MGE detailed information
MGE type: Prophage MGE length: 67615 bp
Accession: NZ_CP123365 Location: 1878093..1945707 Organism: Shigella flexneri strain MMGSG_23 Replicon: chromosome
Accession: NZ_CP123365 Location: 1878093..1945707 Organism: Shigella flexneri strain MMGSG_23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFB08_RS09630 () | 1873663..1874478 | + | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
| PFB08_RS09635 () | 1874652..1874868 | - | 217 | Protein_1888 | LysR family transcriptional regulator | - |
| PFB08_RS09640 () | 1874868..1875011 | + | 144 | Protein_1889 | AbgT family transporter | - |
| PFB08_RS09645 () | 1875022..1875537 | + | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| PFB08_RS09650 () | 1875732..1876484 | + | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| PFB08_RS09655 () | 1876636..1877586 | + | 951 | WP_001262123.1 | universal stress protein UspE | - |
| PFB08_RS09660 () | 1877636..1877893 | - | 258 | Protein_1893 | DUF2534 family protein | - |
| PFB08_RS09670 () | 1879389..1880420 | + | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| PFB08_RS09675 () | 1880471..1882084 | - | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| PFB08_RS09680 () | 1882421..1882888 | - | 468 | Protein_1897 | DNA-binding transcriptional regulator PgrR | - |
| PFB08_RS09685 () | 1882952..1883262 | + | 311 | Protein_1898 | IS3 family transposase ISSfl10 | Transposase |
| PFB08_RS09690 () | 1883305..1884500 | - | 1196 | Protein_1899 | IS3 family transposase | - |
| PFB08_RS09695 () | 1884555..1885403 | + | 849 | Protein_1900 | IS3 family transposase ISSd1 | Transposase |
| PFB08_RS09700 () | 1885520..1885801 | + | 282 | WP_005127484.1 | excisionase | - |
| PFB08_RS09705 () | 1885767..1886844 | + | 1078 | Protein_1902 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1886975..1887209 | + | 235 | - | - | Antitoxin Detail |
| - | 1886976..1887079 | - | 104 | - | - | Toxin Detail |
| PFB08_RS09710 () | 1887237..1887578 | - | 342 | WP_000976476.1 | YebY family protein | - |
| PFB08_RS09715 () | 1887591..1888463 | - | 873 | Protein_1904 | copper homeostasis membrane protein CopD | - |
| PFB08_RS09720 () | 1888467..1888841 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PFB08_RS09725 () | 1888980..1889210 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PFB08_RS09730 () | 1889312..1889968 | + | 657 | Protein_1907 | carbon-nitrogen hydrolase family protein YobB | - |
| PFB08_RS09735 () | 1889992..1890654 | + | 663 | WP_000944268.1 | exodeoxyribonuclease X | - |
| PFB08_RS09740 () | 1890651..1892711 | - | 2061 | WP_000936980.1 | oligopeptidase B | - |
| PFB08_RS09745 () | 1892921..1893580 | - | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| PFB08_RS09750 () | 1893907..1894263 | - | 357 | WP_005047608.1 | protein YebF | - |
| PFB08_RS09755 () | 1894330..1894620 | - | 291 | Protein_1912 | DNA damage-inducible protein YebG | - |
| PFB08_RS09760 () | 1894754..1895932 | + | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PFB08_RS09765 () | 1895988..1896629 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PFB08_RS09770 () | 1896666..1898477 | - | 1812 | WP_001069479.1 | phosphogluconate dehydratase | - |
| PFB08_RS09775 () | 1898712..1900187 | - | 1476 | WP_000301736.1 | glucose-6-phosphate dehydrogenase | - |
| PFB08_RS09780 () | 1900525..1901394 | + | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| PFB08_RS09785 () | 1901522..1902964 | + | 1443 | WP_000044417.1 | pyruvate kinase | - |
| PFB08_RS09790 () | 1903095..1904066 | - | 972 | WP_000448385.1 | Lipid A biosynthesis myristoyltransferase 1 | VF |
| PFB08_RS09795 () | 1904186..1905508 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| PFB08_RS09800 () | 1905524..1906456 | - | 933 | WP_024260120.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PFB08_RS09805 () | 1906535..1907290 | + | 756 | WP_000202992.1 | Zinc import ATP-binding protein ZnuC | VF |
| PFB08_RS09810 () | 1907287..1908071 | + | 785 | Protein_1923 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PFB08_RS09815 () | 1908218..1909228 | - | 1011 | WP_000568525.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PFB08_RS09820 () | 1909237..1909848 | - | 612 | WP_000580330.1 | Holliday junction branch migration protein RuvA | - |
