MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 142926 bp
Accession: NZ_CP123268 Location: 1..142926 Organism: Escherichia coli strain YZLc23-1 Replicon: plasmid pYZLc23-1_142k
Accession: NZ_CP123268 Location: 1..142926 Organism: Escherichia coli strain YZLc23-1 Replicon: plasmid pYZLc23-1_142k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4686_RS24565 (N4686_024565) | 1..861 | + | 861 | WP_001076427.1 | replication protein RepA | - |
| N4686_RS24570 (N4686_024570) | 1260..2465 | + | 1206 | WP_000817632.1 | Plasmid partition protein A | VF |
| N4686_RS24575 (N4686_024575) | 2462..3427 | + | 966 | WP_000725192.1 | ParB family protein | - |
| N4686_RS24580 (N4686_024580) | 3694..5400 | + | 1707 | WP_000067710.1 | hypothetical protein | - |
| N4686_RS24585 (N4686_024585) | 5460..7049 | + | 1590 | WP_118940266.1 | hypothetical protein | - |
| N4686_RS24590 (N4686_024590) | 7059..7871 | + | 813 | WP_000041767.1 | hypothetical protein | - |
| N4686_RS24595 (N4686_024595) | 8030..8488 | + | 459 | WP_223689991.1 | hypothetical protein | - |
| N4686_RS24600 (N4686_024600) | 8500..9009 | + | 510 | WP_000509939.1 | hypothetical protein | - |
| N4686_RS24605 (N4686_024605) | 9307..10299 | + | 993 | WP_000944483.1 | MazG-like family protein | - |
| N4686_RS24610 (N4686_024610) | 10654..10809 | - | 156 | WP_001313475.1 | type I toxin-antitoxin system toxin HokD | - |
| N4686_RS24615 (N4686_024615) | 10991..11236 | - | 246 | WP_118940273.1 | hypothetical protein | - |
| N4686_RS24620 (N4686_024620) | 11287..12132 | - | 846 | WP_118940267.1 | Replication protein repL | - |
| N4686_RS24625 (N4686_024625) | 12162..12728 | - | 567 | Protein_12 | phage antirepressor KilAC domain-containing protein | - |
| N4686_RS24630 (N4686_024630) | 12792..13496 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| N4686_RS24635 (N4686_024635) | 13618..14523 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| N4686_RS24640 (N4686_024640) | 14520..15758 | + | 1239 | WP_118940248.1 | macrolide resistance MFS transporter Mrx(A) | - |
| N4686_RS24645 (N4686_024645) | 15758..16342 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| N4686_RS24650 (N4686_024650) | 16835..17599 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| N4686_RS24655 (N4686_024655) | 17717..17782 | - | 66 | Protein_18 | EAL domain-containing protein | - |
| N4686_RS24660 (N4686_024660) | 17826..18131 | - | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| N4686_RS24665 (N4686_024665) | 18142..19347 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| N4686_RS24670 (N4686_024670) | 19503..19706 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| N4686_RS24675 (N4686_024675) | 19834..20673 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| N4686_RS24680 (N4686_024680) | 20667..21014 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| N4686_RS24685 (N4686_024685) | 21220..22008 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| N4686_RS24690 (N4686_024690) | 22139..22612 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| N4686_RS24695 (N4686_024695) | 22770..23783 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| N4686_RS24700 (N4686_024700) | 23986..24336 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| N4686_RS24705 (N4686_024705) | 24413..25057 | + | 645 | Protein_28 | STAS domain-containing protein | - |
