MGE detailed information
MGE type: Genomic_island MGE length: 12810 bp
Accession: NZ_CP122316 Location: 1288858..1301667 Organism: Escherichia coli strain HT-946 Replicon: chromosome
Accession: NZ_CP122316 Location: 1288858..1301667 Organism: Escherichia coli strain HT-946 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG48_RS06380 (1288858) | 1288858..1289124 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| QCG48_RS06385 (1289124) | 1289124..1290446 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| QCG48_RS06390 (1290758) | 1290758..1290966 | + | 209 | Protein_1247 | AraC family transcriptional regulator | - |
| QCG48_RS06395 (1291221) | 1291221..1292447 | + | 1227 | Protein_1248 | Outer membrane usher protein FimD | VF |
| QCG48_RS06400 (1292461) | 1292461..1292991 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| QCG48_RS06405 (1293004) | 1293004..1293507 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| QCG48_RS06410 (1293566) | 1293566..1294480 | + | 915 | WP_000520676.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| QCG48_RS06415 (1294814) | 1294814..1297093 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| QCG48_RS06420 (1297341) | 1297341..1297538 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| QCG48_RS06425 (1297613) | 1297613..1298374 | + | 762 | WP_000060495.1 | acid stress response transcriptional regulator YdeO | - |
| QCG48_RS06430 (1298776) | 1298776..1300458 | + | 1683 | WP_001295684.1 | sulfatase | - |
| QCG48_RS06435 (1300510) | 1300510..1301667 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| QCG48_RS06440 (1301633) | 1301633..1301755 | - | 123 | WP_120795387.1 | protein YneP | - |
| QCG48_RS06445 (1301958) | 1301958..1303643 | + | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| QCG48_RS06450 (1303681) | 1303681..1306053 | + | 2373 | WP_000832437.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.003 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.003 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.003 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.003 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.003 |