MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 44356 bp
Accession: NZ_CP122950 Location: 105309..149664 Organism: Helicobacter pylori strain BS28-1 Replicon: chromosome
Accession: NZ_CP122950 Location: 105309..149664 Organism: Helicobacter pylori strain BS28-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAP01_RS00480 (101874) | 101874..102314 | - | 441 | WP_286498324.1 | hypothetical protein | - |
| QAP01_RS00485 (102324) | 102324..103496 | - | 1173 | WP_140545320.1 | hypothetical protein | - |
| QAP01_RS00490 (103512) | 103512..104210 | - | 699 | WP_286498325.1 | TIR domain protein | - |
| QAP01_RS00495 (104430) | 104430..104687 | - | 258 | WP_286498326.1 | hypothetical protein | - |
| QAP01_RS00500 (104758) | 104758..105636 | + | 879 | WP_286498327.1 | signal peptide peptidase SppA | - |
| QAP01_RS00505 (105639) | 105639..106520 | + | 882 | WP_286498328.1 | formyltetrahydrofolate deformylase | - |
| QAP01_RS00510 (106521) | 106521..108981 | + | 2461 | Protein_99 | hypothetical protein | - |
| - (109259) | 109259..109336 | + | 78 | NuclAT_1 | - | - |
| QAP01_RS00515 (109609) | 109609..109809 | - | 201 | WP_286498329.1 | nickel-binding protein HpnL | - |
| QAP01_RS00520 (110073) | 110073..110888 | + | 816 | WP_286498330.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| QAP01_RS00525 (110926) | 110926..113010 | + | 2085 | WP_286498331.1 | ribonuclease J | - |
| QAP01_RS00530 (112994) | 112994..113983 | + | 990 | WP_286498332.1 | Arabinose 5-phosphate isomerase KdsD | VF |
| QAP01_RS00535 (113980) | 113980..115053 | + | 1074 | WP_286498334.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| QAP01_RS00540 (115259) | 115259..115513 | + | 255 | WP_286498335.1 | hypothetical protein | - |
| QAP01_RS00545 (115773) | 115773..116602 | + | 830 | Protein_106 | outer membrane beta-barrel protein | - |
| QAP01_RS00550 (116729) | 116729..117349 | - | 621 | WP_286498336.1 | hypothetical protein | - |
| QAP01_RS00555 (117451) | 117451..117705 | + | 255 | WP_001217158.1 | RNA-binding S4 domain-containing protein | - |
| QAP01_RS00560 (117730) | 117730..120492 | + | 2763 | WP_286498337.1 | isoleucine--tRNA ligase | - |
| QAP01_RS00565 (120509) | 120509..121423 | + | 915 | WP_180611540.1 | Type IV secretion system protein PtlH | VF |
| QAP01_RS00570 (121424) | 121424..122728 | + | 1305 | WP_097686035.1 | Flagellum-specific ATP synthase | VF |
| QAP01_RS00575 (122739) | 122739..123005 | + | 267 | WP_000445741.1 | hypothetical protein | VF |
| QAP01_RS00580 (123009) | 123009..123788 | + | 780 | WP_286498339.1 | UDP-N-acetylmuramate dehydrogenase | - |
| QAP01_RS00585 (123887) | 123887..124646 | + | 760 | Protein_114 | EcoRI family type II restriction endonuclease | - |
| QAP01_RS00590 (124627) | 124627..125590 | + | 964 | Protein_115 | adenine-specific methyltransferase EcoRI family protein | - |
| QAP01_RS00595 (125601) | 125601..126707 | - | 1107 | WP_286498341.1 | hypothetical protein | VF |
| QAP01_RS00600 (126708) | 126708..127604 | - | 897 | WP_286498748.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| QAP01_RS00605 (127612) | 127612..127953 | - | 342 | WP_286498343.1 | ribosome silencing factor | - |
| QAP01_RS00610 (128013) | 128013..128459 | + | 447 | WP_286498345.1 | preQ(1) synthase | - |
| QAP01_RS00615 (128598) | 128598..129515 | - | 918 | WP_286498348.1 | hypothetical protein | - |
| QAP01_RS00620 (129655) | 129655..131447 | - | 1793 | Protein_121 | DUF262 domain-containing protein | - |
| QAP01_RS00625 (131447) | 131447..131935 | - | 489 | WP_286498350.1 | hypothetical protein | - |
| QAP01_RS00640 (136371) | 136371..136799 | + | 429 | Protein_123 | hypothetical protein | - |
| QAP01_RS00645 (136800) | 136800..138527 | + | 1728 | WP_286498352.1 | Conjugal transfer protein TraG | VF |
| QAP01_RS00650 (138802) | 138802..139083 | - | 282 | WP_000921926.1 | YafQ family addiction module toxin | Toxin Detail |
| QAP01_RS00655 (139076) | 139076..139390 | - | 315 | WP_000065300.1 | hypothetical protein | Antitoxin Detail |
| QAP01_RS00660 (139726) | 139726..141636 | + | 1911 | WP_286498355.1 | relaxase/mobilization nuclease domain-containing protein | - |
| QAP01_RS00665 (141660) | 141660..142823 | - | 1164 | WP_286498357.1 | hypothetical protein | - |
| QAP01_RS00670 (142855) | 142855..143139 | - | 285 | WP_286498359.1 | hypothetical protein ; Integrase | Integrase |
| QAP01_RS00675 (143221) | 143221..143394 | - | 174 | Protein_130 | ParA family protein | - |
| QAP01_RS00680 (143391) | 143391..144062 | + | 672 | Protein_131 | conjugal transfer protein TrbL | - |
| QAP01_RS00685 (144135) | 144135..144816 | + | 682 | Protein_132 | CAAX protease | - |
| QAP01_RS00690 (144896) | 144896..145968 | - | 1073 | Protein_133 | Tyrosine recombinase XerH ; Integrase | Integrase |
| QAP01_RS00695 (146576) | 146576..147454 | - | 879 | WP_286498361.1 | YihY family inner membrane protein | - |
| QAP01_RS00700 (147454) | 147454..148302 | - | 849 | WP_286498364.1 | Biotin synthase | VF |
| QAP01_RS00705 (148428) | 148428..148553 | + | 126 | WP_286498366.1 | type III restriction endonuclease subunit R | - |
| QAP01_RS00710 (148613) | 148613..151057 | + | 2445 | WP_286498749.1 | DEAD/DEAH box helicase family protein | - |
| QAP01_RS00715 (151051) | 151051..152763 | + | 1713 | WP_286498367.1 | site-specific DNA-methyltransferase | - |
| QAP01_RS00720 (152888) | 152888..153751 | + | 864 | WP_286498368.1 | DNA/RNA non-specific endonuclease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|