MGE detailed information
MGE type: Genomic_island MGE length: 74421 bp
Accession: NZ_CP123240 Location: 4645071..4719491 Organism: Escherichia coli strain YZLc1-3 Replicon: chromosome
Accession: NZ_CP123240 Location: 4645071..4719491 Organism: Escherichia coli strain YZLc1-3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4725_RS22555 (4640442) | 4640442..4641626 | + | 1185 | WP_001218742.1 | tyrosine-type recombinase/integrase | - |
| N4725_RS22560 (4641776) | 4641776..4642786 | + | 1011 | WP_000053331.1 | substrate-binding domain-containing protein | - |
| N4725_RS22565 (4642882) | 4642882..4645008 | + | 2127 | WP_000253907.1 | alpha-galactosidase | - |
| N4725_RS22570 (4645071) | 4645071..4646348 | + | 1278 | WP_001083368.1 | MFS transporter | - |
| N4725_RS22575 (4646348) | 4646348..4647778 | + | 1431 | WP_000813678.1 | glycoside hydrolase family 32 protein | - |
| N4725_RS22580 (4647973) | 4647973..4649367 | + | 1395 | WP_001037798.1 | carbohydrate porin | - |
| N4725_RS22585 (4649945) | 4649945..4650232 | - | 288 | Protein_4420 | integrase core domain-containing protein | - |
| N4725_RS22590 (4650221) | 4650221..4650582 | - | 362 | Protein_4421 | IS1 family transposase IS1A | Transposase |
| N4725_RS22595 (4650632) | 4650632..4651666 | + | 1035 | WP_032153697.1 | tetratricopeptide repeat family protein | - |
| N4725_RS22600 (4651810) | 4651810..4653483 | - | 1674 | WP_025492097.1 | sulfatase-like hydrolase/transferase | - |
| N4725_RS22605 (4653536) | 4653536..4653733 | - | 198 | WP_001238004.1 | hypothetical protein | - |
| N4725_RS22610 (4653873) | 4653873..4654139 | - | 267 | WP_000766274.1 | YkgJ family cysteine cluster protein | - |
| N4725_RS22615 (4654136) | 4654136..4655707 | - | 1572 | WP_001100182.1 | ATP--cob(I)alamin adenosyltransferase | - |
| N4725_RS22620 (4655754) | 4655754..4656833 | - | 1080 | WP_262934537.1 | chemotaxis protein | - |
| N4725_RS22625 (4656882) | 4656882..4657778 | - | 897 | WP_000228490.1 | WYL domain-containing protein | - |
| N4725_RS22630 (4658198) | 4658198..4658935 | - | 738 | WP_001398114.1 | OmpW family outer membrane protein | - |
| N4725_RS22635 (4659165) | 4659165..4659343 | + | 179 | Protein_4430 | integrase | - |
| N4725_RS22640 (4659566) | 4659566..4660462 | - | 897 | WP_000499115.1 | hypothetical protein | - |
| N4725_RS22645 (4660462) | 4660462..4662084 | - | 1623 | WP_000778955.1 | AAA family ATPase | - |
| N4725_RS22650 (4662093) | 4662093..4663235 | - | 1143 | WP_000742120.1 | restriction endonuclease subunit S | - |
| N4725_RS22655 (4663232) | 4663232..4664866 | - | 1635 | WP_000627728.1 | class I SAM-dependent DNA methyltransferase | - |
| N4725_RS22660 (4664930) | 4664930..4668343 | - | 3414 | WP_000438165.1 | DEAD/DEAH box helicase family protein | - |
| N4725_RS22665 (4668951) | 4668951..4669465 | + | 515 | Protein_4436 | ISL3 family transposase ISEc38 | Transposase |
| N4725_RS22670 (4669765) | 4669765..4670031 | - | 267 | WP_032153698.1 | MazG-like family protein | - |
| N4725_RS22675 (4670498) | 4670498..4671580 | + | 1083 | WP_000637419.1 | XRE family transcriptional regulator | - |
| N4725_RS22680 (4671583) | 4671583..4672527 | - | 945 | WP_000820616.1 | hypothetical protein | - |
| N4725_RS22685 (4672524) | 4672524..4673504 | - | 981 | WP_000174035.1 | thymidylate synthase | - |
| N4725_RS22690 (4673672) | 4673672..4674833 | + | 1162 | Protein_4441 | IS3 family transposase IS3 | Transposase |
| N4725_RS22695 (4674984) | 4674984..4676216 | + | 1233 | WP_000271619.1 | dNTP triphosphohydrolase | - |
| N4725_RS22700 (4676667) | 4676667..4676930 | - | 264 | Protein_4443 | hypothetical protein | VF |
| N4725_RS22705 (4677137) | 4677137..4677451 | - | 315 | WP_000930062.1 | hypothetical protein | VF |
| N4725_RS22710 (4677874) | 4677874..4678152 | + | 279 | WP_001349530.1 | hypothetical protein | VF |
| N4725_RS22715 (4678086) | 4678086..4678742 | + | 657 | Protein_4446 | IS91-like element ISVsa3 family transposase | - |
| N4725_RS22720 (4678773) | 4678773..4679657 | + | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| N4725_RS22725 (4679874) | 4679874..4681088 | + | 1215 | WP_023300759.1 | Multidrug resistance protein MdtL | ARG |
| N4725_RS22730 (4681116) | 4681116..4681421 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| N4725_RS22735 (4681533) | 4681533..4681721 | + | 189 | Protein_4450 | IS91 family transposase | - |
| N4725_RS22740 (4681688) | 4681688..4682887 | - | 1200 | WP_032153701.1 | Multidrug resistance protein MdtG | ARG |
| N4725_RS22745 (4682993) | 4682993..4683643 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| N4725_RS22750 (4683675) | 4683675..4683917 | - | 243 | WP_000844627.1 | transposase | - |
