Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3052519..3052660 | Replicon | chromosome |
| Accession | NZ_CP125310 | ||
| Organism | Citrobacter freundii strain CF5125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3052522..3052625 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3052519..3052660 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QKW62_RS15220 | 3047787..3048002 | + | 216 | WP_057064237.1 | hypothetical protein | - |
| QKW62_RS15225 | 3048048..3048386 | + | 339 | WP_283146379.1 | Rrf2 family transcriptional regulator | - |
| QKW62_RS15230 | 3048528..3051008 | + | 2481 | WP_283146380.1 | 3'-5' exoribonuclease | - |
| QKW62_RS15235 | 3051072..3051332 | + | 261 | WP_072211989.1 | excisionase | - |
| QKW62_RS15240 | 3051310..3052389 | + | 1080 | WP_283146381.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3052519..3052660 | + | 142 | - | - | Antitoxin |
| - | 3052522..3052625 | - | 104 | - | - | Toxin |
| QKW62_RS15245 | 3052781..3053119 | - | 339 | WP_003034934.1 | YebY family protein | - |
| QKW62_RS15250 | 3053140..3054012 | - | 873 | WP_283146382.1 | copper homeostasis membrane protein CopD | - |
| QKW62_RS15255 | 3054016..3054390 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| QKW62_RS15260 | 3054534..3054764 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| QKW62_RS15265 | 3054871..3055527 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| QKW62_RS15270 | 3055551..3056213 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2955862..3058282 | 102420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T281980 NZ_CP125310:c3052625-3052522 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT281980 NZ_CP125310:3052519-3052660 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
