MGE detailed information
MGE type: Conjugative plasmid MGE length: 72619 bp
Accession: NZ_CP124377 Location: 1..72619 Organism: Escherichia coli strain AVS0578 Replicon: plasmid pAVS0578-C
Accession: NZ_CP124377 Location: 1..72619 Organism: Escherichia coli strain AVS0578 Replicon: plasmid pAVS0578-C
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJP97_RS26530 (1) | 1..858 | + | 858 | WP_042018306.1 | incFII family plasmid replication initiator RepA | - |
| QJP97_RS26535 (1773) | 1773..2042 | + | 270 | WP_000079928.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| QJP97_RS26540 (2042) | 2042..2320 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| QJP97_RS26545 (2366) | 2366..3214 | + | 849 | WP_016235419.1 | 3'-5' exonuclease | - |
| QJP97_RS26550 (3331) | 3331..3813 | + | 483 | WP_001311056.1 | hypothetical protein | - |
| QJP97_RS26555 (4173) | 4173..5360 | - | 1188 | Protein_5 | IS91 family transposase IS91 | Transposase |
| QJP97_RS26560 (5360) | 5360..5725 | - | 366 | WP_016235422.1 | hypothetical protein | - |
| QJP97_RS26565 (6253) | 6253..6762 | + | 510 | WP_000114984.1 | peptide deformylase | - |
| QJP97_RS26570 (6777) | 6777..6878 | + | 102 | Protein_8 | methionyl-tRNA formyltransferase | - |
| QJP97_RS26575 (7074) | 7074..7265 | + | 192 | WP_000175572.1 | DUF2164 family protein | - |
| QJP97_RS26580 (7262) | 7262..7624 | + | 363 | WP_000181069.1 | hypothetical protein | - |
| QJP97_RS26585 (7957) | 7957..8484 | - | 528 | WP_001196880.1 | DoxX family protein | - |
| QJP97_RS26590 (8486) | 8486..9244 | - | 759 | WP_001181584.1 | DNA-binding domain-containing protein | - |
| QJP97_RS26595 (9213) | 9213..10139 | - | 927 | WP_000989040.1 | DUF692 domain-containing protein | - |
| QJP97_RS26600 (10171) | 10171..10461 | - | 291 | WP_000754127.1 | DUF2282 domain-containing protein | - |
| QJP97_RS26605 (10770) | 10770..11327 | - | 558 | WP_000103553.1 | hypothetical protein | VF |
| QJP97_RS26610 (11975) | 11975..12541 | + | 567 | WP_000587874.1 | hypothetical protein | - |
| QJP97_RS26615 (12609) | 12609..12728 | - | 120 | Protein_17 | transposase domain-containing protein | - |
| QJP97_RS26620 (12930) | 12930..13910 | + | 981 | WP_001218105.1 | plasmid segregation protein ParM | - |
| QJP97_RS26625 (13913) | 13913..14335 | + | 423 | WP_000774834.1 | plasmid partitioning/stability family protein | - |
| QJP97_RS26630 (14359) | 14359..14649 | + | 291 | WP_072262190.1 | hypothetical protein | - |
| QJP97_RS26635 (14744) | 14744..15647 | + | 904 | Protein_21 | DUF1281 domain-containing protein | - |
| QJP97_RS26640 (15644) | 15644..15955 | + | 312 | WP_249538823.1 | hypothetical protein | - |
| QJP97_RS26645 (16031) | 16031..16714 | + | 684 | WP_000086135.1 | DNA methylase | - |
| QJP97_RS26650 (16715) | 16715..16936 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| QJP97_RS26655 (16866) | 16866..17384 | + | 519 | WP_226147437.1 | DUF1380 family protein | - |
| QJP97_RS26660 (17429) | 17429..18199 | + | 771 | WP_016235425.1 | hypothetical protein | - |
| QJP97_RS26665 (18615) | 18615..19040 | + | 426 | WP_001198895.1 | antirestriction protein | - |
| QJP97_RS26670 (19087) | 19087..19506 | + | 420 | WP_042018457.1 | DUF1380 family protein | - |
| QJP97_RS26675 (19506) | 19506..19697 | + | 192 | WP_001027049.1 | hypothetical protein | - |
| QJP97_RS26680 (19676) | 19676..20144 | - | 469 | Protein_30 | hypothetical protein | - |
| QJP97_RS26685 (20661) | 20661..20891 | + | 231 | WP_000218644.1 | hypothetical protein | - |
| QJP97_RS26690 (20943) | 20943..22303 | + | 1361 | Protein_32 | DUF3560 domain-containing protein | - |
| QJP97_RS26695 (22350) | 22350..22912 | + | 563 | Protein_33 | class I SAM-dependent methyltransferase | - |
| QJP97_RS26700 (22998) | 22998..23455 | - | 458 | Protein_34 | hypothetical protein | - |
| QJP97_RS26705 (24409) | 24409..26310 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| QJP97_RS26710 (26459) | 26459..26944 | + | 486 | WP_031311812.1 | single-stranded DNA-binding protein | - |
| QJP97_RS26715 (27002) | 27002..27235 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| QJP97_RS26720 (27296) | 27296..29260 | + | 1965 | WP_001537566.1 | ParB/RepB/Spo0J family partition protein | - |
| QJP97_RS26725 (29329) | 29329..29763 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| QJP97_RS26730 (29760) | 29760..30479 | + | 720 | WP_001276237.1 | plasmid SOS inhibition protein A | - |
| QJP97_RS26735 (30476) | 30476..30790 | + | 315 | WP_001562885.1 | hypothetical protein | - |
| - (30747) | 30747..30932 | + | 186 | NuclAT_0 | - | - |
| - (30747) | 30747..30932 | + | 186 | NuclAT_0 | - | - |
| - (30747) | 30747..30932 | + | 186 | NuclAT_0 | - | - |
| - (30747) | 30747..30932 | + | 186 | NuclAT_0 | - | - |
| - (30747) | 30747..30932 | - | 186 | NuclAT_0 | - | - |
| QJP97_RS26740 (30940) | 30940..31092 | + | 153 | Protein_42 | DUF5431 family protein | - |
| QJP97_RS26745 (31037) | 31037..31159 | + | 123 | WP_223200913.1 | Hok/Gef family protein | - |
| QJP97_RS26750 (31460) | 31460..31756 | - | 297 | Protein_44 | hypothetical protein | - |
