MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 143631 bp
Accession: NZ_CP123261 Location: 1..143631 Organism: Escherichia coli strain YZLc4-1 Replicon: plasmid pYZLc4-1_143k
Accession: NZ_CP123261 Location: 1..143631 Organism: Escherichia coli strain YZLc4-1 Replicon: plasmid pYZLc4-1_143k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4697_RS23480 (N4697_023485) | 1..861 | + | 861 | WP_001076427.1 | replication protein RepA | - |
| N4697_RS23485 (N4697_023490) | 1260..2465 | + | 1206 | WP_000817632.1 | Plasmid partition protein A | VF |
| N4697_RS23490 (N4697_023495) | 2462..3427 | + | 966 | WP_000725192.1 | ParB family protein | - |
| N4697_RS23495 (N4697_023500) | 3694..5400 | + | 1707 | WP_000067710.1 | hypothetical protein | - |
| N4697_RS23500 (N4697_023505) | 5460..7049 | + | 1590 | WP_118940266.1 | hypothetical protein | - |
| N4697_RS23505 (N4697_023510) | 7059..7871 | + | 813 | WP_000041767.1 | hypothetical protein | - |
| N4697_RS23510 (N4697_023515) | 8030..8488 | + | 459 | WP_223689991.1 | hypothetical protein | - |
| N4697_RS23515 (N4697_023520) | 8500..9009 | + | 510 | WP_000509939.1 | hypothetical protein | - |
| N4697_RS23520 (N4697_023525) | 9307..10299 | + | 993 | WP_000944483.1 | MazG-like family protein | - |
| N4697_RS23525 (N4697_023530) | 10654..10809 | - | 156 | WP_001313475.1 | type I toxin-antitoxin system toxin HokD | - |
| N4697_RS23530 (N4697_023535) | 10991..11236 | - | 246 | WP_118940273.1 | hypothetical protein | - |
| N4697_RS23535 (N4697_023540) | 11287..12132 | - | 846 | WP_118940267.1 | Replication protein repL | - |
| N4697_RS23540 (N4697_023545) | 12162..12962 | - | 801 | WP_001187875.1 | phage antirepressor KilAC domain-containing protein | - |
| N4697_RS23545 (N4697_023550) | 13127..14170 | - | 1044 | WP_058664406.1 | phage antirepressor KilAC domain-containing protein | - |
| N4697_RS23550 (N4697_023555) | 14167..14388 | - | 222 | WP_000245709.1 | host cell division inhibitor Icd-like protein | - |
| N4697_RS23555 (N4697_023560) | 14966..15946 | + | 981 | WP_000019441.1 | IS5 family transposase ISKpn26 | Transposase |
| N4697_RS23560 (N4697_023565) | 16210..16722 | + | 513 | WP_000039791.1 | hypothetical protein | - |
| N4697_RS23565 (N4697_023570) | 16726..17265 | + | 540 | WP_001033469.1 | DUF5384 family protein | - |
| N4697_RS23570 (N4697_023575) | 17346..17912 | + | 567 | WP_000188923.1 | hypothetical protein | - |
| N4697_RS23575 (N4697_023580) | 17923..18534 | + | 612 | WP_001697755.1 | hypothetical protein | - |
| N4697_RS23580 (N4697_023585) | 18549..19430 | + | 882 | WP_000926355.1 | hypothetical protein | - |
| N4697_RS23585 (N4697_023590) | 19512..22934 | + | 3423 | WP_118940365.1 | transglycosylase SLT domain-containing protein | - |
| N4697_RS23590 (N4697_023595) | 22934..23290 | + | 357 | WP_000002800.1 | hypothetical protein | - |
| N4697_RS23595 (N4697_023600) | 23287..24720 | + | 1434 | WP_000047920.1 | bleomycin hydrolase | - |
| N4697_RS23600 (N4697_023605) | 24720..25556 | + | 837 | WP_118940269.1 | phage tail protein | - |
| N4697_RS23605 (N4697_023610) | 25635..26069 | + | 435 | WP_001286328.1 | hypothetical protein | - |
| N4697_RS23610 (N4697_023615) | 26573..26785 | + | 213 | Protein_26 | tail fiber protein | - |
| N4697_RS23615 (N4697_023620) | 27827..28024 | + | 198 | Protein_27 | phage tail protein | - |
