MGE detailed information
MGE type: Genomic_island MGE length: 36287 bp
Accession: NZ_CP123255 Location: 4188719..4225005 Organism: Escherichia coli strain YZMc17-1 Replicon: chromosome
Accession: NZ_CP123255 Location: 4188719..4225005 Organism: Escherichia coli strain YZMc17-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4680_RS20255 (4185244) | 4185244..4185969 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| N4680_RS20260 (4186006) | 4186006..4186545 | - | 540 | WP_000824114.1 | fimbrial protein | - |
| N4680_RS20265 (4186610) | 4186610..4187164 | - | 555 | WP_000695589.1 | type 1 fimbrial major subunit FimA | - |
| N4680_RS20270 (4187646) | 4187646..4188242 | - | 597 | WP_000044711.1 | type 1 fimbria switch DNA invertase FimE | - |
| N4680_RS20275 (4188719) | 4188719..4189321 | - | 603 | WP_000790583.1 | ISKra4 family transposase ISCep1 | VF |
| N4680_RS20280 (4190775) | 4190775..4191491 | + | 717 | WP_001360088.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| N4680_RS20285 (4191511) | 4191511..4192617 | + | 1107 | WP_001353974.1 | N-acetylneuraminate epimerase | - |
| N4680_RS20290 (4192682) | 4192682..4193662 | + | 981 | WP_001295601.1 | sialate O-acetylesterase | - |
| N4680_RS20295 (4193670) | 4193670..4194320 | - | 651 | WP_001037966.1 | HNH endonuclease | - |
| N4680_RS20300 (4194457) | 4194457..4194600 | + | 144 | Protein_3970 | HNH endonuclease | - |
| N4680_RS20305 (4195376) | 4195376..4195519 | - | 144 | Protein_3971 | hypothetical protein | - |
| N4680_RS20310 (4195604) | 4195604..4195801 | - | 198 | WP_001327226.1 | DUF957 domain-containing protein | - |
| N4680_RS20315 (4195821) | 4195821..4196309 | - | 489 | WP_061090820.1 | DUF5983 family protein | - |
| N4680_RS20320 (4196306) | 4196306..4196683 | - | 378 | WP_000854919.1 | TA system toxin CbtA family protein | Toxin Detail |
| N4680_RS20325 (4196730) | 4196730..4197104 | - | 375 | WP_061090819.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| N4680_RS20330 (4197267) | 4197267..4197488 | - | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| N4680_RS20335 (4197551) | 4197551..4198027 | - | 477 | WP_001186771.1 | RadC family protein | - |
| N4680_RS20340 (4198043) | 4198043..4198522 | - | 480 | WP_001703514.1 | antirestriction protein | - |
| N4680_RS20345 (4198604) | 4198604..4199422 | - | 819 | WP_001234688.1 | DUF932 domain-containing protein | - |
| N4680_RS20350 (4199608) | 4199608..4200492 | - | 885 | WP_000010380.1 | YfjP family GTPase | - |
| N4680_RS20355 (4200593) | 4200593..4201816 | + | 1224 | WP_061090817.1 | hypothetical protein | - |
| N4680_RS20360 (4203390) | 4203390..4204121 | + | 732 | WP_061090816.1 | inovirus Gp2 family protein | - |
| N4680_RS20365 (4204478) | 4204478..4205050 | + | 573 | WP_000991602.1 | hypothetical protein | - |
| N4680_RS20370 (4205119) | 4205119..4205355 | + | 237 | WP_000958153.1 | AlpA family transcriptional regulator | - |
| N4680_RS20375 (4205556) | 4205556..4206104 | + | 549 | WP_001167455.1 | hypothetical protein | - |
| N4680_RS20380 (4206122) | 4206122..4206370 | - | 249 | WP_001323514.1 | ProQ/FINO family protein | - |
| N4680_RS20385 (4206439) | 4206439..4206630 | - | 192 | WP_001366542.1 | hypothetical protein | - |
| N4680_RS20395 (4208449) | 4208449..4208535 | + | 87 | Protein_3989 | hypothetical protein | - |
| N4680_RS20400 (4208620) | 4208620..4208769 | + | 150 | Protein_3990 | hypothetical protein | - |
| N4680_RS20405 (4209173) | 4209173..4210042 | - | 870 | WP_045146950.1 | HNH endonuclease | - |
| N4680_RS20410 (4210222) | 4210222..4210860 | + | 639 | WP_045146948.1 | HNH endonuclease | - |
| N4680_RS20415 (4210943) | 4210943..4212622 | - | 1680 | WP_044525248.1 | glycoside hydrolase family 43 protein | - |
| N4680_RS20420 (4212681) | 4212681..4214120 | - | 1440 | WP_072199169.1 | MFS transporter | - |
| N4680_RS20425 (4214547) | 4214547..4215866 | + | 1320 | WP_224684402.1 | xylose isomerase | - |
| N4680_RS20430 (4216197) | 4216197..4217579 | + | 1383 | WP_048296553.1 | carbohydrate porin | - |
| N4680_RS20435 (4217892) | 4217892..4218851 | - | 960 | WP_004206730.1 | DUF523 and DUF1722 domain-containing protein | - |
| N4680_RS20440 (4218848) | 4218848..4219099 | - | 252 | Protein_3998 | DUF3833 family protein | - |
| N4680_RS20445 (4219105) | 4219105..4219761 | - | 657 | Protein_3999 | HNH endonuclease | - |
| N4680_RS20450 (4219967) | 4219967..4220152 | - | 186 | Protein_4000 | integrase | - |
| N4680_RS20455 (4220429) | 4220429..4220797 | + | 369 | WP_001275820.1 | hypothetical protein | - |
| N4680_RS20460 (4221014) | 4221014..4221760 | + | 747 | WP_061090812.1 | outer membrane beta-barrel protein | - |
| N4680_RS20465 (4221936) | 4221936..4223435 | + | 1500 | WP_072646256.1 | phosphoethanolamine transferase | - |
| N4680_RS20470 (4223740) | 4223740..4225005 | - | 1266 | WP_001218930.1 | Prophage integrase IntA ; Integrase | Integrase |
| N4680_RS20480 (4225472) | 4225472..4226491 | + | 1020 | WP_224684403.1 | NADPH-dependent aldehyde reductase Ahr | - |
| N4680_RS20485 (4226495) | 4226495..4227058 | - | 564 | WP_000896741.1 | gluconokinase | - |
| N4680_RS20490 (4227275) | 4227275..4228306 | + | 1032 | WP_001197410.1 | L-idonate 5-dehydrogenase | - |
| N4680_RS20495 (4228330) | 4228330..4229094 | + | 765 | WP_000998695.1 | gluconate 5-dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|