MGE detailed information
MGE type: Conjugative plasmid MGE length: 94872 bp
Accession: NZ_CP123263 Location: 1..94872 Organism: Escherichia coli strain YZLc4-1 Replicon: plasmid pYZLc4-1_94k
Accession: NZ_CP123263 Location: 1..94872 Organism: Escherichia coli strain YZLc4-1 Replicon: plasmid pYZLc4-1_94k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4697_RS25090 (N4697_025095) | 46..1077 | + | 1032 | WP_000907860.1 | plasmid replication initiator RepA | - |
| N4697_RS25095 (N4697_025100) | 1917..2102 | + | 186 | Protein_1 | hypothetical protein | - |
| N4697_RS25100 (N4697_025105) | 2050..2318 | + | 269 | Protein_2 | type II toxin-antitoxin system toxin YacB | - |
| N4697_RS25105 (N4697_025110) | 2389..2823 | + | 435 | WP_010378354.1 | hypothetical protein | - |
| N4697_RS25110 (N4697_025115) | 2836..3675 | + | 840 | WP_000964936.1 | toll/interleukin-1 receptor domain-containing protein | - |
| N4697_RS25120 (N4697_025125) | 5036..5992 | + | 957 | WP_262935005.1 | Abi family protein | - |
| N4697_RS25125 (N4697_025130) | 6102..6872 | - | 771 | WP_000418053.1 | hypothetical protein | - |
| N4697_RS25130 (N4697_025135) | 7077..7349 | + | 273 | WP_001031147.1 | hypothetical protein | - |
| N4697_RS25135 (N4697_025140) | 7646..8596 | - | 951 | WP_262935006.1 | S-4TM family putative pore-forming effector | - |
| N4697_RS25140 (N4697_025145) | 8600..9595 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| N4697_RS25145 (N4697_025150) | 10024..11595 | + | 1572 | WP_047613524.1 | ATP-binding protein | - |
| N4697_RS25150 (N4697_025155) | 11802..12782 | - | 981 | WP_089576189.1 | hypothetical protein | - |
| N4697_RS25155 (N4697_025160) | 12922..13338 | - | 417 | WP_047612429.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| N4697_RS25160 (N4697_025165) | 13335..13565 | - | 231 | WP_001604445.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| N4697_RS25165 (N4697_025170) | 13522..13712 | + | 191 | Protein_15 | hypothetical protein | - |
| N4697_RS25170 (N4697_025175) | 13918..14919 | + | 1002 | WP_000785695.1 | DUF4238 domain-containing protein | - |
| N4697_RS25175 (N4697_025180) | 15093..15437 | - | 345 | WP_000792769.1 | hypothetical protein | - |
| N4697_RS25180 (N4697_025185) | 15935..16189 | - | 255 | WP_000678528.1 | hypothetical protein | - |
| N4697_RS25185 (N4697_025190) | 16239..17165 | - | 927 | WP_001290414.1 | hypothetical protein | - |
| N4697_RS25190 (N4697_025195) | 17698..18012 | + | 315 | WP_001302628.1 | hypothetical protein | - |
| N4697_RS25195 (N4697_025200) | 18074..18760 | + | 687 | WP_262935007.1 | hypothetical protein | - |
| N4697_RS25205 (N4697_025210) | 20150..20935 | + | 786 | WP_077814904.1 | site-specific integrase | - |
| N4697_RS25210 (N4697_025215) | 21073..21348 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| N4697_RS25215 (N4697_025220) | 21342..21986 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| N4697_RS25220 (N4697_025225) | 22215..23186 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| N4697_RS25225 (N4697_025230) | 23191..23583 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| N4697_RS25230 (N4697_025235) | 23588..24859 | - | 1272 | WP_171883726.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| N4697_RS25235 (N4697_025240) | 24859..25296 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N4697_RS25240 (N4697_025245) | 25293..25541 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| N4697_RS25245 (N4697_025250) | 25959..26861 | + | 903 | WP_171883728.1 | DUF1281 domain-containing protein | - |
| N4697_RS25250 (N4697_025255) | 26858..27169 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| N4697_RS25255 (N4697_025260) | 27245..27928 | + | 684 | WP_171883727.1 | DNA methylase | - |
| N4697_RS25260 (N4697_025265) | 27929..28150 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| N4697_RS25265 (N4697_025270) | 28131..28597 | + | 467 | Protein_35 | DUF1380 family protein | - |
