MGE detailed information
MGE type: Conjugative plasmid MGE length: 146005 bp
Accession: NZ_CP123661 Location: 1..146005 Organism: Salmonella enterica subsp. enterica serovar Kentucky strain CVM N38232 Replicon: plasmid pN38232-1
Accession: NZ_CP123661 Location: 1..146005 Organism: Salmonella enterica subsp. enterica serovar Kentucky strain CVM N38232 Replicon: plasmid pN38232-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DE22_RS22885 (543) | 543..1496 | + | 954 | Protein_0 | Protease 7 | VF |
| DE22_RS22890 (1929) | 1929..3038 | + | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| DE22_RS22895 (3107) | 3107..4009 | + | 903 | WP_001312822.1 | hypothetical protein | VF |
| DE22_RS22900 (4383) | 4383..4571 | + | 189 | WP_001332052.1 | hypothetical protein | - |
| DE22_RS22905 (4692) | 4692..5432 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| DE22_RS22910 (5717) | 5717..6694 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| DE22_RS22915 (7440) | 7440..7763 | + | 324 | Protein_6 | IS21 family transposase IS21 | Transposase |
| DE22_RS22920 (7765) | 7765..7869 | + | 105 | Protein_7 | AAA family ATPase | - |
| DE22_RS22925 (7930) | 7930..8443 | + | 514 | Protein_8 | DUF4113 domain-containing protein | - |
| DE22_RS22935 (9377) | 9377..9784 | + | 408 | Protein_10 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| DE22_RS22940 (9784) | 9784..10611 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| DE22_RS22945 (10608) | 10608..11465 | + | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| DE22_RS22950 (11462) | 11462..12319 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| DE22_RS22955 (12553) | 12553..12810 | - | 258 | Protein_14 | Tn3 family transposase | - |
| DE22_RS22960 (12808) | 12808..13221 | + | 414 | Protein_15 | phosphopyruvate hydratase | - |
| DE22_RS22965 (13562) | 13562..13942 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| DE22_RS22970 (14322) | 14322..15515 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| DE22_RS22975 (15651) | 15651..17375 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| DE22_RS22980 (17376) | 17376..18323 | + | 948 | WP_000011907.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| DE22_RS22985 (18323) | 18323..20065 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| DE22_RS22990 (20062) | 20062..21395 | + | 1334 | Protein_21 | L-lysine N6-monooxygenase | VF |
| DE22_RS22995 (21421) | 21421..23622 | + | 2202 | WP_000973517.1 | Ferric aerobactin receptor | VF |
| DE22_RS23000 (24147) | 24147..24844 | + | 698 | WP_223230114.1 | IS1 family transposase IS1G | Transposase |
| DE22_RS23005 (25330) | 25330..26832 | + | 1503 | WP_000715081.1 | hypothetical protein | - |
| DE22_RS23010 (27070) | 27070..27767 | + | 698 | WP_223230354.1 | IS1 family transposase IS1S | Transposase |
| DE22_RS23015 (28067) | 28067..29233 | + | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| DE22_RS23020 (29233) | 29233..30204 | + | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| DE22_RS23025 (30841) | 30841..31010 | + | 170 | Protein_28 | hypothetical protein | - |
| DE22_RS23030 (31007) | 31007..31354 | + | 348 | WP_001350917.1 | hypothetical protein | - |
| DE22_RS23035 (31423) | 31423..31998 | + | 576 | WP_000343071.1 | hypothetical protein | - |
| DE22_RS23040 (32011) | 32011..32223 | + | 213 | WP_000092896.1 | hypothetical protein | - |
| DE22_RS23045 (32484) | 32484..33455 | - | 972 | WP_000082155.1 | IS110 family transposase ISEc32 | Transposase |
| DE22_RS23050 (33857) | 33857..34282 | + | 426 | WP_001198922.1 | antirestriction protein | - |
| DE22_RS23055 (34282) | 34282..34743 | + | 462 | WP_042007484.1 | DUF1380 family protein | - |
| DE22_RS23060 (34743) | 34743..34925 | + | 183 | WP_001027505.1 | hypothetical protein | - |
| DE22_RS23065 (35149) | 35149..35402 | - | 254 | Protein_36 | hypothetical protein | - |
| DE22_RS23070 (35919) | 35919..36149 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| DE22_RS23075 (36201) | 36201..37562 | + | 1362 | WP_000170680.1 | DUF3560 domain-containing protein | - |