| N4697_RS23620 (N4697_023625) | 29543..30088 | + | 546 | WP_023356302.1 | tail assembly chaperone | - |
| N4697_RS23625 (N4697_023630) | 30123..30635 | - | 513 | WP_023356301.1 | tail fiber assembly protein | - |
| N4697_RS23630 (N4697_023635) | 30647..33127 | - | 2481 | WP_106121214.1 | phage tail protein | - |
| N4697_RS23635 (N4697_023640) | 33175..33735 | - | 561 | WP_000905118.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| N4697_RS23640 (N4697_023645) | 33881..34144 | + | 264 | WP_236918836.1 | phage holin family protein | - |
| N4697_RS23645 (N4697_023650) | 34212..34541 | + | 330 | WP_000887652.1 | phage holin family protein | - |
| N4697_RS23650 (N4697_023655) | 34538..34981 | + | 444 | WP_000580776.1 | hypothetical protein | - |
| N4697_RS23655 (N4697_023660) | 34968..35570 | + | 603 | WP_000164724.1 | hypothetical protein | - |
| N4697_RS23660 (N4697_023665) | 35572..37491 | + | 1920 | WP_001682275.1 | hypothetical protein | - |
| N4697_RS23665 (N4697_023670) | 37488..37853 | + | 366 | WP_015974237.1 | hypothetical protein | - |
| N4697_RS23670 (N4697_023675) | 37866..40853 | + | 2988 | WP_118940252.1 | hypothetical protein | - |
| N4697_RS23675 (N4697_023680) | 40843..41151 | + | 309 | WP_015974235.1 | hypothetical protein | - |
| N4697_RS23680 (N4697_023685) | 41263..41868 | - | 606 | WP_015974234.1 | hypothetical protein | - |
| N4697_RS23685 (N4697_023690) | 42087..42881 | - | 795 | WP_066019276.1 | hypothetical protein | - |
| N4697_RS23690 (N4697_023695) | 43079..43567 | - | 489 | WP_000068865.1 | single-stranded DNA-binding protein | - |
| N4697_RS23695 (N4697_023700) | 43736..44293 | + | 558 | WP_024175649.1 | lysozyme | - |
| N4697_RS23700 (N4697_023705) | 44585..45604 | - | 1020 | WP_000132941.1 | head processing protein | - |
| N4697_RS23705 (N4697_023710) | 45597..47306 | - | 1710 | WP_073028519.1 | phage portal protein | - |
| N4697_RS23710 (N4697_023715) | 47382..54149 | + | 6768 | WP_118940254.1 | N-6 DNA methylase | - |
| N4697_RS23715 (N4697_023720) | 54183..54623 | + | 441 | WP_000224043.1 | hypothetical protein | - |
| N4697_RS23720 (N4697_023725) | 54620..54868 | + | 249 | WP_000747846.1 | hypothetical protein | - |
| N4697_RS23725 (N4697_023730) | 54921..55961 | + | 1041 | WP_233336894.1 | DUF2971 domain-containing protein | - |
| N4697_RS23730 (N4697_023735) | 56059..56700 | - | 642 | WP_016246529.1 | hypothetical protein | - |
| N4697_RS23735 (N4697_023740) | 56889..57221 | - | 333 | Protein_51 | Ref family protein | - |
| N4697_RS23740 (N4697_023745) | 57494..58270 | + | 777 | WP_118940364.1 | MBL fold metallo-hydrolase | - |
| N4697_RS23745 (N4697_023750) | 58286..59275 | + | 990 | WP_000104482.1 | HTH-type transcriptional regulator CdhR | VF |
| N4697_RS23750 (N4697_023755) | 59302..59685 | + | 384 | WP_198290423.1 | ester cyclase | - |
| N4697_RS23755 (N4697_023760) | 59792..60201 | - | 410 | Protein_55 | resolvase | - |
| N4697_RS23760 (N4697_023765) | 60370..61890 | - | 1521 | WP_118940363.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| N4697_RS23770 (N4697_023775) | 62633..62734 | - | 102 | Protein_58 | universal stress protein | - |
| N4697_RS23775 (N4697_023780) | 62769..63413 | - | 645 | Protein_59 | STAS domain-containing protein | - |
