MGE detailed information
MGE type: Conjugative plasmid MGE length: 67031 bp
Accession: NZ_CP121361 Location: 1..67031 Organism: Escherichia coli strain rl0044 Replicon: plasmid pVP444
Accession: NZ_CP121361 Location: 1..67031 Organism: Escherichia coli strain rl0044 Replicon: plasmid pVP444
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P9060_RS28550 (P9060_28550) | 652..1683 | - | 1032 | WP_000907883.1 | plasmid replication initiator RepA | - |
| P9060_RS28555 (P9060_28555) | 2442..2945 | + | 504 | WP_000206175.1 | transcription termination/antitermination NusG family protein | - |
| P9060_RS28560 (P9060_28560) | 3043..3729 | + | 687 | WP_000206190.1 | DUF2913 family protein | - |
| P9060_RS28565 (P9060_28565) | 4023..4265 | + | 243 | WP_001245734.1 | hypothetical protein | - |
| P9060_RS28570 (P9060_28570) | 4275..4772 | + | 498 | WP_000559317.1 | hypothetical protein | - |
| P9060_RS28575 (P9060_28575) | 4772..5242 | + | 471 | WP_000269367.1 | hypothetical protein | VF |
| P9060_RS28580 (P9060_28580) | 5269..5694 | + | 426 | WP_000776569.1 | DotD/TraH family lipoprotein | - |
| P9060_RS28585 (P9060_28585) | 5691..6473 | + | 783 | WP_000872512.1 | hypothetical protein | VF |
| P9060_RS28590 (P9060_28590) | 6479..7651 | + | 1173 | WP_000380306.1 | Twitching mobility protein | VF |
| P9060_RS28595 (P9060_28595) | 7644..7904 | + | 261 | WP_000796496.1 | IcmT/TraK family protein | - |
| P9060_RS28600 (P9060_28600) | 7922..11365 | + | 3444 | WP_000189054.1 | DUF5710 domain-containing protein | - |
| P9060_RS28605 (P9060_28605) | 11380..11859 | + | 480 | WP_000853820.1 | hypothetical protein | - |
| P9060_RS28610 (P9060_28610) | 11879..12550 | + | 672 | WP_000753819.1 | hypothetical protein | VF |
| P9060_RS28615 (P9060_28615) | 12547..13590 | + | 1044 | WP_000199394.1 | DotH/IcmK family type IV secretion protein | - |
| P9060_RS28620 (P9060_28620) | 13593..14786 | + | 1194 | WP_000963756.1 | hypothetical protein | VF |
| P9060_RS28625 (P9060_28625) | 14787..15497 | + | 711 | WP_000842735.1 | conjugal transfer protein TraP | - |
| P9060_RS28630 (P9060_28630) | 15502..16032 | + | 531 | WP_024250743.1 | conjugal transfer protein TraQ | - |
| P9060_RS28635 (P9060_28635) | 16064..16471 | + | 408 | WP_001059622.1 | hypothetical protein | - |
| P9060_RS28640 (P9060_28640) | 16527..16796 | + | 270 | WP_001024052.1 | hypothetical protein | - |
| P9060_RS28645 (P9060_28645) | 16790..17401 | + | 612 | WP_000955158.1 | hypothetical protein | - |
| P9060_RS28650 (P9060_28650) | 17405..20461 | + | 3057 | WP_000906733.1 | hypothetical protein | VF |
| P9060_RS28655 (P9060_28655) | 20485..21705 | + | 1221 | WP_001039317.1 | conjugal transfer protein TraW | - |
| P9060_RS28660 (P9060_28660) | 21702..22232 | + | 531 | WP_278242791.1 | conjugal transfer protein TraX | - |
| P9060_RS28665 (P9060_28665) | 22297..22797 | + | 501 | WP_148277502.1 | hypothetical protein | - |
| P9060_RS28670 (P9060_28670) | 22799..23143 | + | 345 | WP_000061675.1 | hypothetical protein | - |
| P9060_RS28675 (P9060_28675) | 23225..25375 | + | 2151 | WP_000221823.1 | DotA/TraY family protein | - |
| P9060_RS28680 (P9060_28680) | 25393..25956 | + | 564 | WP_063097143.1 | hypothetical protein | - |
| P9060_RS28685 (P9060_28685) | 26090..26314 | + | 225 | WP_024250740.1 | hemolysin expression modulator Hha | - |
| P9060_RS28690 (P9060_28690) | 26574..26930 | + | 357 | WP_000839608.1 | hypothetical protein | - |
| P9060_RS28695 (P9060_28695) | 26969..27622 | + | 654 | WP_000090954.1 | DUF5710 domain-containing protein | - |
| P9060_RS28700 (P9060_28700) | 27982..28119 | + | 138 | WP_000078925.1 | Hok/Gef family protein | - |
| P9060_RS28705 (P9060_28705) | 28407..29780 | + | 1374 | WP_000020269.1 | hypothetical protein | - |
| P9060_RS28710 (P9060_28710) | 29790..30710 | + | 921 | WP_001099721.1 | hypothetical protein | - |
| P9060_RS28715 (P9060_28715) | 30700..32676 | + | 1977 | WP_278242792.1 | F-type conjugative transfer protein TrbC | - |
| P9060_RS28720 (P9060_28720) | 32689..33801 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| P9060_RS28725 (P9060_28725) | 33975..34265 | + | 291 | WP_278242790.1 | hypothetical protein | - |
