MGE detailed information
MGE type: Prophage MGE length: 56764 bp
Accession: NZ_CP123240 Location: 3958520..4015283 Organism: Escherichia coli strain YZLc1-3 Replicon: chromosome
Accession: NZ_CP123240 Location: 3958520..4015283 Organism: Escherichia coli strain YZLc1-3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4725_RS19145 (3954796) | 3954796..3955749 | + | 954 | WP_001550665.1 | molybdenum cofactor insertion chaperone PaoD | - |
| N4725_RS19150 (3955928) | 3955928..3957055 | - | 1128 | WP_001550663.1 | MFS transporter | - |
| N4725_RS19155 (3957197) | 3957197..3958255 | - | 1059 | WP_122987197.1 | alpha/beta hydrolase | - |
| N4725_RS19160 (3958520) | 3958520..3959404 | + | 885 | WP_001119037.1 | HTH-type transcriptional regulator ArgP | VF |
| N4725_RS19165 (3959838) | 3959838..3960758 | - | 921 | WP_000365809.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| N4725_RS19170 (3960745) | 3960745..3961527 | - | 783 | WP_001550661.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| N4725_RS19175 (3961843) | 3961843..3965052 | + | 3210 | WP_001521910.1 | RNA-directed DNA polymerase | - |
| N4725_RS19180 (3965399) | 3965399..3965869 | + | 471 | WP_000201185.1 | hypothetical protein | - |
| N4725_RS19185 (3965866) | 3965866..3965968 | + | 103 | Protein_3756 | helix-turn-helix domain-containing protein | - |
| N4725_RS19190 (3966060) | 3966060..3966218 | + | 159 | Protein_3757 | integrase | - |
| N4725_RS19195 (3966724) | 3966724..3969057 | - | 2334 | WP_000783659.1 | primase-like DNA-binding domain-containing protein | - |
| N4725_RS19200 (3969072) | 3969072..3969392 | - | 321 | WP_000856729.1 | DUF5375 domain-containing protein | - |
| N4725_RS19205 (3969528) | 3969528..3969983 | - | 456 | WP_000459298.1 | hypothetical protein | - |
| N4725_RS19210 (3969976) | 3969976..3970263 | - | 288 | WP_001244670.1 | hypothetical protein | - |
| N4725_RS19215 (3970256) | 3970256..3970810 | - | 555 | WP_095908813.1 | host cell division inhibitor Icd-like protein | - |
| N4725_RS19220 (3970807) | 3970807..3971073 | - | 267 | WP_001149161.1 | AlpA family phage regulatory protein | - |
| N4725_RS19225 (3971625) | 3971625..3972359 | + | 735 | WP_048238813.1 | hypothetical protein | - |
| N4725_RS19230 (3972356) | 3972356..3972856 | + | 501 | WP_115969109.1 | ogr/Delta-like zinc finger family protein | - |
| N4725_RS19235 (3972930) | 3972930..3973502 | + | 573 | WP_000446132.1 | phage polarity suppression protein | - |
| N4725_RS19240 (3973704) | 3973704..3975089 | - | 1386 | WP_235839804.1 | HEPN domain-containing protein | - |
| N4725_RS19245 (3975061) | 3975061..3976266 | - | 1206 | WP_115969110.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| N4725_RS19250 (3976708) | 3976708..3976995 | - | 288 | WP_113450185.1 | hypothetical protein | - |
| N4725_RS19255 (3977038) | 3977038..3977202 | - | 165 | Protein_3770 | tail fiber domain-containing protein | - |
| N4725_RS19260 (3977467) | 3977467..3978591 | - | 1125 | WP_000783990.1 | acyltransferase | - |
| N4725_RS19265 (3978591) | 3978591..3980510 | - | 1920 | WP_052953372.1 | phage head-binding domain-containing protein | - |
