MGE detailed information
MGE type: Prophage MGE length: 52458 bp
Accession: NZ_CP122768 Location: 2552883..2605340 Organism: Escherichia coli strain ETEC1738 Replicon: chromosome
Accession: NZ_CP122768 Location: 2552883..2605340 Organism: Escherichia coli strain ETEC1738 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY55_RS12590 (2548264) | 2548264..2548974 | + | 711 | WP_074398076.1 | YnfC family lipoprotein | - |
| QDY55_RS12595 (2548977) | 2548977..2549537 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| QDY55_RS12600 (2549572) | 2549572..2549913 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| QDY55_RS12605 (2550048) | 2550048..2550374 | + | 327 | WP_064226139.1 | YnfA family protein | - |
| QDY55_RS12610 (2550580) | 2550580..2551794 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QDY55_RS12615 (2551806) | 2551806..2552825 | + | 1020 | WP_064226138.1 | Zn-dependent oxidoreductase | - |
| QDY55_RS12620 (2553013) | 2553013..2553801 | - | 789 | Protein_2472 | Putative defective protein IntQ ; Integrase | Integrase |
| QDY55_RS12625 (2553832) | 2553832..2555403 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| QDY55_RS12630 (2555423) | 2555423..2555770 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| QDY55_RS12635 (2555770) | 2555770..2556417 | - | 648 | WP_001295212.1 | IS66 family transposase ISCro1 | Transposase |
| QDY55_RS12640 (2556504) | 2556504..2557016 | - | 513 | Protein_2476 | DUF3596 domain-containing protein | - |
| QDY55_RS12645 (2557036) | 2557036..2557287 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QDY55_RS12650 (2557360) | 2557360..2559831 | - | 2472 | WP_064226535.1 | exonuclease | - |
| QDY55_RS12655 (2559925) | 2559925..2560116 | - | 192 | WP_001083270.1 | lysis protein YdfD | - |
| QDY55_RS12660 (2560113) | 2560113..2560301 | - | 189 | WP_000854560.1 | cell division inhibition protein DicB | - |
| QDY55_RS12665 (2560804) | 2560804..2561004 | + | 201 | WP_064226536.1 | hypothetical protein | - |
| QDY55_RS12670 (2560973) | 2560973..2561338 | - | 366 | WP_001320327.1 | hypothetical protein | - |
| QDY55_RS12675 (2561350) | 2561350..2561502 | - | 153 | WP_000379591.1 | DUF1391 family protein | - |
| QDY55_RS12680 (2561671) | 2561671..2562078 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| QDY55_RS12685 (2562159) | 2562159..2562386 | + | 228 | WP_000909905.1 | Cro/CI family transcriptional regulator | - |
| QDY55_RS12690 (2562370) | 2562370..2562891 | + | 522 | WP_000705348.1 | toxin YdaT family protein | - |
| QDY55_RS12695 (2562872) | 2562872..2563837 | + | 966 | WP_064226537.1 | hypothetical protein | - |
| QDY55_RS12700 (2563878) | 2563878..2564273 | + | 396 | WP_064226538.1 | DUF977 family protein | - |
| QDY55_RS12705 (2564616) | 2564616..2566103 | + | 1488 | WP_000354584.1 | hypothetical protein | - |
| QDY55_RS12710 (2566473) | 2566473..2567522 | + | 1050 | Protein_2490 | ISNCY family transposase ISCARN112 | Transposase |
| QDY55_RS12715 (2567643) | 2567643..2567792 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QDY55_RS12720 (2568229) | 2568229..2568561 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QDY55_RS12725 (2568764) | 2568764..2569069 | - | 306 | WP_071593935.1 | protein YdfV | - |
| QDY55_RS12730 (2569094) | 2569094..2569333 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QDY55_RS12735 (2569333) | 2569333..2569620 | + | 288 | WP_282870746.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QDY55_RS12740 (2569692) | 2569692..2569847 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QDY55_RS12745 (2570064) | 2570064..2570315 | + | 252 | WP_000981000.1 | protein Rem | - |
| QDY55_RS12750 (2570382) | 2570382..2570660 | + | 279 | WP_032140164.1 | hypothetical protein | - |
| QDY55_RS12755 (2570662) | 2570662..2571711 | + | 1050 | WP_001597879.1 | DUF968 domain-containing protein | - |
| QDY55_RS12760 (2571725) | 2571725..2572477 | + | 753 | WP_001047135.1 | antitermination protein | - |
| QDY55_RS12765 (2572755) | 2572755..2572844 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QDY55_RS12770 (2572899) | 2572899..2573111 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QDY55_RS12775 (2573412) | 2573412..2573627 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QDY55_RS12780 (2573991) | 2573991..2574161 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| QDY55_RS12785 (2574381) | 2574381..2574596 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QDY55_RS12790 (2574601) | 2574601..2574911 | + | 311 | Protein_2506 | DUF1327 domain-containing protein | - |