| N4697_RS23780 (N4697_023785) | 63490..63840 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| N4697_RS23785 (N4697_023790) | 64043..65056 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| N4697_RS23790 (N4697_023795) | 65214..65687 | + | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| N4697_RS23795 (N4697_023800) | 65818..66606 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| N4697_RS23800 (N4697_023805) | 66812..67159 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| N4697_RS23805 (N4697_023810) | 67153..67992 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| N4697_RS23810 (N4697_023815) | 68120..68323 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| N4697_RS23815 (N4697_023820) | 68479..69684 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| N4697_RS23820 (N4697_023825) | 69695..70000 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| N4697_RS23825 (N4697_023830) | 70044..70109 | + | 66 | Protein_69 | EAL domain-containing protein | - |
| N4697_RS23830 (N4697_023835) | 70227..70991 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| N4697_RS23835 (N4697_023840) | 71484..72068 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| N4697_RS23840 (N4697_023845) | 72068..73306 | - | 1239 | WP_118940248.1 | macrolide resistance MFS transporter Mrx(A) | - |
| N4697_RS23845 (N4697_023850) | 73303..74208 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| N4697_RS23850 (N4697_023855) | 74330..75034 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N4697_RS23855 (N4697_023860) | 75204..75485 | - | 282 | Protein_75 | transposase zinc-binding domain-containing protein | - |
| N4697_RS23860 (N4697_023865) | 75632..76492 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| N4697_RS23865 (N4697_023870) | 76692..77396 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| N4697_RS23870 (N4697_023875) | 77461..77775 | + | 315 | Protein_78 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| N4697_RS23875 (N4697_023880) | 77778..80729 | + | 2952 | WP_015344976.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| N4697_RS23880 (N4697_023885) | 80663..81139 | + | 477 | WP_223171565.1 | hypothetical protein | - |
| N4697_RS23885 (N4697_023890) | 81224..81928 | - | 705 | WP_001067784.1 | IS6 family transposase IS1006 | Transposase |
| N4697_RS23890 (N4697_023895) | 81992..82822 | + | 831 | Protein_82 | IS91-like element ISVsa3 family transposase | - |
| N4697_RS23895 (N4697_023900) | 82853..83737 | + | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| N4697_RS23900 (N4697_023905) | 83954..85168 | + | 1215 | WP_000214122.1 | Bicyclomycin resistance protein | ARG |
| N4697_RS23905 (N4697_023910) | 85196..85501 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| N4697_RS23910 (N4697_023915) | 85613..87106 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| N4697_RS23915 (N4697_023920) | 87342..87584 | - | 243 | Protein_87 | phosphoglucosamine mutase | - |
| N4697_RS23920 (N4697_023925) | 87671..88486 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| N4697_RS23925 (N4697_023930) | 88576..89666 | + | 1091 | WP_085940648.1 | IS4 family transposase ISAba1 | Transposase |
| N4697_RS23930 (N4697_023935) | 89863..90348 | - | 486 | WP_006581703.1 | hypothetical protein | - |
| N4697_RS23935 (N4697_023940) | 90574..92097 | - | 1524 | Protein_91 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| N4697_RS23940 (N4697_023945) | 92159..92911 | + | 753 | WP_000602738.1 | IS6 family transposase ISRle7 | Transposase |