| DE22_RS23080 (37610) | 37610..38173 | + | 564 | WP_001332335.1 | class I SAM-dependent methyltransferase | - |
| DE22_RS23085 (38259) | 38259..38678 | - | 420 | WP_015056142.1 | hypothetical protein | - |
| DE22_RS23090 (38979) | 38979..39506 | + | 528 | Protein_41 | single-stranded DNA-binding protein | - |
| DE22_RS23095 (39574) | 39574..39807 | + | 234 | WP_000005988.1 | DUF905 family protein | - |
| DE22_RS23100 (39871) | 39871..41829 | + | 1959 | WP_000117202.1 | ParB/RepB/Spo0J family partition protein | - |
| DE22_RS23105 (41884) | 41884..42318 | + | 435 | WP_000845922.1 | conjugation system SOS inhibitor PsiB | - |
| DE22_RS23110 (42315) | 42315..43101 | + | 787 | Protein_45 | plasmid SOS inhibition protein A | - |
| - (43046) | 43046..43257 | + | 212 | NuclAT_0 | - | - |
| - (43046) | 43046..43257 | + | 212 | NuclAT_0 | - | - |
| - (43046) | 43046..43257 | + | 212 | NuclAT_0 | - | - |
| - (43046) | 43046..43257 | + | 212 | NuclAT_0 | - | - |
| - (43046) | 43046..43257 | - | 212 | NuclAT_0 | - | - |
| DE22_RS23115 (43291) | 43291..43404 | + | 114 | Protein_46 | DUF5431 family protein | - |
| DE22_RS23120 (43349) | 43349..43471 | + | 123 | WP_223195199.1 | Hok/Gef family protein | - |
| DE22_RS23125 (43772) | 43772..44069 | - | 298 | Protein_48 | hypothetical protein | - |
| DE22_RS23130 (44370) | 44370..44657 | + | 288 | WP_000107520.1 | hypothetical protein | - |
| DE22_RS23135 (44776) | 44776..45597 | + | 822 | WP_001234468.1 | DUF932 domain-containing protein | - |
| DE22_RS23140 (45893) | 45893..46402 | - | 510 | WP_000759163.1 | hypothetical protein | VF |
| DE22_RS23145 (46817) | 46817..47200 | + | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| DE22_RS23150 (47387) | 47387..48076 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| DE22_RS23155 (48169) | 48169..48570 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| DE22_RS23160 (48603) | 48603..48968 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| DE22_RS23165 (48983) | 48983..49294 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| DE22_RS23170 (49316) | 49316..49882 | + | 567 | WP_000399785.1 | type IV conjugative transfer system protein TraE | - |
| DE22_RS23175 (49869) | 49869..50597 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| DE22_RS23180 (50597) | 50597..52024 | + | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| DE22_RS23185 (52014) | 52014..52604 | + | 591 | WP_000002796.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| DE22_RS23190 (52591) | 52591..52788 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| DE22_RS23195 (52800) | 52800..53051 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| DE22_RS23200 (53048) | 53048..53563 | + | 516 | WP_000809841.1 | type IV conjugative transfer system lipoprotein TraV | - |
| DE22_RS23205 (53698) | 53698..53919 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| DE22_RS23210 (54079) | 54079..56706 | + | 2628 | WP_001064251.1 | type IV secretion system protein TraC | - |
| DE22_RS23215 (56703) | 56703..57089 | + | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| DE22_RS23220 (57086) | 57086..57718 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| DE22_RS23225 (57715) | 57715..58707 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| DE22_RS23230 (58716) | 58716..59354 | + | 639 | WP_022630459.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| DE22_RS23235 (59351) | 59351..61159 | + | 1809 | WP_000821846.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| DE22_RS23240 (61186) | 61186..61443 | + | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| DE22_RS23245 (61436) | 61436..62179 | + | 744 | WP_001030389.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| DE22_RS23250 (62195) | 62195..62542 | + | 348 | WP_001287676.1 | conjugal transfer protein TrbA | - |
| DE22_RS23255 (62661) | 62661..62945 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| DE22_RS23260 (62932) | 62932..63477 | + | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| DE22_RS23265 (63407) | 63407..63769 | + | 363 | WP_071779407.1 | P-type conjugative transfer protein TrbJ | - |
