | 506 | Protein_2862 | LexA family transcriptional regulator | - |
| QKW62_RS14665 () | 2966891..2966971 | + | 81 | Protein_2863 | DinI family protein | - |
| QKW62_RS14670 () | 2967065..2967307 | + | 243 | WP_213707980.1 | DinI family protein | - |
| QKW62_RS14675 () | 2967311..2967544 | + | 234 | WP_139265080.1 | hypothetical protein | - |
| QKW62_RS14680 () | 2967607..2968932 | - | 1326 | WP_213730603.1 | phage tail protein | - |
| QKW62_RS14685 () | 2968942..2969886 | - | 945 | WP_213707911.1 | DUF6453 family protein | - |
| QKW62_RS14690 () | 2969886..2973122 | - | 3237 | WP_094542983.1 | DUF1983 domain-containing protein | - |
| QKW62_RS14695 () | 2973175..2973543 | - | 369 | WP_071667516.1 | hypothetical protein | - |
| QKW62_RS14700 () | 2973623..2974222 | - | 600 | WP_071667515.1 | type III secretion system translocon subunit SctE | - |
| QKW62_RS14705 () | 2974210..2974941 | - | 732 | WP_071684443.1 | C40 family peptidase | - |
| QKW62_RS14710 () | 2974954..2975727 | - | 774 | WP_071684442.1 | phage minor tail protein L | - |
| QKW62_RS14715 () | 2975736..2976086 | - | 351 | WP_071684441.1 | phage tail protein | - |
| QKW62_RS14720 () | 2976254..2976481 | + | 228 | WP_071684440.1 | hypothetical protein | - |
| QKW62_RS14725 () | 2976484..2976774 | - | 291 | WP_071684439.1 | hypothetical protein | - |
| QKW62_RS14730 () | 2976866..2977279 | - | 414 | WP_071684445.1 | hypothetical protein | - |
| QKW62_RS14735 () | 2977302..2977718 | - | 417 | WP_071684438.1 | hypothetical protein | - |
| QKW62_RS14740 () | 2977789..2980842 | - | 3054 | WP_071684437.1 | phage tail tape measure protein | - |
| QKW62_RS14745 () | 2980842..2981069 | - | 228 | WP_283146351.1 | DUF1799 domain-containing protein | - |
| QKW62_RS14750 () | 2981147..2981485 | - | 339 | WP_071684436.1 | phage tail assembly chaperone | - |
| QKW62_RS14755 () | 2981527..2982459 | - | 933 | WP_071684435.1 | phage tail tube protein | - |
| QKW62_RS14760 () | 2982506..2982937 | - | 432 | WP_230131589.1 | DUF4128 domain-containing protein | - |
| QKW62_RS14765 () | 2982945..2983544 | - | 600 | WP_032943641.1 | hypothetical protein | - |
| QKW62_RS14770 () | 2983547..2983900 | - | 354 | WP_032943642.1 | hypothetical protein | - |
| QKW62_RS14775 () | 2983902..2984384 | - | 483 | WP_032943643.1 | hypothetical protein | - |
| QKW62_RS14780 () | 2984387..2984572 | - | 186 | WP_032943644.1 | hypothetical protein | - |
| QKW62_RS14785 () | 2984612..2985751 | - | 1140 | WP_019076566.1 | P22 phage major capsid protein family protein | - |
| QKW62_RS14790 () | 2985769..2986521 | - | 753 | WP_071684434.1 | hypothetical protein | - |
| QKW62_RS14795 () | 2986842..2987948 | - | 1107 | WP_081011298.1 | phage minor head protein | - |
| QKW62_RS14800 () | 2987950..2989353 | - | 1404 | WP_054528472.1 | DUF4055 domain-containing protein | - |
| QKW62_RS14805 () | 2989358..2990662 | - | 1305 | WP_054528473.1 | terminase family protein | - |
| QKW62_RS14810 () | 2990640..2991629 | - | 990 | WP_071684432.1 | terminase small subunit | - |
| QKW62_RS14815 () | 2991906..2992361 | - | 456 | WP_021571192.1 | hypothetical protein | - |
| QKW62_RS14820 () | 2992448..2992966 | - | 519 | WP_071684431.1 | DUF2514 domain-containing protein | - |