| N4686_RS24710 (N4686_024710) | 25092..25193 | + | 102 | Protein_29 | universal stress protein | - |
| N4686_RS24715 (N4686_024715) | 25249..25934 | + | 686 | WP_283159130.1 | IS1 family transposase IS1R | Transposase |
| N4686_RS24720 (N4686_024720) | 25936..27456 | + | 1521 | WP_118940363.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| N4686_RS24725 (N4686_024725) | 27625..28034 | + | 410 | Protein_32 | resolvase | - |
| N4686_RS24730 (N4686_024730) | 28141..28524 | - | 384 | WP_198290423.1 | ester cyclase | - |
| N4686_RS24735 (N4686_024735) | 28551..29540 | - | 990 | WP_000104482.1 | HTH-type transcriptional regulator CdhR | VF |
| N4686_RS24740 (N4686_024740) | 29556..30332 | - | 777 | WP_118940364.1 | MBL fold metallo-hydrolase | - |
| N4686_RS24745 (N4686_024745) | 30605..30937 | + | 333 | Protein_36 | Ref family protein | - |
| N4686_RS24750 (N4686_024750) | 31126..31767 | + | 642 | WP_016246529.1 | hypothetical protein | - |
| N4686_RS24755 (N4686_024755) | 31865..32905 | - | 1041 | WP_233336894.1 | DUF2971 domain-containing protein | - |
| N4686_RS24760 (N4686_024760) | 32958..33206 | - | 249 | WP_000747846.1 | hypothetical protein | - |
| N4686_RS24765 (N4686_024765) | 33203..33643 | - | 441 | WP_000224043.1 | hypothetical protein | - |
| N4686_RS24770 (N4686_024770) | 33677..35380 | - | 1704 | Protein_41 | helicase | - |
| N4686_RS24775 (N4686_024775) | 35434..36138 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| N4686_RS24780 (N4686_024780) | 36172..36432 | - | 261 | WP_262930783.1 | KilA-N domain-containing protein | - |
| N4686_RS24785 (N4686_024785) | 36597..37640 | - | 1044 | WP_058664406.1 | phage antirepressor KilAC domain-containing protein | - |
| N4686_RS24790 (N4686_024790) | 37637..37858 | - | 222 | WP_000245709.1 | host cell division inhibitor Icd-like protein | - |
| N4686_RS24795 (N4686_024795) | 38436..39416 | + | 981 | WP_000019441.1 | IS5 family transposase ISKpn26 | Transposase |
| N4686_RS24800 (N4686_024800) | 39680..40192 | + | 513 | WP_000039791.1 | hypothetical protein | - |
| N4686_RS24805 (N4686_024805) | 40196..40735 | + | 540 | WP_001033469.1 | DUF5384 family protein | - |
| N4686_RS24810 (N4686_024810) | 40816..41382 | + | 567 | WP_000188923.1 | hypothetical protein | - |
| N4686_RS24815 (N4686_024815) | 41393..42004 | + | 612 | WP_001697755.1 | hypothetical protein | - |
| N4686_RS24820 (N4686_024820) | 42019..42900 | + | 882 | WP_000926355.1 | hypothetical protein | - |
| N4686_RS24825 (N4686_024825) | 42982..46404 | + | 3423 | WP_118940365.1 | transglycosylase SLT domain-containing protein | - |
| N4686_RS24830 (N4686_024830) | 46404..46760 | + | 357 | WP_000002800.1 | hypothetical protein | - |
| N4686_RS24835 (N4686_024835) | 46757..48190 | + | 1434 | WP_000047920.1 | bleomycin hydrolase | - |
| N4686_RS24840 (N4686_024840) | 48190..49026 | + | 837 | WP_118940269.1 | phage tail protein | - |
| N4686_RS24845 (N4686_024845) | 49105..49539 | + | 435 | WP_001286328.1 | hypothetical protein | - |
| N4686_RS24850 (N4686_024850) | 49551..53435 | + | 3885 | WP_283159131.1 | tail fiber protein | - |
| N4686_RS24855 (N4686_024855) | 53447..53959 | + | 513 | WP_023356301.1 | tail fiber assembly protein | - |
| N4686_RS24860 (N4686_024860) | 53994..54539 | - | 546 | WP_023356302.1 | tail assembly chaperone | - |