| N4725_RS19270 (3980632) | 3980632..3980892 | + | 261 | WP_001543869.1 | Arc family DNA-binding protein | - |
| N4725_RS19275 (3980982) | 3980982..3983375 | - | 2394 | WP_109554165.1 | lytic transglycosylase domain-containing protein | - |
| N4725_RS19280 (3983376) | 3983376..3984707 | - | 1332 | WP_096970385.1 | phage DNA ejection protein | - |
| N4725_RS19285 (3984717) | 3984717..3985409 | - | 693 | WP_074014732.1 | DNA transfer protein | - |
| N4725_RS19290 (3985412) | 3985412..3985867 | - | 456 | WP_000614039.1 | DUF2824 family protein | - |
| N4725_RS19295 (3985867) | 3985867..3986715 | - | 849 | WP_167784486.1 | tail needle knob protein | - |
| N4725_RS19300 (3986715) | 3986715..3988133 | - | 1419 | WP_167784487.1 | packaged DNA stabilization protein gp10 | - |
| N4725_RS19305 (3988142) | 3988142..3988624 | - | 483 | WP_106475194.1 | packaged DNA stabilization gp4 family protein | - |
| N4725_RS19310 (3988599) | 3988599..3988784 | - | 186 | WP_000375639.1 | hypothetical protein | - |
| N4725_RS19315 (3988827) | 3988827..3990098 | - | 1272 | WP_001133481.1 | P22 phage major capsid protein family protein | - |
| N4725_RS19320 (3990110) | 3990110..3990994 | - | 885 | WP_000426729.1 | hypothetical protein | - |
| N4725_RS19325 (3991008) | 3991008..3993134 | - | 2127 | WP_106475198.1 | portal protein | - |
| N4725_RS19330 (3993137) | 3993137..3994549 | - | 1413 | WP_106475199.1 | PBSX family phage terminase large subunit | - |
| N4725_RS19335 (3994546) | 3994546..3994986 | - | 441 | WP_000113732.1 | hypothetical protein | - |
| N4725_RS19340 (3994989) | 3994989..3995231 | - | 243 | WP_000807788.1 | DUF2560 family protein | - |
| N4725_RS19345 (3995472) | 3995472..3996002 | + | 531 | WP_124046848.1 | hypothetical protein | - |
| N4725_RS19350 (3996039) | 3996039..3996227 | - | 189 | WP_112889108.1 | hypothetical protein | - |
| N4725_RS19355 (3996313) | 3996313..3996465 | - | 153 | WP_001139680.1 | hypothetical protein | - |
| N4725_RS19360 (3996453) | 3996453..3996890 | - | 438 | WP_112889107.1 | lysis protein | - |
| N4725_RS19365 (3996887) | 3996887..3997363 | - | 477 | WP_000229392.1 | glycoside hydrolase family protein | - |
| N4725_RS19370 (3997347) | 3997347..3997670 | - | 324 | WP_115969652.1 | phage holin, lambda family | - |
| N4725_RS19375 (3998339) | 3998339..3998962 | - | 624 | WP_060626370.1 | antitermination protein | - |
| N4725_RS19380 (3998959) | 3998959..3999147 | - | 189 | WP_000994515.1 | protein ninH | - |
| N4725_RS19385 (3999144) | 3999144..3999506 | - | 363 | WP_021512402.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N4725_RS19390 (3999503) | 3999503..3999793 | - | 291 | WP_000002230.1 | DUF1364 domain-containing protein | - |
| N4725_RS19395 (3999793) | 3999793..4000515 | - | 723 | WP_060626368.1 | DNA-binding protein | - |
| N4725_RS19400 (4000508) | 4000508..4000678 | - | 171 | WP_000566871.1 | protein NinF | - |
| N4725_RS19405 (4000675) | 4000675..4000857 | - | 183 | WP_001254251.1 | NinE family protein | - |
| N4725_RS19410 (4000854) | 4000854..4001264 | - | 411 | WP_021514113.1 | recombination protein NinB | - |