| N4697_RS23945 (N4697_023950) | 92971..93258 | - | 288 | Protein_93 | AAC(3) family N-acetyltransferase | - |
| N4697_RS23950 (N4697_023955) | 93333..94358 | - | 1026 | WP_000742814.1 | Hygromycin-B 4-O-kinase | ARG |
| N4697_RS23955 (N4697_023960) | 94587..95363 | - | 777 | WP_001199192.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| N4697_RS23960 (N4697_023965) | 95477..96181 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N4697_RS23965 (N4697_023970) | 96229..96357 | + | 129 | WP_162720370.1 | hypothetical protein | - |
| N4697_RS23970 (N4697_023975) | 96421..96612 | + | 192 | Protein_98 | IS1380 family transposase | - |
| N4697_RS23975 (N4697_023980) | 96862..97737 | + | 876 | WP_013188475.1 | Beta-lactamase Toho-1 | ARG |
| N4697_RS23980 (N4697_023985) | 97772..98740 | + | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| N4697_RS23985 (N4697_023990) | 98797..99894 | + | 1098 | Protein_101 | TonB-dependent receptor | - |
| N4697_RS23990 (N4697_023995) | 99962..100498 | - | 537 | Protein_102 | PAS domain-containing protein | - |
| N4697_RS23995 (N4697_024000) | 100575..101278 | - | 704 | Protein_103 | IS6 family transposase IS15DII | Transposase |
| N4697_RS24000 (N4697_024005) | 101344..102858 | + | 1515 | Protein_104 | Tn3-like element TnAs1 family transposase | - |
| N4697_RS24005 (N4697_024010) | 102916..103158 | + | 243 | WP_000844627.1 | transposase | - |
| N4697_RS24010 (N4697_024015) | 103190..103840 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| N4697_RS24015 (N4697_024020) | 103946..105145 | + | 1200 | WP_001493765.1 | tetracycline efflux MFS transporter Tet(A) | - |
| N4697_RS24020 (N4697_024025) | 105177..106061 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| N4697_RS24025 (N4697_024030) | 106199..106591 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| N4697_RS24030 (N4697_024035) | 106595..108346 | + | 1752 | Protein_110 | Tn3-like element TnAs1 family transposase | - |
| N4697_RS24035 (N4697_024040) | 108379..108635 | - | 257 | Protein_111 | recombinase family protein | - |
| N4697_RS24040 (N4697_024045) | 108984..109295 | - | 312 | WP_016246567.1 | hypothetical protein | - |
| N4697_RS24045 (N4697_024050) | 109346..110377 | - | 1032 | WP_000067534.1 | site-specific integrase | - |
| N4697_RS24050 (N4697_024055) | 110385..110606 | - | 222 | WP_000542385.1 | hypothetical protein | - |
| N4697_RS24055 (N4697_024060) | 111211..111420 | + | 210 | WP_000874154.1 | hypothetical protein | - |
| N4697_RS24060 (N4697_024065) | 111531..112382 | + | 852 | WP_000611656.1 | phage repressor protein C1 | - |
| N4697_RS24065 (N4697_024070) | 112407..113891 | - | 1485 | WP_118940256.1 | terminase | - |
| N4697_RS24070 (N4697_024075) | 113891..115084 | - | 1194 | WP_032214401.1 | hypothetical protein | - |
| N4697_RS24075 (N4697_024080) | 115170..115622 | - | 453 | WP_001326849.1 | late promoter-activating protein | - |
| N4697_RS24080 (N4697_024085) | 115711..116754 | - | 1044 | WP_094318254.1 | DUF968 domain-containing protein | - |
| N4697_RS24085 (N4697_024090) | 116782..116961 | - | 180 | WP_000113018.1 | hypothetical protein | - |
| N4697_RS24090 (N4697_024095) | 116966..117346 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| N4697_RS24095 (N4697_024100) | 117346..117567 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N4697_RS24100 (N4697_024105) | 117640..118029 | - | 390 | WP_000506724.1 | S24 family peptidase | - |