| QJP97_RS26755 (32056) | 32056..32352 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| QJP97_RS26760 (32463) | 32463..33284 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| QJP97_RS26765 (33581) | 33581..34228 | - | 648 | WP_072144024.1 | hypothetical protein | VF |
| QJP97_RS26770 (34504) | 34504..34887 | + | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| QJP97_RS26775 (35079) | 35079..35726 | + | 648 | WP_000332523.1 | transcriptional regulator TraJ family protein | - |
| QJP97_RS26780 (35846) | 35846..36073 | + | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| QJP97_RS26785 (36107) | 36107..36469 | + | 363 | WP_001098993.1 | type IV conjugative transfer system pilin TraA | - |
| QJP97_RS26790 (36484) | 36484..36795 | + | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| QJP97_RS26795 (36817) | 36817..37383 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| QJP97_RS26800 (37370) | 37370..38098 | + | 729 | WP_001230771.1 | type-F conjugative transfer system secretin TraK | - |
| QJP97_RS26805 (38098) | 38098..39549 | + | 1452 | WP_016235429.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| QJP97_RS26810 (39539) | 39539..40105 | + | 567 | WP_000896598.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| QJP97_RS26815 (40092) | 40092..40409 | + | 318 | WP_001057297.1 | conjugal transfer protein TrbD | - |
| QJP97_RS26820 (40409) | 40409..40924 | + | 516 | WP_000809872.1 | type IV conjugative transfer system lipoprotein TraV | - |
| QJP97_RS26825 (41059) | 41059..41280 | + | 222 | WP_001278695.1 | conjugal transfer protein TraR | - |
| QJP97_RS26830 (41273) | 41273..41686 | + | 414 | WP_000549581.1 | hypothetical protein | - |
| QJP97_RS26835 (41679) | 41679..42152 | + | 474 | WP_001620797.1 | hypothetical protein | - |
| QJP97_RS26840 (42230) | 42230..42448 | + | 219 | WP_001377841.1 | hypothetical protein | - |
| QJP97_RS26845 (42476) | 42476..42823 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| QJP97_RS26850 (42949) | 42949..45579 | + | 2631 | WP_001535744.1 | type IV secretion system protein TraC | - |
| QJP97_RS26855 (45576) | 45576..45962 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| QJP97_RS26860 (45959) | 45959..46591 | + | 633 | WP_001203738.1 | type-F conjugative transfer system protein TraW | - |
| QJP97_RS26865 (46588) | 46588..47580 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| QJP97_RS26870 (47610) | 47610..47915 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| QJP97_RS26875 (47924) | 47924..48562 | + | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| QJP97_RS26880 (48559) | 48559..50409 | + | 1851 | WP_100535700.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| QJP97_RS26885 (50436) | 50436..50693 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| QJP97_RS26890 (50686) | 50686..51429 | + | 744 | WP_001030385.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| QJP97_RS26895 (51443) | 51443..51784 | + | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| QJP97_RS26900 (51765) | 51765..52100 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| QJP97_RS26905 (52181) | 52181..52465 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| QJP97_RS26910 (52452) | 52452..52997 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| QJP97_RS26915 (52927) | 52927..53274 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| QJP97_RS26920 (53255) | 53255..53647 | + | 393 | WP_000660699.1 | F-type conjugal transfer protein TrbF | - |
| QJP97_RS26925 (53634) | 53634..55007 | + | 1374 | WP_000944331.1 | conjugal transfer pilus assembly protein TraH | - |
| QJP97_RS26930 (55004) | 55004..57850 | + | 2847 | WP_050009856.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| QJP97_RS26935 (57847) | 57847..58356 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| QJP97_RS26940 (58370) | 58370..59101 | + | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| QJP97_RS26945 (59304) | 59304..60041 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| QJP97_RS26950 (60092) | 60092..62281 | + | 2190 | WP_282526082.1 | type IV conjugative transfer system coupling protein TraD | - |
| QJP97_RS26955 (62281) | 62281..67551 | + | 5271 | WP_282526083.1 | Multifunctional conjugation protein TraI | Relaxase |
| QJP97_RS26960 (67571) | 67571..68317 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| QJP97_RS26965 (68376) | 68376..69236 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| QJP97_RS26970 (69339) | 69339..69899 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| QJP97_RS26975 (70028) | 70028..70240 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| QJP97_RS26980 (70485) | 70485..70946 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| QJP97_RS26985 (70992) | 70992..71201 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| QJP97_RS26990 (71239) | 71239..71829 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| QJP97_RS26995 (72069) | 72069..72329 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| QJP97_RS27000 (72423) | 72423..72607 | + | 185 | Protein_94 | plasmid copy control protein CopA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|