MGE detailed information
MGE type: Genomic_island MGE length: 28133 bp
Accession: NZ_CP123266 Location: 4196605..4224737 Organism: Escherichia coli strain YZLc23-1 Replicon: chromosome
Accession: NZ_CP123266 Location: 4196605..4224737 Organism: Escherichia coli strain YZLc23-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4686_RS20300 (4193137) | 4193137..4193862 | - | 726 | WP_000066557.1 | type 1 fimbria chaperone FimC | - |
| N4686_RS20305 (4193899) | 4193899..4194438 | - | 540 | WP_000824114.1 | fimbrial protein | - |
| N4686_RS20310 (4194503) | 4194503..4195051 | - | 549 | WP_000695543.1 | type 1 fimbrial major subunit FimA | - |
| N4686_RS20315 (4195531) | 4195531..4196127 | - | 597 | WP_000044711.1 | type 1 fimbria switch DNA invertase FimE | - |
| N4686_RS20320 (4196605) | 4196605..4197207 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| N4686_RS20325 (4198663) | 4198663..4199379 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| N4686_RS20330 (4199398) | 4199398..4200504 | + | 1107 | WP_001044128.1 | N-acetylneuraminate epimerase | - |
| N4686_RS20335 (4200569) | 4200569..4201549 | + | 981 | WP_001366032.1 | sialate O-acetylesterase | - |
| N4686_RS20340 (4201557) | 4201557..4201661 | - | 105 | Protein_3980 | HNH endonuclease | - |
| N4686_RS20345 (4201761) | 4201761..4202633 | + | 873 | WP_000168567.1 | HNH endonuclease | - |
| N4686_RS20350 (4202744) | 4202744..4203742 | - | 999 | WP_001240355.1 | membrane protein | - |
| N4686_RS20355 (4204284) | 4204284..4204427 | - | 144 | Protein_3983 | hypothetical protein | - |
| N4686_RS20360 (4204512) | 4204512..4204709 | - | 198 | WP_001327226.1 | DUF957 domain-containing protein | - |
| N4686_RS20365 (4204729) | 4204729..4205217 | - | 489 | WP_000761685.1 | DUF5983 family protein | - |
| N4686_RS20370 (4205214) | 4205214..4205591 | - | 378 | WP_072649755.1 | TA system toxin CbtA family protein | Toxin Detail |
| N4686_RS20375 (4205681) | 4205681..4206049 | - | 369 | WP_001285607.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| N4686_RS20380 (4206129) | 4206129..4206350 | - | 222 | WP_000692350.1 | DUF987 domain-containing protein | - |
| N4686_RS20385 (4206437) | 4206437..4206913 | - | 477 | WP_001384029.1 | RadC family protein | - |
| N4686_RS20390 (4206928) | 4206928..4207413 | - | 486 | WP_000213722.1 | antirestriction protein | - |
| N4686_RS20395 (4207505) | 4207505..4208323 | - | 819 | WP_001175175.1 | DUF932 domain-containing protein | - |
| N4686_RS20400 (4208413) | 4208413..4208622 | - | 210 | WP_032150870.1 | DUF905 family protein | - |
| N4686_RS20405 (4208652) | 4208652..4209329 | - | 678 | WP_001097301.1 | hypothetical protein | - |
| N4686_RS20410 (4209477) | 4209477..4210157 | - | 681 | WP_001282919.1 | WYL domain-containing protein | - |
| N4686_RS20415 (4210360) | 4210360..4211244 | - | 885 | WP_000010408.1 | 50S ribosome-binding GTPase | - |
| N4686_RS20420 (4211429) | 4211429..4212559 | + | 1131 | WP_047928958.1 | hypothetical protein | - |
| N4686_RS20425 (4214040) | 4214040..4214771 | + | 732 | WP_001075464.1 | inovirus Gp2 family protein | - |
| N4686_RS20430 (4215099) | 4215099..4215977 | + | 879 | WP_000769116.1 | restriction endonuclease | - |
| N4686_RS20435 (4216031) | 4216031..4216605 | + | 575 | Protein_3999 | transposase | - |
| N4686_RS20440 (4216738) | 4216738..4217513 | - | 776 | Protein_4000 | transposase | - |
| N4686_RS20445 (4217824) | 4217824..4218174 | + | 351 | WP_001342701.1 | H-NS family nucleoid-associated regulatory protein | - |
| N4686_RS20450 (4218443) | 4218443..4218571 | + | 129 | Protein_4002 | IS256 family transposase | - |
| N4686_RS20455 (4218601) | 4218601..4218950 | - | 350 | Protein_4003 | IS21 family transposase | - |
| N4686_RS20460 (4219983) | 4219983..4220549 | + | 567 | WP_001696532.1 | inovirus-type Gp2 protein | - |
| N4686_RS20465 (4220796) | 4220796..4221368 | + | 573 | WP_123004690.1 | hypothetical protein | - |
| N4686_RS20470 (4221437) | 4221437..4221670 | + | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| N4686_RS20475 (4221953) | 4221953..4222501 | + | 549 | WP_001167422.1 | hypothetical protein | - |
| N4686_RS20480 (4222520) | 4222520..4222768 | - | 249 | WP_001470076.1 | ProQ/FINO family protein | - |
| N4686_RS20485 (4222891) | 4222891..4223968 | - | 1078 | Protein_4009 | IS3 family transposase IS2 | Transposase |
| N4686_RS20490 (4224746) | 4224746..4224901 | - | 156 | WP_232380132.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| N4686_RS20495 (4225102) | 4225102..4226418 | + | 1317 | WP_000803221.1 | sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB | - |
| N4686_RS20500 (4226557) | 4226557..4227554 | + | 998 | Protein_4012 | IS110 family transposase | - |
| N4686_RS20505 (4227913) | 4227913..4229256 | + | 1344 | WP_029397907.1 | esterase-like activity of phytase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|