| QKW62_RS14825 () | 2992963..2993511 | - | 549 | WP_060683645.1 | lysozyme | - |
| QKW62_RS14830 () | 2993483..2993761 | - | 279 | WP_016150496.1 | phage holin | - |
| QKW62_RS14835 () | 2994183..2995013 | - | 831 | WP_071684430.1 | antitermination protein | - |
| QKW62_RS14840 () | 2995010..2995150 | - | 141 | WP_139239327.1 | YlcG family protein | - |
| QKW62_RS14845 () | 2995147..2995758 | - | 612 | WP_283146352.1 | recombination protein NinG | - |
| QKW62_RS14850 () | 2995761..2995967 | - | 207 | WP_071684428.1 | hypothetical protein | - |
| QKW62_RS14855 () | 2995967..2996566 | - | 600 | WP_019076919.1 | DUF1367 family protein | - |
| QKW62_RS14860 () | 2996706..2996873 | - | 168 | WP_071524449.1 | hypothetical protein | - |
| QKW62_RS14865 () | 2997001..2997660 | - | 660 | WP_119174320.1 | hypothetical protein | - |
| QKW62_RS14870 () | 2997936..2998529 | - | 594 | WP_071684487.1 | ead/Ea22-like family protein | - |
| QKW62_RS14875 () | 2998526..2998810 | - | 285 | WP_223307944.1 | DUF551 domain-containing protein | - |
| QKW62_RS14880 () | 2998870..2999478 | - | 609 | WP_230131590.1 | hypothetical protein | - |
| QKW62_RS14885 () | 2999475..2999786 | - | 312 | WP_071684485.1 | hypothetical protein | - |
| QKW62_RS14890 () | 2999805..3000554 | - | 750 | WP_054528491.1 | IS21 family transposase ISRel5 | Transposase |
| QKW62_RS14895 () | 3000557..3001504 | - | 948 | WP_071684484.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| QKW62_RS14900 () | 3001672..3002211 | - | 540 | WP_071684483.1 | toxin YdaT domain-containing protein | - |
| QKW62_RS14905 () | 3002243..3002470 | - | 228 | WP_019076923.1 | hypothetical protein | - |
| QKW62_RS14910 () | 3002506..3003261 | + | 756 | WP_047418097.1 | S24 family peptidase | - |
| QKW62_RS14915 () | 3003457..3004365 | + | 909 | WP_019076925.1 | hypothetical protein | - |
| QKW62_RS14920 () | 3004455..3004835 | + | 381 | WP_019076926.1 | hypothetical protein | - |
| QKW62_RS14925 () | 3004867..3005073 | - | 207 | WP_230131697.1 | hypothetical protein | - |
| QKW62_RS14930 () | 3005419..3005625 | + | 207 | WP_016156718.1 | hypothetical protein | - |
| QKW62_RS14935 () | 3005637..3005798 | + | 162 | WP_053389201.1 | YdaE family protein | - |
| QKW62_RS14940 () | 3005938..3008829 | + | 2892 | WP_071684481.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| QKW62_RS14945 () | 3008842..3009933 | + | 1092 | WP_054528497.1 | RecT family recombinase | - |
| QKW62_RS14950 () | 3009968..3010312 | + | 345 | WP_054528498.1 | hypothetical protein | - |
| QKW62_RS14955 () | 3010305..3010508 | + | 204 | WP_054528499.1 | hypothetical protein | - |
| QKW62_RS14960 () | 3010495..3010737 | + | 243 | WP_003841647.1 | DUF4060 family protein | - |
| QKW62_RS14965 () | 3010801..3011073 | + | 273 | WP_071684411.1 | excisionase | - |
| QKW62_RS14970 () | 3011042..3012127 | + | 1086 | WP_054528500.1 | hypothetical protein ; Integrase | Integrase |
| QKW62_RS14975 () | 3012404..3012490 | + | 87 | Protein_2925 | DinI-like family protein | - |
| QKW62_RS14980 () | 3012549..3012626 | + | 78 | Protein_2926 | SOS response-associated peptidase | - |
| QKW62_RS14985 () | 3012967..3014091 | + | 1125 | WP_283146353.1 | glycosyltransferase family 4 protein | - |