| N4697_RS24105 (N4697_024110) | 118381..118788 | + | 408 | WP_223656859.1 | hypothetical protein | - |
| N4697_RS24110 (N4697_024115) | 118789..119145 | + | 357 | WP_001062545.1 | hypothetical protein | - |
| N4697_RS24115 (N4697_024120) | 120221..120451 | - | 231 | WP_223656858.1 | hypothetical protein | - |
| N4697_RS24120 (N4697_024125) | 120579..121757 | - | 1179 | WP_233336884.1 | hypothetical protein | - |
| N4697_RS24125 (N4697_024130) | 121952..122458 | - | 507 | WP_000021754.1 | hypothetical protein | - |
| N4697_RS24130 (N4697_024135) | 122531..123793 | - | 1263 | WP_000107689.1 | hypothetical protein | - |
| N4697_RS24135 (N4697_024140) | 124095..124796 | - | 702 | WP_000684845.1 | hypothetical protein | - |
| N4697_RS24140 (N4697_024145) | 124793..125470 | - | 678 | WP_001354545.1 | metallophosphoesterase | - |
| N4697_RS24145 (N4697_024150) | 125467..126093 | - | 627 | WP_000484110.1 | hypothetical protein | - |
| N4697_RS24150 (N4697_024155) | 126595..126750 | - | 156 | WP_118940272.1 | hypothetical protein | - |
| N4697_RS24155 (N4697_024160) | 126818..127396 | - | 579 | WP_118940258.1 | VRR-NUC domain-containing protein | - |
| N4697_RS24160 (N4697_024165) | 127399..127644 | - | 246 | WP_000840931.1 | hypothetical protein | - |
| N4697_RS24165 (N4697_024170) | 127791..128168 | + | 378 | WP_000235786.1 | hypothetical protein | - |
| N4697_RS24170 (N4697_024175) | 128178..129395 | + | 1218 | WP_118940259.1 | phage tail protein | - |
| N4697_RS24175 (N4697_024180) | 129399..130127 | + | 729 | WP_000896801.1 | hypothetical protein | - |
| N4697_RS24180 (N4697_024185) | 130114..130899 | + | 786 | WP_118940260.1 | baseplate | - |
| N4697_RS24185 (N4697_024190) | 130901..131917 | + | 1017 | WP_032219036.1 | hypothetical protein | - |
| N4697_RS24190 (N4697_024195) | 131910..132542 | + | 633 | WP_118940261.1 | baseplate protein | - |
| N4697_RS24195 (N4697_024200) | 132588..133586 | - | 999 | WP_118940262.1 | hypothetical protein | - |
| N4697_RS24200 (N4697_024205) | 133586..134950 | - | 1365 | WP_118940263.1 | replicative DNA helicase | - |
| N4697_RS24210 (N4697_024215) | 135417..135581 | - | 165 | WP_000146941.1 | DUF3927 family protein | - |
| N4697_RS24215 (N4697_024220) | 135581..136015 | - | 435 | WP_000467133.1 | TerB family tellurite resistance protein | - |
| N4697_RS24220 (N4697_024225) | 136531..136743 | - | 213 | WP_118940380.1 | hypothetical protein | - |
| N4697_RS24235 (N4697_024240) | 137587..139851 | - | 2265 | WP_118940264.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| N4697_RS24240 (N4697_024245) | 139848..140753 | - | 906 | WP_039022913.1 | recombination-associated protein RdgC | - |
| N4697_RS24245 (N4697_024250) | 140746..141030 | - | 285 | WP_001177860.1 | hypothetical protein | - |
| N4697_RS24250 (N4697_024255) | 141493..142281 | + | 789 | WP_118940265.1 | hypothetical protein | - |
| N4697_RS24255 (N4697_024260) | 142321..142743 | + | 423 | WP_000007769.1 | hypothetical protein | - |
| N4697_RS24260 (N4697_024265) | 142778..142909 | + | 132 | WP_001113883.1 | hypothetical protein | - |
| N4697_RS24265 (N4697_024270) | 142921..143313 | + | 393 | WP_001281114.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|