| N4686_RS24865 (N4686_024865) | 56058..56255 | - | 198 | Protein_60 | phage tail protein | - |
| N4686_RS24870 (N4686_024870) | 56645..57205 | - | 561 | WP_000905118.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| N4686_RS24875 (N4686_024875) | 57351..57614 | + | 264 | WP_236918836.1 | phage holin family protein | - |
| N4686_RS24880 (N4686_024880) | 57682..58011 | + | 330 | WP_000887652.1 | phage holin family protein | - |
| N4686_RS24885 (N4686_024885) | 58008..58451 | + | 444 | WP_000580776.1 | hypothetical protein | - |
| N4686_RS24890 (N4686_024890) | 58438..59040 | + | 603 | WP_000164724.1 | hypothetical protein | - |
| N4686_RS24895 (N4686_024895) | 59042..60961 | + | 1920 | WP_001682275.1 | hypothetical protein | - |
| N4686_RS24900 (N4686_024900) | 60958..61323 | + | 366 | WP_015974237.1 | hypothetical protein | - |
| N4686_RS24905 (N4686_024905) | 61336..64323 | + | 2988 | WP_118940252.1 | hypothetical protein | - |
| N4686_RS24910 (N4686_024910) | 64313..64621 | + | 309 | WP_015974235.1 | hypothetical protein | - |
| N4686_RS24915 (N4686_024915) | 64733..65338 | - | 606 | WP_015974234.1 | hypothetical protein | - |
| N4686_RS24920 (N4686_024920) | 65557..66351 | - | 795 | WP_066019276.1 | hypothetical protein | - |
| N4686_RS24925 (N4686_024925) | 66549..67037 | - | 489 | WP_000068865.1 | single-stranded DNA-binding protein | - |
| N4686_RS24930 (N4686_024930) | 67206..67763 | + | 558 | WP_024175649.1 | lysozyme | - |
| N4686_RS24935 (N4686_024935) | 68055..69074 | - | 1020 | WP_000132941.1 | head processing protein | - |
| N4686_RS24940 (N4686_024940) | 69067..70776 | - | 1710 | WP_073028519.1 | phage portal protein | - |
| N4686_RS24945 (N4686_024945) | 70852..75933 | + | 5082 | Protein_76 | N-6 DNA methylase | - |
| N4686_RS24950 (N4686_024950) | 75986..76690 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| N4686_RS24955 (N4686_024955) | 76755..77069 | + | 315 | Protein_78 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| N4686_RS24960 (N4686_024960) | 77072..80023 | + | 2952 | WP_015344976.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| N4686_RS24965 (N4686_024965) | 79957..80433 | + | 477 | WP_223171565.1 | hypothetical protein | - |
| N4686_RS24970 (N4686_024970) | 80518..81222 | - | 705 | WP_001067784.1 | IS6 family transposase IS1006 | Transposase |
| N4686_RS24975 (N4686_024975) | 81286..82116 | + | 831 | Protein_82 | IS91 family transposase ISVsa3 | Transposase |
| N4686_RS24980 (N4686_024980) | 82147..83031 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| N4686_RS24985 (N4686_024985) | 83248..84462 | + | 1215 | WP_000214122.1 | Bicyclomycin resistance protein | ARG |
| N4686_RS24990 (N4686_024990) | 84490..84795 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| N4686_RS24995 (N4686_024995) | 84907..86400 | + | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| N4686_RS25000 (N4686_025000) | 86636..86878 | - | 243 | Protein_87 | phosphoglucosamine mutase | - |
| N4686_RS25005 (N4686_025005) | 86965..87780 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| N4686_RS25010 (N4686_025010) | 87870..88960 | + | 1091 | WP_085940648.1 | IS4 family transposase ISAba1 | Transposase |
| N4686_RS25015 (N4686_025015) | 89157..89642 | - | 486 | WP_006581703.1 | hypothetical protein | - |