| DE22_RS23270 (63766) | 63766..65142 | + | 1377 | WP_000982833.1 | conjugal transfer pilus assembly protein TraH | - |
| DE22_RS23275 (65139) | 65139..67961 | + | 2823 | WP_001007012.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| DE22_RS23280 (67976) | 67976..68479 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| DE22_RS23285 (68511) | 68511..69242 | + | 732 | WP_001447147.1 | conjugal transfer complement resistance protein TraT | - |
| DE22_RS23290 (69494) | 69494..71701 | + | 2208 | WP_000009364.1 | type IV conjugative transfer system coupling protein TraD | - |
| DE22_RS23295 (71701) | 71701..76971 | + | 5271 | WP_000986988.1 | Multifunctional conjugation protein TraI | Relaxase |
| DE22_RS23300 (76991) | 76991..77737 | + | 747 | WP_000205736.1 | conjugal transfer pilus acetylase TraX | - |
| DE22_RS23305 (77792) | 77792..78352 | + | 561 | WP_000139342.1 | fertility inhibition protein FinO | - |
| DE22_RS23310 (78484) | 78484..78696 | + | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| DE22_RS23315 (78942) | 78942..79403 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| DE22_RS23320 (79449) | 79449..79658 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| DE22_RS23325 (79696) | 79696..80286 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| DE22_RS23330 (80348) | 80348..83110 | - | 2763 | Protein_89 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| DE22_RS23335 (83228) | 83228..84436 | + | 1209 | WP_001352368.1 | IS4 family transposase IS10R | Transposase |
| DE22_RS23340 (84452) | 84452..84571 | - | 120 | Protein_91 | LysR family transcriptional regulator | - |
| DE22_RS23345 (84802) | 84802..86007 | - | 1206 | WP_000599530.1 | sodium/glutamate symporter | - |
| DE22_RS23350 (86451) | 86451..86771 | + | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| DE22_RS23355 (86764) | 86764..87150 | + | 387 | WP_000460651.1 | hypothetical protein | - |
| DE22_RS23360 (87158) | 87158..87844 | + | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| DE22_RS23365 (87822) | 87822..88445 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| DE22_RS23370 (88527) | 88527..89732 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| DE22_RS23375 (89845) | 89845..90438 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| DE22_RS23380 (90526) | 90526..90942 | + | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| DE22_RS23385 (90952) | 90952..92160 | - | 1209 | Protein_100 | IS4 family transposase IS10R | Transposase |
| DE22_RS23390 (92515) | 92515..93129 | + | 615 | WP_000904906.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| DE22_RS23395 (93194) | 93194..94323 | + | 1130 | WP_085959879.1 | IS3 family transposase IS1133 | Transposase |
| DE22_RS23400 (94430) | 94430..95233 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| DE22_RS23405 (95233) | 95233..96069 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| DE22_RS23410 (96391) | 96391..96645 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| DE22_RS23415 (96684) | 96684..96920 | - | 237 | WP_223228793.1 | replication protein RepA | - |
| DE22_RS23420 (96911) | 96911..96958 | + | 48 | WP_077822033.1 | hypothetical protein | - |
| DE22_RS23425 (96951) | 96951..97808 | + | 858 | WP_000130940.1 | incFII family plasmid replication initiator RepA | - |
| DE22_RS23430 (98724) | 98724..98993 | + | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| DE22_RS23435 (98993) | 98993..99271 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| DE22_RS23440 (99317) | 99317..100165 | + | 849 | WP_001057989.1 | 3'-5' exonuclease | - |
| DE22_RS23445 (100351) | 100351..102231 | + | 1881 | WP_001283335.1 | colicin Ia central receptor-binding domain-containing protein | - |
| DE22_RS23450 (102253) | 102253..102588 | - | 336 | WP_001080729.1 | colicin 1A immunity protein | - |
| DE22_RS23455 (102835) | 102835..103239 | + | 405 | WP_000839181.1 | IS66 family transposase ISEc22 | Transposase |
| DE22_RS23460 (103236) | 103236..103583 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| DE22_RS23465 (103632) | 103632..105170 | + | 1539 | WP_000099202.1 | IS66 family transposase ISEc22 | Transposase |