| QDY55_RS12795 (2574908) | 2574908..2575441 | + | 534 | WP_001092971.1 | lysozyme | - |
| QDY55_RS12800 (2575438) | 2575438..2575935 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QDY55_RS12805 (2576297) | 2576297..2576509 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QDY55_RS12810 (2576520) | 2576520..2576708 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QDY55_RS12815 (2576711) | 2576711..2576776 | + | 66 | WP_122985912.1 | small protein YnfR | - |
| QDY55_RS12820 (2576781) | 2576781..2577011 | + | 231 | WP_000720962.1 | protein YnfN | - |
| QDY55_RS12825 (2577183) | 2577183..2577356 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QDY55_RS12830 (2577508) | 2577508..2577918 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QDY55_RS12835 (2577976) | 2577976..2578209 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QDY55_RS12840 (2578598) | 2578598..2579143 | + | 546 | WP_021557827.1 | DNA-packaging protein | - |
| QDY55_RS12845 (2579118) | 2579118..2581043 | + | 1926 | WP_112024291.1 | phage terminase large subunit family protein | - |
| QDY55_RS12850 (2581040) | 2581040..2581246 | + | 207 | WP_000198149.1 | gpW family protein | - |
| QDY55_RS12855 (2581243) | 2581243..2582844 | + | 1602 | WP_115224469.1 | phage portal protein | - |
| QDY55_RS12860 (2582825) | 2582825..2584144 | + | 1320 | WP_064226731.1 | S49 family peptidase | - |
| QDY55_RS12865 (2584154) | 2584154..2584486 | + | 333 | WP_001549228.1 | head decoration protein | - |
| QDY55_RS12870 (2584542) | 2584542..2585567 | + | 1026 | WP_096035105.1 | major capsid protein | - |
| QDY55_RS12875 (2585609) | 2585609..2586004 | + | 396 | WP_000158880.1 | DNA-packaging protein FI | - |
| QDY55_RS12880 (2586016) | 2586016..2586369 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| QDY55_RS12885 (2586381) | 2586381..2586959 | + | 579 | WP_000985123.1 | phage tail protein | - |
| QDY55_RS12890 (2586956) | 2586956..2587351 | + | 396 | WP_000683143.1 | phage minor tail U family protein | - |
| QDY55_RS12895 (2587359) | 2587359..2588099 | + | 741 | WP_001439072.1 | phage tail protein | - |
| QDY55_RS12900 (2588115) | 2588115..2588537 | + | 423 | WP_000479164.1 | phage minor tail protein G | - |
| QDY55_RS12905 (2588519) | 2588519..2588953 | + | 435 | WP_000459480.1 | phage tail assembly protein T | - |
| QDY55_RS12910 (2588946) | 2588946..2591525 | + | 2580 | WP_115224430.1 | phage tail tape measure protein | - |
| QDY55_RS12915 (2591522) | 2591522..2591851 | + | 330 | WP_000847345.1 | phage tail protein | - |
| QDY55_RS12920 (2591851) | 2591851..2592549 | + | 699 | WP_105321885.1 | phage minor tail protein L | - |
| QDY55_RS12925 (2592555) | 2592555..2593298 | + | 744 | WP_282870751.1 | C40 family peptidase | - |
| QDY55_RS12930 (2593295) | 2593295..2593837 | + | 543 | WP_001377948.1 | tail assembly protein | - |
| QDY55_RS12935 (2593898) | 2593898..2597377 | + | 3480 | WP_115224432.1 | host specificity protein J | - |
| QDY55_RS12940 (2597445) | 2597445..2598044 | + | 600 | WP_032292241.1 | Outer membrane protein X | VF |
| QDY55_RS12945 (2598109) | 2598109..2601459 | + | 3351 | WP_115224433.1 | prophage tail fiber N-terminal domain-containing protein | - |
| QDY55_RS12950 (2601459) | 2601459..2602034 | + | 576 | WP_000885610.1 | tail fiber assembly protein | - |
| QDY55_RS12955 (2602132) | 2602132..2602722 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QDY55_RS12960 (2603039) | 2603039..2603272 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QDY55_RS12965 (2603341) | 2603341..2603454 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QDY55_RS12970 (2604057) | 2604057..2605340 | + | 1284 | Protein_2542 | MHS family MFS transporter YdfJ | - |
| QDY55_RS12975 (2605430) | 2605430..2606890 | + | 1461 | WP_064226036.1 | mannitol dehydrogenase family protein | - |
| QDY55_RS12980 (2606926) | 2606926..2607129 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QDY55_RS12985 (2607306) | 2607306..2607992 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QDY55_RS12990 (2608081) | 2608081..2608827 | - | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|