| N4697_RS25270 (N4697_025275) | 28648..29418 | + | 771 | WP_001434682.1 | hypothetical protein | - |
| N4697_RS25275 (N4697_025280) | 29835..30260 | + | 426 | WP_001198889.1 | antirestriction protein | - |
| N4697_RS25280 (N4697_025285) | 30307..30729 | + | 423 | WP_058684789.1 | DUF1380 family protein | - |
| N4697_RS25285 (N4697_025290) | 30726..30917 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| N4697_RS25290 (N4697_025295) | 31688..32215 | + | 528 | WP_054192186.1 | single-stranded DNA-binding protein | - |
| N4697_RS25295 (N4697_025300) | 32272..32505 | + | 234 | WP_001042948.1 | DUF905 domain-containing protein | - |
| N4697_RS25300 (N4697_025305) | 32567..34525 | + | 1959 | WP_284166987.1 | ParB/RepB/Spo0J family partition protein | - |
| N4697_RS25305 (N4697_025310) | 34580..35014 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| N4697_RS25310 (N4697_025315) | 35011..35730 | + | 720 | WP_062893863.1 | plasmid SOS inhibition protein A | - |
| N4697_RS25315 (N4697_025320) | 35727..36323 | + | 597 | Protein_45 | hypothetical protein | - |
| N4697_RS25320 (N4697_025325) | 36785..37285 | + | 501 | WP_000117624.1 | antirestriction protein ArdA | - |
| N4697_RS25325 (N4697_025330) | 37528..37770 | + | 243 | WP_001463981.1 | hypothetical protein | - |
| N4697_RS25330 (N4697_025335) | 38014..38448 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| N4697_RS25335 (N4697_025340) | 38541..38807 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| N4697_RS25340 (N4697_025345) | 38872..39786 | + | 915 | WP_000038334.1 | Recombination-promoting nuclease RpnA | VF |
| N4697_RS25345 (N4697_025350) | 39786..40007 | + | 222 | WP_001604501.1 | hypothetical protein | - |
| N4697_RS25350 (N4697_025355) | 40038..40289 | - | 252 | WP_000148292.1 | hypothetical protein | - |
| N4697_RS25355 (N4697_025360) | 40875..41723 | + | 849 | WP_001077051.1 | DUF4942 domain-containing protein | - |
| N4697_RS25360 (N4697_025365) | 41809..42144 | - | 336 | WP_000157100.1 | hypothetical protein | - |
| N4697_RS25365 (N4697_025370) | 42376..42708 | + | 333 | WP_001281051.1 | plasmid mobilization protein MobA | - |
| N4697_RS25370 (N4697_025375) | 42719..45418 | + | 2700 | WP_262934977.1 | Protein TraI | Relaxase |
| N4697_RS25375 (N4697_025380) | 45455..47746 | - | 2292 | WP_262934978.1 | F-type conjugative transfer protein TrbC | - |
| N4697_RS25380 (N4697_025385) | 47739..48809 | - | 1071 | WP_262934979.1 | IncI1-type conjugal transfer protein TrbB | - |
| N4697_RS25385 (N4697_025390) | 48828..50036 | - | 1209 | WP_241555764.1 | IncI1-type conjugal transfer protein TrbA | - |
| N4697_RS25390 (N4697_025395) | 50298..51206 | - | 909 | WP_262934980.1 | hypothetical protein | - |
| N4697_RS25395 (N4697_025400) | 51838..51933 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| N4697_RS25400 (N4697_025405) | 51998..52174 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| N4697_RS25405 (N4697_025410) | 52383..52592 | - | 210 | WP_000416064.1 | hemolysin expression modulator Hha | - |
| N4697_RS25410 (N4697_025415) | 52690..53304 | - | 615 | WP_262934981.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| N4697_RS25415 (N4697_025420) | 53380..55548 | - | 2169 | WP_241555765.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| N4697_RS25420 (N4697_025425) | 55645..56229 | - | 585 | WP_024247584.1 | IncI1-type conjugal transfer protein TraX | - |
| N4697_RS25425 (N4697_025430) | 56258..57460 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| N4697_RS25430 (N4697_025435) | 57427..58041 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| N4697_RS25435 (N4697_025440) | 58041..61085 | - | 3045 | WP_262934982.1 | IncI1-type conjugal transfer protein TraU | - |
| N4697_RS25440 (N4697_025445) | 61175..61975 | - | 801 | WP_001164790.1 | IncI1-type conjugal transfer protein TraT | - |
| N4697_RS25445 (N4697_025450) | 61959..62147 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| N4697_RS25450 (N4697_025455) | 62211..62615 | - | 405 | WP_000086955.1 | conjugal transfer protein TraR | - |