| N4725_RS19415 (4001464) | 4001464..4001739 | - | 276 | WP_060626366.1 | hypothetical protein | - |
| N4725_RS19420 (4001757) | 4001757..4001963 | - | 207 | WP_060626364.1 | hypothetical protein | - |
| N4725_RS19425 (4002040) | 4002040..4003920 | - | 1881 | WP_097750530.1 | toprim domain-containing protein | - |
| N4725_RS19430 (4004028) | 4004028..4004888 | - | 861 | WP_115969444.1 | replication protein | - |
| N4725_RS19435 (4004881) | 4004881..4005027 | - | 147 | WP_000166207.1 | DUF2740 family protein | - |
| N4725_RS19440 (4005062) | 4005062..4005343 | - | 282 | WP_000536662.1 | CII family transcriptional regulator | - |
| N4725_RS19445 (4005460) | 4005460..4005675 | - | 216 | WP_115969446.1 | helix-turn-helix transcriptional regulator | - |
| N4725_RS19450 (4005793) | 4005793..4006446 | + | 654 | WP_000872382.1 | LexA family transcriptional regulator | - |
| N4725_RS19455 (4006757) | 4006757..4006840 | + | 84 | Protein_3810 | antitermination protein N | - |
| N4725_RS19460 (4007116) | 4007116..4007367 | + | 252 | WP_000394299.1 | hypothetical protein | - |
| N4725_RS19465 (4007594) | 4007594..4007764 | + | 171 | WP_001183771.1 | hypothetical protein | - |
| N4725_RS19470 (4008021) | 4008021..4008626 | + | 606 | WP_053881390.1 | ERF family protein | - |
| N4725_RS19475 (4008626) | 4008626..4009009 | + | 384 | WP_085668475.1 | hypothetical protein | - |
| N4725_RS19480 (4009033) | 4009033..4009329 | + | 297 | WP_049084715.1 | DUF2856 family protein | - |
| N4725_RS19485 (4009349) | 4009349..4009630 | + | 282 | WP_049084717.1 | DUF5405 family protein | - |
| N4725_RS19490 (4009627) | 4009627..4009791 | + | 165 | WP_001214456.1 | DUF2737 family protein | - |
| N4725_RS19495 (4009788) | 4009788..4009982 | + | 195 | Protein_3818 | hypothetical protein | - |
| N4725_RS19500 (4010230) | 4010230..4010355 | + | 126 | Protein_3819 | DUF550 domain-containing protein | - |
| N4725_RS19505 (4010407) | 4010407..4011309 | + | 903 | WP_241230167.1 | DUF550 domain-containing protein | - |
| N4725_RS19510 (4011306) | 4011306..4011689 | + | 384 | WP_001355893.1 | hypothetical protein | - |
| N4725_RS19515 (4011686) | 4011686..4012312 | + | 627 | WP_115969041.1 | hypothetical protein | - |
| N4725_RS19520 (4013114) | 4013114..4013503 | + | 390 | WP_000506720.1 | S24 family peptidase | - |
| N4725_RS19525 (4013602) | 4013602..4013808 | + | 207 | Protein_3824 | hypothetical protein | - |
| N4725_RS19530 (4013899) | 4013899..4014246 | + | 348 | WP_000390730.1 | helix-turn-helix domain-containing protein | - |
| N4725_RS19535 (4014129) | 4014129..4015283 | + | 1155 | WP_244566537.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| N4725_RS19545 (4015488) | 4015488..4016741 | - | 1254 | WP_001550659.1 | glutamate-5-semialdehyde dehydrogenase | - |
| N4725_RS19550 (4016753) | 4016753..4017856 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| N4725_RS19555 (4018144) | 4018144..4019199 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| N4725_RS19560 (4019238) | 4019238..4019639 | - | 402 | WP_000174684.1 | sigma factor-binding protein Crl | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|