| P9060_RS28730 (P9060_28730) | 34295..34795 | + | 501 | WP_015675113.1 | Cardiolipin synthase B | VF |
| P9060_RS28735 (P9060_28735) | 34904..38128 | + | 3225 | WP_089637578.1 | hypothetical protein | VF |
| P9060_RS28740 (P9060_28740) | 38222..38764 | + | 543 | WP_001005723.1 | hypothetical protein | - |
| P9060_RS28745 (P9060_28745) | 39179..39488 | + | 310 | Protein_39 | transposase | - |
| P9060_RS28750 (P9060_28750) | 39572..40129 | + | 558 | WP_000735639.1 | Attachment invasion locus protein | VF |
| P9060_RS28755 (P9060_28755) | 40311..40685 | - | 375 | WP_000604346.1 | PIN domain-containing protein | Toxin Detail |
| P9060_RS28760 (P9060_28760) | 40682..40885 | - | 204 | WP_001261052.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| P9060_RS28765 (P9060_28765) | 40989..43001 | - | 2013 | WP_000635641.1 | hypothetical protein | Relaxase |
| P9060_RS28770 (P9060_28770) | 43007..43342 | - | 336 | WP_000045231.1 | plasmid mobilization protein MobA | - |
| P9060_RS28775 (P9060_28775) | 43612..43926 | + | 315 | WP_000741300.1 | hypothetical protein | - |
| P9060_RS28780 (P9060_28780) | 44543..44713 | + | 171 | WP_071881852.1 | helix-turn-helix domain-containing protein | - |
| P9060_RS28785 (P9060_28785) | 44758..45388 | - | 631 | Protein_47 | DUF4942 domain-containing protein | - |
| P9060_RS28790 (P9060_28790) | 45443..45700 | - | 258 | WP_000174705.1 | hypothetical protein | - |
| P9060_RS28795 (P9060_28795) | 45814..46056 | - | 243 | WP_000540594.1 | hypothetical protein | - |
| P9060_RS28800 (P9060_28800) | 46323..46592 | + | 270 | Protein_50 | hypothetical protein | - |
| P9060_RS28805 (P9060_28805) | 46728..47228 | - | 501 | WP_000117637.1 | antirestriction protein ArdA | - |
| P9060_RS28810 (P9060_28810) | 47843..47941 | - | 99 | WP_148169729.1 | Hok/Gef family protein | - |
| P9060_RS28815 (P9060_28815) | 47904..47987 | - | 84 | Protein_53 | DUF5431 family protein | - |
| P9060_RS28820 (P9060_28820) | 48087..48395 | - | 309 | Protein_54 | hypothetical protein | - |
| P9060_RS28825 (P9060_28825) | 48482..49133 | + | 652 | Protein_55 | IS66-like element accessory protein TnpA | - |
| P9060_RS28830 (P9060_28830) | 49133..49479 | + | 347 | Protein_56 | IS66 family insertion sequence element accessory protein TnpB | - |
| P9060_RS28835 (P9060_28835) | 49499..51070 | + | 1572 | WP_032166661.1 | IS66 family transposase IS679 | Transposase |
| P9060_RS28840 (P9060_28840) | 51097..51868 | - | 772 | Protein_58 | hypothetical protein | - |
| P9060_RS28845 (P9060_28845) | 51914..52381 | - | 468 | WP_235392045.1 | DUF1380 family protein | - |
| P9060_RS28850 (P9060_28850) | 52362..52583 | - | 222 | WP_001104868.1 | hypothetical protein | - |
| P9060_RS28855 (P9060_28855) | 52584..53267 | - | 684 | WP_000085951.1 | DNA methylase | - |
| P9060_RS28860 (P9060_28860) | 53343..53654 | - | 312 | WP_077633986.1 | hypothetical protein | - |
| P9060_RS28865 (P9060_28865) | 53658..54080 | - | 423 | WP_000774834.1 | plasmid partitioning/stability family protein | - |
| P9060_RS28870 (P9060_28870) | 54083..55063 | - | 981 | WP_001218108.1 | plasmid segregation protein ParM | - |
| P9060_RS28875 (P9060_28875) | 55408..55761 | + | 354 | WP_001259260.1 | hypothetical protein | - |
| P9060_RS28880 (P9060_28880) | 55836..57044 | - | 1209 | WP_000343732.1 | IS256 family transposase IS1414 | Transposase |
| P9060_RS28885 (P9060_28885) | 57549..57704 | - | 156 | Protein_67 | transposase domain-containing protein | - |
| P9060_RS28890 (P9060_28890) | 57703..58038 | - | 336 | Protein_68 | IS3 family transposase | - |
| P9060_RS28895 (P9060_28895) | 58116..59552 | - | 1437 | WP_000860465.1 | Hemolysin secretion protein D, plasmid | VF |
| P9060_RS28900 (P9060_28900) | 59571..61694 | - | 2124 | WP_000376538.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| P9060_RS28905 (P9060_28905) | 61766..64840 | - | 3075 | WP_001142368.1 | Hemolysin, plasmid | VF |
| P9060_RS28910 (P9060_28910) | 64852..65364 | - | 513 | WP_015675120.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| P9060_RS28915 (P9060_28915) | 66552..66821 | - | 270 | WP_000079928.1 | type II toxin-antitoxin system antitoxin YacA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|