MGE detailed information
MGE type: Prophage MGE length: 64746 bp
Accession: NZ_CP121223 Location: 4456999..4521744 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Accession: NZ_CP121223 Location: 4456999..4521744 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5F89_RS24435 () | 4452423..4454117 | - | 1695 | Protein_4352 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| P5F89_RS24440 () | 4454288..4454470 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| P5F89_RS24445 () | 4454549..4455466 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| P5F89_RS24450 () | 4455639..4456559 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| P5F89_RS24455 () | 4456548..4457018 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| P5F89_RS24460 () | 4456999..4458417 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| P5F89_RS24465 () | 4458484..4458985 | - | 502 | Protein_4358 | HD domain-containing protein | - |
| P5F89_RS24470 () | 4459064..4459321 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| P5F89_RS24480 () | 4460535..4461299 | + | 765 | Protein_4361 | porin | - |
| P5F89_RS24490 () | 4462630..4462809 | + | 180 | Protein_4363 | porin | - |
| P5F89_RS24495 () | 4463437..4464134 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| P5F89_RS24500 () | 4464180..4465031 | + | 852 | WP_000218218.1 | protein deglycase HchA | - |
| P5F89_RS24505 () | 4465139..4466497 | - | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| P5F89_RS24510 () | 4466497..4467168 | - | 672 | WP_001347103.1 | Transcriptional regulatory protein HprR | VF |
| P5F89_RS24515 () | 4467301..4467714 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| P5F89_RS24520 () | 4467823..4468827 | + | 1005 | Protein_4369 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| P5F89_RS24525 () | 4468828..4469463 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| P5F89_RS24530 () | 4469721..4470371 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| P5F89_RS24535 () | 4471449..4471718 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| P5F89_RS24540 () | 4471775..4472443 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| P5F89_RS24545 () | 4472759..4474402 | + | 1644 | WP_014532281.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| P5F89_RS24550 () | 4474582..4475061 | - | 480 | Protein_4375 | DUF4376 domain-containing protein | - |
| P5F89_RS24555 () | 4475102..4475959 | - | 858 | Protein_4376 | IS3 family transposase IS600 | Transposase |
| P5F89_RS24560 () | 4476017..4476714 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| P5F89_RS24570 () | 4477123..4477338 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| P5F89_RS24575 () | 4477437..4478111 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24580 () | 4478108..4478458 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24585 () | 4478455..4478952 | + | 498 | Protein_4381 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24590 () | 4479008..4479705 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| P5F89_RS24605 () | 4480132..4480820 | - | 689 | Protein_4383 | bacteriophage antitermination protein Q | - |
| P5F89_RS24610 () | 4480817..4481182 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P5F89_RS24615 () | 4481183..4482241 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| P5F89_RS24620 () | 4482243..4482521 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| P5F89_RS24625 () | 4482689..4482844 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 4482856..4482914 | + | 59 | - | - | Antitoxin Detail |
| P5F89_RS24630 () | 4483496..4483912 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| P5F89_RS24635 () | 4483939..4484079 | + | 141 | Protein_4389 | DUF4224 domain-containing protein | - |
| P5F89_RS24640 () | 4484079..4485129 | + | 1051 | Protein_4390 | Tyrosine recombinase XerC ; Integrase | Integrase |
| P5F89_RS24650 () | 4485340..4486137 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| P5F89_RS24660 () | 4486475..4487737 | + | 1263 | Protein_4392 | Prophage integrase IntA ; Integrase | Integrase |
| P5F89_RS24670 () | 4489098..4490297 | + | 1200 | Protein_4394 | IS3 family transposase IS600 | Transposase |
| P5F89_RS24675 () | 4490298..4490504 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| P5F89_RS24680 () | 4490606..4492060 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| P5F89_RS24685 () | 4492403..4493119 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| P5F89_RS24695 () | 4493751..4495222 | - | 1472 | Protein_4398 | toxic metabolite efflux MATE transporter YeeO | - |
| P5F89_RS24705 () | 4495496..4496446 | - | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| P5F89_RS24710 () | 4496548..4497465 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| P5F89_RS24720 () | 4497924..4498859 | - | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| P5F89_RS24725 () | 4498921..4500000 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| P5F89_RS24730 () | 4500012..4500755 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| P5F89_RS24735 () | 4500752..4501261 | - | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| P5F89_RS24745 () | 4502672..4503881 | + | 1210 | Protein_4406 | IS3 family transposase IS629 | Transposase |
| P5F89_RS24750 () | 4504259..4504405 | - | 147 | Protein_4407 | transposase domain-containing protein | - |
| P5F89_RS24755 () | 4504507..4504641 | + | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| P5F89_RS24760 () | 4504742..4505071 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| P5F89_RS24765 () | 4505243..4505527 | - | 285 | Protein_4410 | hypothetical protein | - |
| P5F89_RS24770 () | 4505612..4506286 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24775 () | 4506283..4506453 | + | 171 | Protein_4412 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24780 () | 4506498..4506977 | - | 480 | Protein_4413 | IS3 family transposase IS629 | Transposase |
| P5F89_RS24785 () | 4507061..4508569 | - | 1509 | WP_289228622.1 | group II intron reverse transcriptase/maturase | - |
| P5F89_RS24790 () | 4509242..4509977 | - | 736 | Protein_4415 | IS3 family transposase | - |
| P5F89_RS24795 () | 4510033..4510212 | + | 180 | Protein_4416 | IS66 family insertion sequence element accessory protein TnpB | - |
| P5F89_RS24800 () | 4510209..4511810 | + | 1602 | WP_045177795.1 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24805 () | 4511844..4512230 | + | 387 | Protein_4418 | IS3 family transposase ISLad1 | Transposase |
| P5F89_RS24810 () | 4512282..4512635 | - | 354 | Protein_4419 | hypothetical protein ; Integrase | Integrase |
| P5F89_RS24815 () | 4512665..4513081 | - | 417 | Protein_4420 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24825 () | 4514346..4514633 | - | 288 | Protein_4422 | transposase | - |
| P5F89_RS24835 () | 4515964..4516869 | - | 906 | Protein_4424 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24840 () | 4516866..4517216 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24845 () | 4517213..4517887 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS24850 () | 4517969..4518805 | - | 837 | Protein_4427 | hypothetical protein ; Integrase | Integrase |
| P5F89_RS24855 () | 4518987..4520411 | + | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| P5F89_RS24860 () | 4520454..4520681 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| P5F89_RS24865 () | 4520695..4521753 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| P5F89_RS24870 () | 4521932..4523290 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| P5F89_RS24875 () | 4523280..4523342 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| P5F89_RS24880 () | 4523503..4524486 | - | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| P5F89_RS24885 () | 4524532..4525356 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| P5F89_RS24890 () | 4525439..4525693 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| P5F89_RS24900 () | 4526446..4526718 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|