| N4725_RS22755 (4684223) | 4684223..4685059 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| N4725_RS22760 (4685059) | 4685059..4685862 | - | 804 | WP_001082319.1 | hypothetical protein | ARG |
| N4725_RS22765 (4685923) | 4685923..4686738 | - | 816 | WP_001043260.1 | hypothetical protein | ARG |
| N4725_RS22770 (4686979) | 4686979..4687545 | - | 567 | WP_000919994.1 | hypothetical protein | - |
| N4725_RS22775 (4688408) | 4688408..4688583 | - | 176 | Protein_4458 | transposase | - |
| N4725_RS22780 (4688772) | 4688772..4688948 | - | 177 | Protein_4459 | transketolase family protein | - |
| N4725_RS22785 (4689008) | 4689008..4689699 | + | 692 | Protein_4460 | IS1 family transposase | - |
| N4725_RS22790 (4690102) | 4690102..4690293 | + | 192 | WP_001323513.1 | hypothetical protein | - |
| N4725_RS22795 (4690362) | 4690362..4690610 | + | 249 | WP_001349534.1 | ProQ/FINO family protein | - |
| N4725_RS22800 (4690629) | 4690629..4691177 | - | 549 | WP_032153702.1 | hypothetical protein | - |
| N4725_RS22805 (4691446) | 4691446..4691682 | - | 237 | WP_000958154.1 | AlpA family transcriptional regulator | - |
| N4725_RS22810 (4691751) | 4691751..4692323 | - | 573 | WP_032153703.1 | hypothetical protein | - |
| N4725_RS22815 (4692338) | 4692338..4692487 | + | 150 | WP_001421645.1 | hypothetical protein | - |
| N4725_RS22820 (4692607) | 4692607..4693173 | - | 567 | WP_032153705.1 | inovirus-type Gp2 protein | - |
| N4725_RS22825 (4694770) | 4694770..4696374 | - | 1605 | WP_001067608.1 | YfjI family protein | - |
| N4725_RS22830 (4696808) | 4696808..4697014 | + | 207 | WP_025492114.1 | hypothetical protein | - |
| N4725_RS22835 (4697026) | 4697026..4697286 | - | 261 | WP_223362175.1 | hypothetical protein | - |
| N4725_RS22840 (4697310) | 4697310..4697465 | + | 156 | WP_020923993.1 | hypothetical protein | - |
| N4725_RS22845 (4697559) | 4697559..4698290 | - | 732 | WP_032153707.1 | inovirus Gp2 family protein | - |
| N4725_RS22850 (4700041) | 4700041..4700850 | + | 810 | WP_032153709.1 | hypothetical protein | - |
| N4725_RS22855 (4700847) | 4700847..4701779 | - | 933 | WP_023155730.1 | hypothetical protein | - |
| N4725_RS22860 (4701886) | 4701886..4702770 | + | 885 | WP_024166630.1 | 50S ribosome-binding GTPase | - |
| N4725_RS22865 (4702889) | 4702889..4703566 | + | 678 | WP_023155728.1 | hypothetical protein | - |
| N4725_RS22870 (4703596) | 4703596..4703805 | + | 210 | WP_023155727.1 | DUF905 family protein | - |
| N4725_RS22875 (4703896) | 4703896..4704714 | + | 819 | WP_001234693.1 | DUF932 domain-containing protein | - |
| N4725_RS22880 (4704806) | 4704806..4705291 | + | 486 | WP_032153711.1 | antirestriction protein | - |
| N4725_RS22885 (4705307) | 4705307..4705783 | + | 477 | WP_001186715.1 | RadC family protein | - |
| N4725_RS22890 (4705852) | 4705852..4706073 | + | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| N4725_RS22895 (4706153) | 4706153..4706527 | + | 375 | WP_032153712.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin Detail |
| N4725_RS22900 (4706574) | 4706574..4706951 | + | 378 | WP_000854735.1 | TA system toxin CbtA family protein | Toxin Detail |
| N4725_RS22905 (4706948) | 4706948..4707439 | + | 492 | WP_023155722.1 | DUF5983 family protein | - |
| N4725_RS22910 (4707451) | 4707451..4707648 | + | 198 | WP_000839265.1 | DUF957 domain-containing protein | - |
| N4725_RS22915 (4707733) | 4707733..4708599 | + | 867 | WP_032153714.1 | DUF4942 domain-containing protein | - |
| N4725_RS22920 (4708671) | 4708671..4708934 | + | 264 | WP_025492088.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| N4725_RS22925 (4708931) | 4708931..4709257 | + | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N4725_RS22930 (4710140) | 4710140..4711678 | + | 1539 | WP_001187178.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| N4725_RS22935 (4712044) | 4712044..4713378 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| N4725_RS22940 (4713458) | 4713458..4715605 | + | 2148 | WP_001550474.1 | lysine decarboxylase CadA | - |
| N4725_RS22945 (4715664) | 4715664..4717121 | + | 1458 | WP_001550473.1 | dipeptide/tripeptide permease DtpC | - |
| N4725_RS22950 (4717358) | 4717358..4718875 | + | 1518 | WP_001550472.1 | lysine--tRNA ligase | - |
| N4725_RS22955 (4718994) | 4718994..4719167 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| N4725_RS22960 (4719195) | 4719195..4719491 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| N4725_RS22965 (4719720) | 4719720..4719992 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| N4725_RS22970 (4720004) | 4720004..4720234 | - | 231 | WP_001550470.1 | 4Fe-4S mono-cluster protein YjdI | - |
| N4725_RS22975 (4720414) | 4720414..4722045 | + | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| N4725_RS22980 (4722042) | 4722042..4722761 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|