MGE detailed information
MGE type: Prophage MGE length: 19122 bp
Accession: NZ_CP123365 Location: 1565668..1584789 Organism: Shigella flexneri strain MMGSG_23 Replicon: chromosome
Accession: NZ_CP123365 Location: 1565668..1584789 Organism: Shigella flexneri strain MMGSG_23 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFB08_RS08015 (1562330) | 1562330..1563976 | - | 1647 | WP_005050037.1 | medium-chain fatty-acid--CoA ligase | - |
| PFB08_RS08020 (1564033) | 1564033..1564326 | - | 294 | WP_000081083.1 | ferredoxin family protein | - |
| PFB08_RS08025 (1564323) | 1564323..1565612 | - | 1290 | WP_001278524.1 | FAD-dependent oxidoreductase | - |
| PFB08_RS08030 (1565668) | 1565668..1566606 | - | 939 | WP_000080702.1 | electron transfer flavoprotein subunit alpha | - |
| PFB08_RS08035 (1566626) | 1566626..1567390 | - | 765 | WP_000692128.1 | electron transfer flavoprotein | - |
| PFB08_RS08040 (1567712) | 1567712..1568191 | + | 480 | Protein_1573 | cupin domain-containing protein | - |
| PFB08_RS08045 (1568246) | 1568246..1568943 | + | 698 | WP_227804276.1 | IS1 family transposase IS1X2 | Transposase |
| PFB08_RS08050 (1568937) | 1568937..1569104 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| PFB08_RS08055 (1569506) | 1569506..1570267 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| PFB08_RS08060 (1570335) | 1570335..1570538 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| PFB08_RS08065 (1570786) | 1570786..1573065 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| PFB08_RS08070 (1573399) | 1573399..1574148 | - | 750 | Protein_1579 | Type 1 fimbrin D-mannose specific adhesin | VF |
| PFB08_RS08075 (1574204) | 1574204..1574901 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| PFB08_RS08080 (1574919) | 1574919..1575797 | + | 879 | Protein_1581 | IS3 family transposase IS600 | Transposase |
| PFB08_RS08085 (1575822) | 1575822..1576001 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| PFB08_RS08090 (1576151) | 1576151..1576312 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| PFB08_RS08095 (1576312) | 1576312..1576497 | - | 186 | Protein_1584 | DUF1737 domain-containing protein | - |
| PFB08_RS08100 (1576757) | 1576757..1577092 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| PFB08_RS08105 (1577373) | 1577373..1577481 | - | 109 | Protein_1586 | DUF3927 family protein | - |
| PFB08_RS08120 (1578402) | 1578402..1579223 | - | 822 | WP_000762882.1 | antitermination protein | - |
| PFB08_RS08125 (1579238) | 1579238..1579594 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PFB08_RS08130 (1579607) | 1579607..1580656 | - | 1050 | WP_001265250.1 | DUF968 domain-containing protein | - |
| PFB08_RS08135 (1580658) | 1580658..1580936 | - | 279 | Protein_1590 | hypothetical protein | - |
| PFB08_RS08140 (1581003) | 1581003..1581254 | - | 252 | WP_000980987.1 | protein Rem | - |
| PFB08_RS08145 (1581472) | 1581472..1581627 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| PFB08_RS08150 (1581699) | 1581699..1581986 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| PFB08_RS08155 (1581986) | 1581986..1582225 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| PFB08_RS08160 (1582250) | 1582250..1582555 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| PFB08_RS08170 (1583770) | 1583770..1584789 | + | 1020 | Protein_1597 | MHS family MFS transporter YdfJ | - |
| PFB08_RS08175 (1584878) | 1584878..1586338 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| PFB08_RS08180 (1586374) | 1586374..1586577 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| PFB08_RS08185 (1586755) | 1586755..1587393 | - | 639 | WP_011069375.1 | DNA-binding transcriptional regulator rspR | - |
| PFB08_RS08190 (1587530) | 1587530..1588276 | - | 747 | WP_011069376.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|