| DE22_RS23470 (105218) | 105218..105394 | + | 177 | Protein_117 | DUF6404 family protein | - |
| DE22_RS23475 (105456) | 105456..106046 | - | 591 | WP_001350923.1 | hypothetical protein | - |
| DE22_RS23480 (106043) | 106043..106303 | - | 261 | WP_000343091.1 | hypothetical protein | - |
| DE22_RS23485 (106596) | 106596..107048 | + | 453 | WP_000670963.1 | acyltransferase | - |
| DE22_RS23490 (107104) | 107104..107370 | - | 267 | WP_001017350.1 | FAD-dependent oxidoreductase | - |
| DE22_RS23495 (107367) | 107367..107636 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| DE22_RS23500 (107638) | 107638..108042 | - | 405 | WP_001389361.1 | hypothetical protein | - |
| DE22_RS23505 (108014) | 108014..108457 | - | 444 | WP_001323891.1 | dehydrogenase | - |
| DE22_RS23510 (108576) | 108576..108812 | + | 237 | WP_001323890.1 | colicin V immunity protein | - |
| DE22_RS23515 (108790) | 108790..109101 | + | 312 | WP_001259758.1 | colicin V | - |
| DE22_RS23520 (109271) | 109271..111367 | - | 2097 | WP_000184924.1 | microcin H47 export transporter peptidase/ATP-binding subunit MchF | - |
| DE22_RS23525 (111360) | 111360..112634 | - | 1275 | WP_000489608.1 | HlyD family secretion protein | - |
| DE22_RS23530 (113245) | 113245..113513 | + | 269 | Protein_129 | type II toxin-antitoxin system antitoxin YacA | - |
| DE22_RS23535 (113513) | 113513..113638 | + | 126 | Protein_130 | type II toxin-antitoxin system toxin YacB | - |
| DE22_RS23540 (113791) | 113791..114099 | + | 309 | WP_000377483.1 | DUF6404 family protein | - |
| DE22_RS23545 (114177) | 114177..114478 | - | 302 | Protein_132 | hypothetical protein | - |
| DE22_RS23550 (114659) | 114659..115693 | + | 1035 | WP_001190234.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| DE22_RS23555 (116548) | 116548..118725 | + | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| DE22_RS23560 (118770) | 118770..119726 | - | 957 | WP_000271277.1 | Ferri-bacillibactin esterase BesA | VF |
| DE22_RS23565 (119811) | 119811..121040 | - | 1230 | WP_000933672.1 | Enterochelin esterase | VF |
| DE22_RS23570 (121144) | 121144..124803 | - | 3660 | WP_001442133.1 | Multidrug efflux ATP-binding/permease protein | VF |
| DE22_RS23575 (124943) | 124943..126058 | - | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| DE22_RS23580 (127369) | 127369..128393 | - | 1025 | Protein_139 | integrase core domain-containing protein | - |
| DE22_RS23585 (128908) | 128908..129015 | + | 108 | Protein_140 | lysis system i-spanin subunit Rz | - |
| DE22_RS23590 (128972) | 128972..129120 | + | 149 | Protein_141 | Rz1 family lipoprotein | - |
| DE22_RS23595 (129204) | 129204..129497 | - | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| DE22_RS23600 (130124) | 130124..131352 | + | 1229 | WP_162858268.1 | IS3 family transposase IS2 | Transposase |
| DE22_RS23605 (132576) | 132576..133769 | + | 1194 | WP_000450494.1 | GTP-binding protein | - |
| DE22_RS23610 (133947) | 133947..134096 | + | 150 | Protein_145 | IS3 family transposase IS2 | Transposase |
| DE22_RS23615 (134406) | 134406..135795 | + | 1390 | Protein_146 | ISNCY family transposase ISKpn21 | Transposase |
| DE22_RS23620 (136030) | 136030..136971 | + | 942 | WP_000974762.1 | hypothetical protein | - |
| DE22_RS23625 (137100) | 137100..137294 | - | 195 | Protein_148 | IS200-IS605 family transposase IS200C | Transposase |
| DE22_RS23630 (137768) | 137768..139138 | - | 1371 | WP_012512746.1 | efflux transporter outer membrane subunit | - |
| DE22_RS23635 (139142) | 139142..141082 | - | 1941 | WP_000733252.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| DE22_RS23640 (141079) | 141079..142266 | - | 1188 | WP_000928804.1 | efflux RND transporter periplasmic adaptor subunit | - |
| DE22_RS23645 (142861) | 142861..143201 | - | 341 | Protein_152 | IS3 family transposase | - |
| DE22_RS23650 (143247) | 143247..143572 | + | 326 | Protein_153 | IS3 family transposase IS911 | Transposase |
| DE22_RS23660 (145072) | 145072..145251 | + | 180 | Protein_155 | integrase core domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|