MGE detailed information
MGE type: Prophage MGE length: 69609 bp
Accession: NZ_CP122634 Location: 2519636..2589244 Organism: Escherichia coli strain ETEC4085 Replicon: chromosome
Accession: NZ_CP122634 Location: 2519636..2589244 Organism: Escherichia coli strain ETEC4085 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW62_RS12560 (2515535) | 2515535..2516755 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| QDW62_RS12565 (2516880) | 2516880..2517575 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| QDW62_RS12570 (2517528) | 2517528..2518820 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| QDW62_RS12575 (2518979) | 2518979..2519593 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| QDW62_RS12580 (2519636) | 2519636..2520490 | - | 855 | WP_000526477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| QDW62_RS12585 (2520492) | 2520492..2521109 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| QDW62_RS12590 (2521120) | 2521120..2523543 | - | 2424 | WP_074151088.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDW62_RS12595 (2523604) | 2523604..2526030 | - | 2427 | WP_001761878.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| QDW62_RS12600 (2526229) | 2526229..2526534 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| QDW62_RS12605 (2526642) | 2526642..2527352 | + | 711 | WP_072104773.1 | YnfC family lipoprotein | - |
| QDW62_RS12610 (2527355) | 2527355..2527915 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| QDW62_RS12615 (2527950) | 2527950..2528291 | - | 342 | WP_000705209.1 | DUF1283 family protein | - |
| QDW62_RS12620 (2528426) | 2528426..2528752 | + | 327 | WP_001295395.1 | YnfA family protein | - |
| QDW62_RS12625 (2528958) | 2528958..2530172 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QDW62_RS12630 (2530184) | 2530184..2531203 | + | 1020 | WP_282839726.1 | Zn-dependent oxidoreductase | - |
| QDW62_RS12635 (2531391) | 2531391..2532671 | - | 1281 | WP_000877005.1 | DNA topoisomerase 1 ; Integrase | Integrase |
| QDW62_RS12640 (2532706) | 2532706..2532957 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| QDW62_RS12645 (2533030) | 2533030..2535501 | - | 2472 | WP_032166914.1 | exonuclease | - |
| QDW62_RS12650 (2535594) | 2535594..2535785 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QDW62_RS12655 (2535782) | 2535782..2535970 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QDW62_RS12660 (2536528) | 2536528..2536746 | - | 219 | WP_001171942.1 | protein YdfC | - |
| QDW62_RS12665 (2536776) | 2536776..2536904 | - | 129 | WP_000344964.1 | protein YdfB | - |
| QDW62_RS12670 (2536906) | 2536906..2537061 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QDW62_RS12675 (2537228) | 2537228..2537635 | - | 408 | WP_000448565.1 | DNA-binding transcriptional dual regulator DicA | - |
| QDW62_RS12680 (2537719) | 2537719..2537949 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QDW62_RS12685 (2537933) | 2537933..2538454 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| QDW62_RS12690 (2538435) | 2538435..2539400 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| QDW62_RS12695 (2539441) | 2539441..2539863 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| QDW62_RS12700 (2539860) | 2539860..2540349 | + | 490 | Protein_2481 | class I SAM-dependent methyltransferase | - |
| QDW62_RS12705 (2540827) | 2540827..2541126 | + | 300 | Protein_2482 | hypothetical protein | - |
| QDW62_RS12710 (2541161) | 2541161..2541526 | + | 366 | WP_000124098.1 | hypothetical protein | - |
| QDW62_RS12715 (2541526) | 2541526..2542713 | + | 1188 | WP_000937614.1 | IS91 family transposase IS91 | Transposase |
| QDW62_RS12720 (2543734) | 2543734..2544756 | + | 1023 | Protein_2485 | ISNCY family transposase ISCARN112 | Transposase |
| QDW62_RS12725 (2544877) | 2544877..2545026 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| QDW62_RS12730 (2545463) | 2545463..2545795 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QDW62_RS12735 (2545998) | 2545998..2546303 | - | 306 | WP_001326990.1 | protein YdfV | - |
| QDW62_RS12740 (2546328) | 2546328..2546567 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QDW62_RS12745 (2546567) | 2546567..2546854 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QDW62_RS12750 (2546926) | 2546926..2547081 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QDW62_RS12755 (2547298) | 2547298..2547549 | + | 252 | WP_000980994.1 | protein Rem | - |
| QDW62_RS12760 (2547616) | 2547616..2547894 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| QDW62_RS12765 (2547896) | 2547896..2548945 | + | 1050 | WP_001424248.1 | DUF968 domain-containing protein | - |
| QDW62_RS12770 (2548959) | 2548959..2549711 | + | 753 | WP_001047136.1 | antitermination protein | - |
| QDW62_RS12775 (2549989) | 2549989..2550078 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| QDW62_RS12780 (2550133) | 2550133..2550345 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QDW62_RS12785 (2550646) | 2550646..2550861 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QDW62_RS12790 (2551225) | 2551225..2551395 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| QDW62_RS12795 (2551615) | 2551615..2551830 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QDW62_RS12800 (2551835) | 2551835..2552146 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| QDW62_RS12805 (2552143) | 2552143..2552676 | + | 534 | WP_001092971.1 | lysozyme | - |