| QKW62_RS14990 () | 3014492..3015817 | - | 1326 | WP_283146354.1 | phage tail protein | - |
| QKW62_RS14995 () | 3015827..3016771 | - | 945 | WP_213734336.1 | DUF6453 family protein | - |
| QKW62_RS15000 () | 3016771..3019485 | - | 2715 | WP_283146355.1 | DUF1983 domain-containing protein | - |
| QKW62_RS15005 () | 3019485..3019766 | - | 282 | WP_283146356.1 | hypothetical protein | - |
| QKW62_RS15010 () | 3019890..3020474 | - | 585 | WP_283146357.1 | hypothetical protein | - |
| QKW62_RS15015 () | 3020474..3021067 | - | 594 | WP_200003743.1 | hypothetical protein | - |
| QKW62_RS15020 () | 3021082..3024366 | - | 3285 | WP_283146358.1 | phage tail tape measure protein | - |
| QKW62_RS15025 () | 3024402..3024590 | - | 189 | WP_283146359.1 | YebO family protein | - |
| QKW62_RS15030 () | 3024649..3024939 | - | 291 | WP_283146360.1 | DUF4035 domain-containing protein | - |
| QKW62_RS15035 () | 3024951..3025322 | - | 372 | WP_100272253.1 | phage tail assembly chaperone | - |
| QKW62_RS15040 () | 3025350..3026054 | - | 705 | WP_058806108.1 | hypothetical protein | - |
| QKW62_RS15045 () | 3026112..3026459 | - | 348 | WP_058806107.1 | DUF3168 domain-containing protein | - |
| QKW62_RS15050 () | 3026456..3026905 | - | 450 | WP_283146361.1 | HK97 gp10 family phage protein | - |
| QKW62_RS15055 () | 3026902..3027240 | - | 339 | WP_283146362.1 | phage head closure protein | - |
| QKW62_RS15060 () | 3027250..3027570 | - | 321 | WP_283146363.1 | head-tail connector protein | - |
| QKW62_RS15065 () | 3027648..3028865 | - | 1218 | WP_283146364.1 | phage major capsid protein | - |
| QKW62_RS15070 () | 3028875..3029474 | - | 600 | WP_283146365.1 | HK97 family phage prohead protease | - |
| QKW62_RS15075 () | 3029467..3030693 | - | 1227 | WP_038642109.1 | phage portal protein | - |
| QKW62_RS15080 () | 3030683..3030832 | - | 150 | WP_163208360.1 | hypothetical protein | - |
| QKW62_RS15085 () | 3030841..3032598 | - | 1758 | WP_283146366.1 | terminase large subunit | - |
| QKW62_RS15090 () | 3032598..3033095 | - | 498 | WP_200003750.1 | phage terminase small subunit P27 family | - |
| QKW62_RS15095 () | 3033252..3033602 | - | 351 | WP_283146367.1 | HNH endonuclease signature motif containing protein | - |
| QKW62_RS15100 () | 3033590..3033823 | - | 234 | WP_046671254.1 | hypothetical protein | - |
| QKW62_RS15105 () | 3033838..3034566 | - | 729 | WP_283146368.1 | Fur-regulated protein | - |
| QKW62_RS15110 () | 3034580..3034717 | - | 138 | WP_283146369.1 | hypothetical protein | - |
| QKW62_RS15115 () | 3034878..3035381 | - | 504 | WP_283146507.1 | hypothetical protein | - |
| QKW62_RS15120 () | 3035405..3035953 | - | 549 | WP_283146370.1 | lysozyme | - |
| QKW62_RS15125 () | 3035925..3036203 | - | 279 | WP_016150433.1 | phage holin | - |
| QKW62_RS15130 () | 3036585..3037190 | - | 606 | WP_283146508.1 | hypothetical protein | - |
| QKW62_RS15135 () | 3037204..3038244 | - | 1041 | WP_283146371.1 | DUF968 domain-containing protein | - |
| QKW62_RS15140 () | 3038241..3038627 | - | 387 | WP_065944709.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QKW62_RS15145 () | 3038603..3038803 | - | 201 | WP_065944708.1 | hypothetical protein | - |