| N4686_RS25020 (N4686_025020) | 89868..91391 | - | 1524 | Protein_91 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| N4686_RS25025 (N4686_025025) | 91453..92205 | + | 753 | WP_000602738.1 | IS6 family transposase ISRle7 | Transposase |
| N4686_RS25030 (N4686_025030) | 92265..92552 | - | 288 | Protein_93 | AAC(3) family N-acetyltransferase | - |
| N4686_RS25035 (N4686_025035) | 92627..93652 | - | 1026 | WP_000742814.1 | hypothetical protein | ARG |
| N4686_RS25040 (N4686_025040) | 93881..94657 | - | 777 | WP_001199192.1 | hypothetical protein | ARG |
| N4686_RS25045 (N4686_025045) | 94771..95475 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N4686_RS25050 (N4686_025050) | 95523..95651 | + | 129 | WP_162720370.1 | hypothetical protein | - |
| N4686_RS25055 (N4686_025055) | 95715..95906 | + | 192 | Protein_98 | IS1380 family transposase | - |
| N4686_RS25060 (N4686_025060) | 96156..97031 | + | 876 | WP_013188475.1 | hypothetical protein | ARG |
| N4686_RS25065 (N4686_025065) | 97066..98034 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| N4686_RS25070 (N4686_025070) | 98091..99188 | + | 1098 | Protein_101 | TonB-dependent receptor | - |
| N4686_RS25075 (N4686_025075) | 99256..99792 | - | 537 | Protein_102 | PAS domain-containing protein | - |
| N4686_RS25080 (N4686_025080) | 99869..100573 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N4686_RS25085 (N4686_025085) | 100639..102153 | + | 1515 | Protein_104 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| N4686_RS25090 (N4686_025090) | 102211..102453 | + | 243 | WP_000844627.1 | transposase | - |
| N4686_RS25095 (N4686_025095) | 102485..103135 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| N4686_RS25100 (N4686_025100) | 103241..104440 | + | 1200 | WP_001493765.1 | Multidrug resistance protein MdtG | ARG |
| N4686_RS25105 (N4686_025105) | 104472..105356 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| N4686_RS25110 (N4686_025110) | 105494..105886 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| N4686_RS25115 (N4686_025115) | 105890..107641 | + | 1752 | Protein_110 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| N4686_RS25120 (N4686_025120) | 107674..107930 | - | 257 | Protein_111 | recombinase family protein | - |
| N4686_RS25125 (N4686_025125) | 108279..108590 | - | 312 | WP_016246567.1 | hypothetical protein | - |
| N4686_RS25130 (N4686_025130) | 108641..109672 | - | 1032 | WP_000067534.1 | site-specific integrase | - |
| N4686_RS25135 (N4686_025135) | 109680..109901 | - | 222 | WP_000542385.1 | hypothetical protein | - |
| N4686_RS25140 (N4686_025140) | 110506..110715 | + | 210 | WP_000874154.1 | hypothetical protein | - |
| N4686_RS25145 (N4686_025145) | 110826..111677 | + | 852 | WP_000611656.1 | phage repressor protein C1 | - |
| N4686_RS25150 (N4686_025150) | 111702..113144 | - | 1443 | WP_233336883.1 | terminase | - |
| N4686_RS25155 (N4686_025155) | 113186..114379 | - | 1194 | WP_032214401.1 | hypothetical protein | - |
| N4686_RS25160 (N4686_025160) | 114465..114917 | - | 453 | WP_001326849.1 | late promoter-activating protein | - |
| N4686_RS25165 (N4686_025165) | 115006..116049 | - | 1044 | WP_094318254.1 | DUF968 domain-containing protein | - |
| N4686_RS25170 (N4686_025170) | 116077..116256 | - | 180 | WP_000113018.1 | hypothetical protein | - |