| N4697_RS25455 (N4697_025460) | 62665..63192 | - | 528 | WP_001055572.1 | conjugal transfer protein TraQ | - |
| N4697_RS25460 (N4697_025465) | 63192..63896 | - | 705 | WP_042012199.1 | IncI1-type conjugal transfer protein TraP | - |
| N4697_RS25465 (N4697_025470) | 63896..65185 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| N4697_RS25470 (N4697_025475) | 65188..66171 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| N4697_RS25475 (N4697_025480) | 66182..66874 | - | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| N4697_RS25480 (N4697_025485) | 66871..67218 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| N4697_RS25485 (N4697_025490) | 67236..71003 | - | 3768 | WP_262934983.1 | DUF5710 domain-containing protein | - |
| N4697_RS25490 (N4697_025495) | 71093..71644 | - | 552 | WP_262934984.1 | Phospholipase D | VF |
| N4697_RS25495 (N4697_025500) | 71659..71949 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| N4697_RS25500 (N4697_025505) | 71946..73094 | - | 1149 | WP_001024975.1 | putative protein YggR | VF |
| N4697_RS25505 (N4697_025510) | 73091..73909 | - | 819 | WP_262934985.1 | hypothetical protein | VF |
| N4697_RS25510 (N4697_025515) | 73906..74364 | - | 459 | WP_001079805.1 | hypothetical protein | VF |
| N4697_RS25515 (N4697_025520) | 74759..75343 | - | 585 | WP_001611722.1 | histidine phosphatase family protein | - |
| N4697_RS25520 (N4697_025525) | 75403..76605 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| N4697_RS25525 (N4697_025530) | 76691..77515 | - | 825 | WP_064198681.1 | conjugal transfer protein TraE | - |
| N4697_RS25530 (N4697_025535) | 77723..77848 | + | 126 | Protein_88 | transposase | - |
| N4697_RS25535 (N4697_025540) | 77905..79230 | - | 1326 | WP_160393439.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| N4697_RS25540 (N4697_025545) | 79239..79814 | - | 576 | WP_262934986.1 | prepilin peptidase | - |
| N4697_RS25545 (N4697_025550) | 79831..80325 | - | 495 | WP_019842564.1 | hypothetical protein | VF |
| N4697_RS25550 (N4697_025555) | 80373..80978 | - | 606 | WP_019842565.1 | hypothetical protein | VF |
| N4697_RS25555 (N4697_025560) | 81003..82067 | - | 1065 | WP_160393437.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| N4697_RS25560 (N4697_025565) | 82057..83595 | - | 1539 | WP_160393436.1 | Putative type II secretion system protein E | VF |
| N4697_RS25565 (N4697_025570) | 83585..84082 | - | 498 | WP_254837503.1 | type IV pilus biogenesis protein PilP | - |
| N4697_RS25570 (N4697_025575) | 84027..85334 | - | 1308 | WP_160393434.1 | type 4b pilus protein PilO2 | - |
| N4697_RS25575 (N4697_025580) | 85342..86988 | - | 1647 | WP_262934987.1 | Outer membrane lipoprotein BfpB | VF |
| N4697_RS25580 (N4697_025585) | 87005..87475 | - | 471 | WP_019842571.1 | type IV pilus biogenesis protein PilM | - |
| N4697_RS25585 (N4697_025590) | 87487..88818 | - | 1332 | WP_171883737.1 | hypothetical protein | VF |
| N4697_RS25590 (N4697_025595) | 88962..89657 | - | 696 | WP_262934988.1 | hypothetical protein | - |
| N4697_RS25595 (N4697_025600) | 89782..89925 | - | 144 | WP_019842574.1 | hypothetical protein | - |
| N4697_RS25600 (N4697_025605) | 90087..90668 | - | 582 | WP_262934989.1 | hypothetical protein | - |
| N4697_RS25605 (N4697_025610) | 90665..90943 | - | 279 | WP_089589777.1 | hypothetical protein | - |
| N4697_RS25610 (N4697_025615) | 90972..91553 | - | 582 | WP_262934990.1 | hypothetical protein | - |
| N4697_RS25615 (N4697_025620) | 91567..92247 | - | 681 | WP_262934991.1 | conjugal transfer protein TraC | - |
| N4697_RS25620 (N4697_025625) | 92502..93035 | - | 534 | WP_024186483.1 | transcription termination/antitermination NusG family protein | - |
| N4697_RS25625 (N4697_025630) | 93477..93764 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| N4697_RS25630 (N4697_025635) | 93682..93945 | - | 264 | WP_023156844.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|