| QKW62_RS15150 () | 3038933..3039178 | - | 246 | WP_283146372.1 | hypothetical protein | - |
| QKW62_RS15155 () | 3039224..3039457 | - | 234 | WP_283146373.1 | DinI family protein | - |
| QKW62_RS15160 () | 3039603..3041678 | - | 2076 | WP_283146374.1 | DNA cytosine methyltransferase | - |
| QKW62_RS15165 () | 3041675..3041932 | - | 258 | WP_283146509.1 | hypothetical protein | - |
| QKW62_RS15170 () | 3041959..3042252 | - | 294 | Protein_2964 | DUF550 domain-containing protein | - |
| QKW62_RS15175 () | 3042852..3043586 | - | 735 | WP_283146375.1 | site-specific DNA-methyltransferase | - |
| QKW62_RS15180 () | 3043588..3043890 | - | 303 | WP_283146376.1 | hypothetical protein | - |
| QKW62_RS15185 () | 3043887..3044225 | - | 339 | WP_016150447.1 | DUF977 family protein | - |
| QKW62_RS15190 () | 3044231..3044647 | - | 417 | WP_283146377.1 | PerC family transcriptional regulator | - |
| QKW62_RS15195 () | 3044667..3045407 | - | 741 | WP_048235132.1 | ATP-binding protein | - |
| QKW62_RS15200 () | 3045410..3046210 | - | 801 | WP_283146378.1 | DUF1376 domain-containing protein | - |
| QKW62_RS15205 () | 3046265..3046819 | - | 555 | WP_071698683.1 | toxin YdaT family protein | - |
| QKW62_RS15210 () | 3046822..3047052 | - | 231 | WP_071698699.1 | YdaS family helix-turn-helix protein | - |
| QKW62_RS15215 () | 3047142..3047579 | + | 438 | WP_079223866.1 | helix-turn-helix domain-containing protein | - |
| QKW62_RS15220 () | 3047787..3048002 | + | 216 | WP_057064237.1 | hypothetical protein | - |
| QKW62_RS15225 () | 3048048..3048386 | + | 339 | WP_283146379.1 | Rrf2 family transcriptional regulator | - |
| QKW62_RS15230 () | 3048528..3051008 | + | 2481 | WP_283146380.1 | 3'-5' exoribonuclease | - |
| QKW62_RS15235 () | 3051072..3051332 | + | 261 | WP_072211989.1 | excisionase | - |
| QKW62_RS15240 () | 3051310..3052389 | + | 1080 | WP_283146381.1 | hypothetical protein ; Integrase | Integrase |
| - | 3052519..3052660 | + | 142 | - | - | Antitoxin Detail |
| - | 3052522..3052625 | - | 104 | - | - | Toxin Detail |
| QKW62_RS15245 () | 3052781..3053119 | - | 339 | WP_003034934.1 | YebY family protein | - |
| QKW62_RS15250 () | 3053140..3054012 | - | 873 | WP_283146382.1 | copper homeostasis membrane protein CopD | - |
| QKW62_RS15255 () | 3054016..3054390 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| QKW62_RS15260 () | 3054534..3054764 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| QKW62_RS15265 () | 3054871..3055527 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| QKW62_RS15270 () | 3055551..3056213 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| QKW62_RS15275 () | 3056204..3058258 | - | 2055 | WP_191218788.1 | oligopeptidase B | - |
| QKW62_RS15280 () | 3058345..3059004 | - | 660 | WP_054528502.1 | tellurite resistance TerB family protein | - |
| QKW62_RS15285 () | 3059099..3059452 | - | 354 | WP_054528503.1 | protein YebF | - |
| QKW62_RS15290 () | 3059574..3059864 | - | 291 | WP_003034906.1 | DNA damage-inducible protein YebG | - |
| QKW62_RS15295 () | 3059996..3061174 | + | 1179 | WP_054528504.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| QKW62_RS15300 () | 3061242..3061883 | - | 642 | WP_003034901.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|