| N4686_RS25175 (N4686_025175) | 116261..116641 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| N4686_RS25180 (N4686_025180) | 116641..116862 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N4686_RS25185 (N4686_025185) | 116935..117324 | - | 390 | WP_000506724.1 | S24 family peptidase | - |
| N4686_RS25190 (N4686_025190) | 117676..118083 | + | 408 | WP_223656859.1 | hypothetical protein | - |
| N4686_RS25195 (N4686_025195) | 118084..118440 | + | 357 | WP_001062545.1 | hypothetical protein | - |
| N4686_RS25200 (N4686_025200) | 119516..119746 | - | 231 | WP_223656858.1 | hypothetical protein | - |
| N4686_RS25205 (N4686_025205) | 119874..121052 | - | 1179 | WP_233336884.1 | hypothetical protein | - |
| N4686_RS25210 (N4686_025210) | 121247..121753 | - | 507 | WP_000021754.1 | hypothetical protein | - |
| N4686_RS25215 (N4686_025215) | 121826..123088 | - | 1263 | WP_000107689.1 | hypothetical protein | - |
| N4686_RS25220 (N4686_025220) | 123390..124091 | - | 702 | WP_000684845.1 | hypothetical protein | - |
| N4686_RS25225 (N4686_025225) | 124088..124765 | - | 678 | WP_001354545.1 | metallophosphoesterase | - |
| N4686_RS25230 (N4686_025230) | 124762..125388 | - | 627 | WP_000484110.1 | hypothetical protein | - |
| N4686_RS25235 (N4686_025235) | 125890..126045 | - | 156 | WP_118940272.1 | hypothetical protein | - |
| N4686_RS25240 (N4686_025240) | 126113..126691 | - | 579 | WP_118940258.1 | VRR-NUC domain-containing protein | - |
| N4686_RS25245 (N4686_025245) | 126694..126939 | - | 246 | WP_000840931.1 | hypothetical protein | - |
| N4686_RS25250 (N4686_025250) | 127086..127463 | + | 378 | WP_000235786.1 | hypothetical protein | - |
| N4686_RS25255 (N4686_025255) | 127473..128690 | + | 1218 | WP_118940259.1 | phage tail protein | - |
| N4686_RS25260 (N4686_025260) | 128694..129422 | + | 729 | WP_000896801.1 | hypothetical protein | - |
| N4686_RS25265 (N4686_025265) | 129409..130194 | + | 786 | WP_118940260.1 | baseplate | - |
| N4686_RS25270 (N4686_025270) | 130196..131212 | + | 1017 | WP_032219036.1 | hypothetical protein | - |
| N4686_RS25275 (N4686_025275) | 131205..131837 | + | 633 | WP_118940261.1 | baseplate protein | - |
| N4686_RS25280 (N4686_025280) | 131883..132881 | - | 999 | WP_118940262.1 | hypothetical protein | - |
| N4686_RS25285 (N4686_025285) | 132881..134245 | - | 1365 | WP_118940263.1 | replicative DNA helicase | - |
| N4686_RS25295 (N4686_025295) | 134712..134876 | - | 165 | WP_000146941.1 | DUF3927 family protein | - |
| N4686_RS25300 (N4686_025300) | 134876..135310 | - | 435 | WP_000467133.1 | TerB family tellurite resistance protein | - |
| N4686_RS25305 (N4686_025305) | 135826..136038 | - | 213 | WP_118940380.1 | hypothetical protein | - |
| N4686_RS25320 (N4686_025320) | 136882..139146 | - | 2265 | WP_118940264.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| N4686_RS25325 (N4686_025325) | 139143..140048 | - | 906 | WP_039022913.1 | recombination-associated protein RdgC | - |
| N4686_RS25330 (N4686_025330) | 140041..140325 | - | 285 | WP_001177860.1 | hypothetical protein | - |
| N4686_RS25335 (N4686_025335) | 140788..141576 | + | 789 | WP_118940265.1 | hypothetical protein | - |
| N4686_RS25340 (N4686_025340) | 141616..142038 | + | 423 | WP_000007769.1 | hypothetical protein | - |
| N4686_RS25345 (N4686_025345) | 142216..142608 | + | 393 | WP_001281114.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|