MGE detailed information
MGE type: Genomic_island MGE length: 65963 bp
Accession: NZ_CP123244 Location: 811944..877906 Organism: Escherichia coli strain YZMc3-1 Replicon: chromosome
Accession: NZ_CP123244 Location: 811944..877906 Organism: Escherichia coli strain YZMc3-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4691_RS03865 (807309) | 807309..807872 | + | 564 | WP_001613816.1 | type II secretion system minor pseudopilin GspH | - |
| N4691_RS03870 (807869) | 807869..808240 | + | 372 | WP_021557199.1 | type II secretion system minor pseudopilin GspI | - |
| N4691_RS03875 (808237) | 808237..808842 | + | 606 | WP_021557198.1 | type II secretion system minor pseudopilin GspJ | - |
| N4691_RS03880 (808839) | 808839..809816 | + | 978 | WP_021557197.1 | type II secretion system minor pseudopilin GspK | - |
| N4691_RS03885 (809813) | 809813..810991 | + | 1179 | WP_021557196.1 | type II secretion system protein GspL | - |
| N4691_RS03890 (810993) | 810993..811529 | + | 537 | WP_000942790.1 | GspM family type II secretion system protein YghD | - |
| N4691_RS03895 (811944) | 811944..812270 | - | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N4691_RS03900 (812267) | 812267..812530 | - | 264 | WP_025492088.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| N4691_RS03905 (812602) | 812602..813468 | - | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| N4691_RS03910 (813553) | 813553..813750 | - | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| N4691_RS03915 (813762) | 813762..814253 | - | 492 | WP_023155722.1 | DUF5983 family protein | - |
| N4691_RS03920 (814250) | 814250..814627 | - | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| N4691_RS03925 (814674) | 814674..815048 | - | 375 | WP_032153712.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin Detail |
| N4691_RS03930 (815128) | 815128..815349 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| N4691_RS03935 (815418) | 815418..815894 | - | 477 | WP_001186715.1 | RadC family protein | - |
| N4691_RS03940 (815910) | 815910..816395 | - | 486 | WP_032153711.1 | antirestriction protein | - |
| N4691_RS03945 (816487) | 816487..817305 | - | 819 | WP_021543391.1 | DUF932 domain-containing protein | - |
| N4691_RS03950 (817395) | 817395..817628 | - | 234 | WP_001278287.1 | DUF905 family protein | - |
| N4691_RS03955 (817634) | 817634..818311 | - | 678 | WP_001097302.1 | hypothetical protein | - |
| N4691_RS03960 (818459) | 818459..819139 | - | 681 | WP_001282919.1 | WYL domain-containing protein | - |
| N4691_RS03965 (819342) | 819342..820226 | - | 885 | WP_000010402.1 | 50S ribosome-binding GTPase | - |
| N4691_RS03970 (820411) | 820411..821541 | + | 1131 | WP_000147745.1 | hypothetical protein | - |
| N4691_RS03975 (823072) | 823072..823803 | + | 732 | WP_001075482.1 | inovirus Gp2 family protein | - |
| N4691_RS03980 (824227) | 824227..824931 | - | 705 | WP_001389195.1 | toll/interleukin-1 receptor domain-containing protein | - |
| N4691_RS03985 (826509) | 826509..827075 | + | 567 | WP_032153705.1 | inovirus-type Gp2 protein | - |
| N4691_RS03990 (827195) | 827195..827344 | - | 150 | WP_001421645.1 | hypothetical protein | - |
| N4691_RS03995 (827359) | 827359..827931 | + | 573 | WP_032153703.1 | hypothetical protein | - |
| N4691_RS04000 (828000) | 828000..828236 | + | 237 | WP_000958154.1 | AlpA family transcriptional regulator | - |
| N4691_RS04005 (828505) | 828505..829053 | + | 549 | WP_032153702.1 | hypothetical protein | - |
| N4691_RS04010 (829072) | 829072..829320 | - | 249 | WP_001349534.1 | ProQ/FINO family protein | - |
| N4691_RS04015 (829389) | 829389..829580 | - | 192 | WP_001323513.1 | hypothetical protein | - |
| N4691_RS04020 (829983) | 829983..830674 | - | 692 | Protein_790 | IS1 family transposase | - |
| N4691_RS04025 (830734) | 830734..830910 | + | 177 | Protein_791 | transketolase family protein | - |
| N4691_RS04030 (831099) | 831099..831274 | + | 176 | Protein_792 | transposase | - |
| N4691_RS04035 (832137) | 832137..832703 | + | 567 | WP_000919994.1 | hypothetical protein | - |
| N4691_RS04040 (832944) | 832944..833759 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| N4691_RS04045 (833820) | 833820..834623 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| N4691_RS04050 (834623) | 834623..835459 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| N4691_RS04055 (835765) | 835765..836007 | + | 243 | WP_000844627.1 | transposase | - |