| QDW62_RS12810 (2552673) | 2552673..2553170 | + | 498 | WP_001071766.1 | DUF2514 domain-containing protein | - |
| QDW62_RS12815 (2553533) | 2553533..2553745 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QDW62_RS12820 (2553756) | 2553756..2553944 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| QDW62_RS12825 (2553947) | 2553947..2554012 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| QDW62_RS12830 (2554017) | 2554017..2554247 | + | 231 | WP_000720962.1 | protein YnfN | - |
| QDW62_RS12835 (2554419) | 2554419..2554592 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QDW62_RS12840 (2554744) | 2554744..2555154 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QDW62_RS12845 (2555212) | 2555212..2555445 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QDW62_RS12850 (2555834) | 2555834..2556379 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| QDW62_RS12855 (2556354) | 2556354..2558279 | + | 1926 | WP_001027314.1 | phage terminase large subunit family protein | - |
| QDW62_RS12860 (2558276) | 2558276..2558482 | + | 207 | WP_000198153.1 | gpW family protein | - |
| QDW62_RS12865 (2558479) | 2558479..2560080 | + | 1602 | WP_015675225.1 | phage portal protein | - |
| QDW62_RS12870 (2560061) | 2560061..2561380 | + | 1320 | WP_000123321.1 | S49 family peptidase | - |
| QDW62_RS12875 (2561390) | 2561390..2561722 | + | 333 | WP_001299443.1 | head decoration protein | - |
| QDW62_RS12880 (2561778) | 2561778..2562803 | + | 1026 | WP_000063274.1 | major capsid protein | - |
| QDW62_RS12885 (2562845) | 2562845..2563243 | + | 399 | WP_000158861.1 | DNA-packaging protein FI | - |
| QDW62_RS12890 (2563255) | 2563255..2563608 | + | 354 | WP_000752963.1 | head-tail joining protein | - |
| QDW62_RS12895 (2563620) | 2563620..2564198 | + | 579 | WP_000985129.1 | phage tail protein | - |
| QDW62_RS12900 (2564195) | 2564195..2564590 | + | 396 | WP_000683142.1 | phage minor tail U family protein | - |
| QDW62_RS12905 (2564598) | 2564598..2565338 | + | 741 | WP_015675224.1 | phage tail protein | - |
| QDW62_RS12910 (2565354) | 2565354..2565776 | + | 423 | WP_000479164.1 | phage minor tail protein G | - |
| QDW62_RS12915 (2565758) | 2565758..2566192 | + | 435 | WP_000459471.1 | phage tail assembly protein T | - |
| QDW62_RS12920 (2566185) | 2566185..2568746 | + | 2562 | WP_000840341.1 | phage tail tape measure protein | - |
| QDW62_RS12925 (2568743) | 2568743..2569072 | + | 330 | WP_000847342.1 | phage tail protein | - |
| QDW62_RS12930 (2569072) | 2569072..2569770 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| QDW62_RS12935 (2569775) | 2569775..2570518 | + | 744 | WP_000140768.1 | C40 family peptidase | - |
| QDW62_RS12940 (2570515) | 2570515..2571087 | + | 573 | WP_000847673.1 | tail assembly protein | - |
| QDW62_RS12945 (2571148) | 2571148..2574627 | + | 3480 | WP_282839761.1 | host specificity protein J | - |
| QDW62_RS12950 (2574695) | 2574695..2575294 | + | 600 | WP_001233110.1 | hypothetical protein | VF |
| QDW62_RS12955 (2575359) | 2575359..2578466 | + | 3108 | WP_000279160.1 | phage tail protein | - |
| QDW62_RS12960 (2578466) | 2578466..2579041 | + | 576 | WP_000885595.1 | tail fiber assembly protein | - |
| QDW62_RS12965 (2579139) | 2579139..2579729 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QDW62_RS12970 (2580046) | 2580046..2580279 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QDW62_RS12975 (2580348) | 2580348..2580461 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QDW62_RS12980 (2581063) | 2581063..2582346 | + | 1284 | Protein_2537 | MHS family MFS transporter YdfJ | - |
| QDW62_RS12985 (2582435) | 2582435..2583895 | + | 1461 | WP_000527813.1 | mannitol dehydrogenase family protein | - |
| QDW62_RS12990 (2583931) | 2583931..2584134 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QDW62_RS12995 (2584311) | 2584311..2584997 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QDW62_RS13000 (2585086) | 2585086..2585832 | - | 747 | WP_000636571.1 | hypothetical protein | VF |
| QDW62_RS13005 (2585969) | 2585969..2588014 | + | 2046 | WP_001459755.1 | peptidyl-dipeptidase Dcp | - |
| QDW62_RS13010 (2588059) | 2588059..2588577 | - | 519 | WP_001024745.1 | 2-oxo-tetronate isomerase | - |
| QDW62_RS13015 (2588852) | 2588852..2589244 | + | 393 | WP_000671735.1 | YdeI family stress tolerance OB fold protein | - |
| QDW62_RS13020 (2589499) | 2589499..2590389 | + | 891 | Protein_2545 | diguanylate cyclase DgcZ | - |
| QDW62_RS13025 (2590504) | 2590504..2590608 | - | 105 | WP_211180496.1 | protein MgtT | - |
| QDW62_RS13030 (2590608) | 2590608..2590703 | - | 96 | WP_000901367.1 | protein MgtS | - |
| QDW62_RS13035 (2590830) | 2590830..2592017 | - | 1188 | WP_001054152.1 | efflux MFS transporter YdeE | - |
| QDW62_RS13040 (2592212) | 2592212..2593111 | + | 900 | WP_000087221.1 | O-acetylserine/cysteine exporter | - |
| QDW62_RS13045 (2593156) | 2593156..2593854 | - | 699 | WP_000577188.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|