| PFB08_RS09825 () | 1909987..1910052 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| PFB08_RS09830 () | 1910121..1910723 | + | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| PFB08_RS09835 () | 1910725..1911246 | - | 522 | WP_000974712.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PFB08_RS09840 () | 1911281..1912022 | - | 742 | Protein_1929 | putative transcriptional regulatory protein YebC | VF |
| PFB08_RS09845 () | 1912051..1912503 | - | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| PFB08_RS09850 () | 1912621..1914393 | - | 1773 | WP_001258670.1 | aspartate--tRNA ligase | - |
| PFB08_RS09855 () | 1914703..1914921 | + | 219 | Protein_1932 | isochorismatase family protein | - |
| PFB08_RS09860 () | 1915149..1916345 | + | 1197 | WP_011069413.1 | IS110 family transposase ISSfl4 | Transposase |
| PFB08_RS09865 () | 1916375..1916719 | + | 345 | Protein_1934 | hydrolase | - |
| PFB08_RS09870 () | 1916716..1916811 | + | 96 | Protein_1935 | hypothetical protein | - |
| PFB08_RS09875 () | 1917074..1917322 | + | 249 | WP_001210039.1 | DinI-like family protein | - |
| PFB08_RS09880 () | 1917922..1919673 | + | 1752 | WP_005031414.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| PFB08_RS09885 () | 1919853..1920476 | - | 624 | WP_000551132.1 | DUF4376 domain-containing protein | - |
| PFB08_RS09890 () | 1920427..1921838 | - | 1412 | Protein_1939 | prophage tail fiber N-terminal domain-containing protein | - |
| PFB08_RS09895 () | 1921902..1922501 | - | 600 | WP_001230481.1 | Outer membrane protein X | VF |
| PFB08_RS09900 () | 1922569..1926048 | - | 3480 | WP_000515521.1 | host specificity protein J | - |
| PFB08_RS09905 () | 1926109..1926684 | - | 576 | WP_005105520.1 | tail assembly protein | - |
| PFB08_RS09910 () | 1926648..1927391 | - | 744 | WP_000194740.1 | C40 family peptidase | - |
| PFB08_RS09915 () | 1927396..1928094 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| PFB08_RS09920 () | 1928094..1928423 | - | 330 | WP_000447264.1 | phage tail protein | - |
| PFB08_RS09925 () | 1928423..1931464 | - | 3042 | WP_000371983.1 | phage tail tape measure protein | - |
| PFB08_RS09930 () | 1931436..1931765 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| PFB08_RS09935 () | 1931774..1932160 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| PFB08_RS09940 () | 1932219..1932959 | - | 741 | WP_000211126.1 | phage tail tube protein | - |
| PFB08_RS09945 () | 1932970..1933371 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| PFB08_RS09950 () | 1933368..1933958 | - | 591 | WP_000677116.1 | phage tail protein | - |
| PFB08_RS09955 () | 1933945..1934316 | - | 372 | WP_000753026.1 | head-tail joining protein | - |
| PFB08_RS09960 () | 1934328..1934729 | - | 402 | WP_001074423.1 | DNA-packaging protein FI | - |
| PFB08_RS09965 () | 1934993..1936189 | + | 1197 | WP_005049126.1 | IS110 family transposase ISSfl4 | Transposase |
| PFB08_RS09990 () | 1937375..1938064 | - | 690 | WP_001064885.1 | hypothetical protein | VF |
| PFB08_RS09995 () | 1938061..1938420 | - | 360 | WP_001215517.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PFB08_RS10000 () | 1938420..1938557 | - | 138 | Protein_1957 | hypothetical protein | - |
| PFB08_RS10005 () | 1938624..1939780 | + | 1157 | WP_094106057.1 | IS3 family transposase ISSd1 | Transposase |
| PFB08_RS10015 () | 1941076..1941903 | + | 828 | WP_000755958.1 | SPFH domain-containing protein | - |
| PFB08_RS10020 () | 1941947..1942696 | + | 750 | WP_001099210.1 | ORF6N domain-containing protein | - |
| PFB08_RS10025 () | 1942693..1943262 | + | 570 | WP_000586688.1 | hypothetical protein | - |
| PFB08_RS10030 () | 1943386..1943628 | + | 243 | WP_000457719.1 | DUF4222 domain-containing protein | - |
| PFB08_RS10035 () | 1943632..1943778 | + | 147 | WP_001030133.1 | hypothetical protein | - |
| PFB08_RS10040 () | 1943787..1943951 | + | 165 | Protein_1965 | excisionase family protein | - |
| PFB08_RS10050 () | 1945360..1945707 | + | 348 | Protein_1967 | DUF72 domain-containing protein | - |
| PFB08_RS10055 () | 1945760..1946155 | + | 396 | WP_005048647.1 | MAPEG family protein | - |
| PFB08_RS10060 () | 1946196..1946939 | + | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| PFB08_RS10065 () | 1946936..1947907 | + | 972 | WP_000564754.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| PFB08_RS10070 () | 1948072..1950501 | - | 2430 | WP_001229400.1 | trimethylamine N-oxide reductase TorZ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|