| N4691_RS04060 (836039) | 836039..836689 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| N4691_RS04065 (836795) | 836795..837994 | + | 1200 | WP_032153701.1 | Tetracycline resistance protein, class C | ARG |
| N4691_RS04070 (837961) | 837961..838149 | - | 189 | Protein_800 | IS91 family transposase | - |
| N4691_RS04075 (838261) | 838261..838566 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| N4691_RS04080 (838594) | 838594..839808 | - | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| N4691_RS04085 (840025) | 840025..840909 | - | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| N4691_RS04090 (840940) | 840940..841596 | - | 657 | Protein_804 | IS91-like element ISVsa3 family transposase | - |
| N4691_RS04095 (841530) | 841530..841808 | - | 279 | WP_001349530.1 | P fimbrial regulatory protein KS71A | VF |
| N4691_RS04100 (842231) | 842231..842545 | + | 315 | WP_000930062.1 | Major pilu subunit operon regulatory protein PapB | VF |
| N4691_RS04105 (842752) | 842752..843015 | + | 264 | Protein_807 | hypothetical protein | VF |
| N4691_RS04110 (843466) | 843466..844698 | - | 1233 | WP_000271619.1 | dNTP triphosphohydrolase | - |
| N4691_RS04115 (844849) | 844849..846010 | - | 1162 | Protein_809 | IS3 family transposase IS3 | Transposase |
| N4691_RS04120 (846178) | 846178..847158 | + | 981 | WP_000174035.1 | thymidylate synthase | - |
| N4691_RS04125 (847155) | 847155..848099 | + | 945 | WP_000820616.1 | hypothetical protein | - |
| N4691_RS04130 (848102) | 848102..849184 | - | 1083 | WP_000637419.1 | XRE family transcriptional regulator | - |
| N4691_RS04135 (849651) | 849651..849917 | + | 267 | WP_032153698.1 | MazG-like family protein | - |
| N4691_RS04140 (850217) | 850217..850731 | - | 515 | Protein_814 | ISL3 family transposase ISEc38 | Transposase |
| N4691_RS04145 (851339) | 851339..854752 | + | 3414 | WP_000438165.1 | DEAD/DEAH box helicase family protein | - |
| N4691_RS04150 (854816) | 854816..856450 | + | 1635 | WP_000627728.1 | class I SAM-dependent DNA methyltransferase | - |
| N4691_RS04155 (856447) | 856447..857589 | + | 1143 | WP_000742120.1 | restriction endonuclease subunit S | - |
| N4691_RS04160 (857598) | 857598..859220 | + | 1623 | WP_000778955.1 | AAA family ATPase | - |
| N4691_RS04165 (859220) | 859220..860116 | + | 897 | WP_000499115.1 | hypothetical protein | - |
| N4691_RS04170 (860339) | 860339..860517 | - | 179 | Protein_820 | integrase | - |
| N4691_RS04175 (860747) | 860747..861484 | + | 738 | WP_169300720.1 | OmpW family outer membrane protein | - |
| N4691_RS04180 (861904) | 861904..862800 | + | 897 | WP_262940721.1 | WYL domain-containing protein | - |
| N4691_RS04185 (862849) | 862849..863928 | + | 1080 | WP_001207396.1 | hypothetical protein | - |
| N4691_RS04190 (863975) | 863975..865546 | + | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| N4691_RS04195 (865543) | 865543..865809 | + | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| N4691_RS04200 (865949) | 865949..866146 | + | 198 | WP_001238004.1 | hypothetical protein | - |
| N4691_RS04205 (866199) | 866199..867872 | + | 1674 | WP_025492097.1 | sulfatase-like hydrolase/transferase | - |
| N4691_RS04210 (868016) | 868016..869050 | - | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| N4691_RS04215 (869151) | 869151..869375 | + | 225 | WP_232379240.1 | IS1 family transposase IS1A | Transposase |
| N4691_RS04220 (869294) | 869294..869737 | + | 444 | WP_021547728.1 | IS1 family transposase | - |
| N4691_RS04225 (870315) | 870315..871709 | - | 1395 | WP_001037798.1 | carbohydrate porin | - |
| N4691_RS04230 (871904) | 871904..873334 | - | 1431 | WP_000813678.1 | glycoside hydrolase family 32 protein | - |
| N4691_RS04235 (873334) | 873334..874611 | - | 1278 | WP_001083368.1 | MFS transporter | - |
| N4691_RS04240 (874674) | 874674..876800 | - | 2127 | WP_000253907.1 | alpha-galactosidase | - |
| N4691_RS04245 (876896) | 876896..877906 | - | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| N4691_RS04250 (878056) | 878056..879240 | - | 1185 | WP_001218742.1 | tyrosine-type recombinase/integrase | - |
| N4691_RS04260 (879598) | 879598..880305 | - | 708 | WP_021557195.1 | DUF554 domain-containing protein | - |
| N4691_RS04265 (880458) | 880458..880541 | + | 84 | WP_212734937.1 | hypothetical protein | - |
| N4691_RS04270 (880704) | 880704..882839 | + | 2136 | WP_001383513.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|