MGE detailed information
MGE type: Prophage MGE length: 65973 bp
Accession: NZ_CP121223 Location: 3810395..3876367 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Accession: NZ_CP121223 Location: 3810395..3876367 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5F89_RS20910 () | 3806226..3807767 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| P5F89_RS20915 () | 3807811..3808317 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| P5F89_RS20920 () | 3808436..3809401 | + | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| P5F89_RS20925 () | 3809376..3810104 | - | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| P5F89_RS20930 () | 3810395..3811033 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| P5F89_RS20935 () | 3811051..3811632 | - | 582 | Protein_3668 | alpha/beta hydrolase | - |
| P5F89_RS20940 () | 3811861..3813057 | + | 1197 | WP_005084161.1 | IS110 family transposase ISEc20 | Transposase |
| P5F89_RS20945 () | 3813074..3813433 | - | 360 | Protein_3670 | alpha/beta hydrolase | - |
| P5F89_RS20950 () | 3813433..3814353 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| P5F89_RS20955 () | 3814491..3814925 | + | 435 | Protein_3672 | HTH-type transcriptional regulator PgrR | VF |
| P5F89_RS20965 () | 3816230..3816640 | + | 411 | Protein_3674 | YdaU family protein | - |
| P5F89_RS20975 () | 3818406..3818575 | + | 170 | Protein_3676 | hypothetical protein | - |
| P5F89_RS20980 () | 3818721..3819467 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| P5F89_RS20985 () | 3819482..3819904 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| P5F89_RS20990 () | 3819962..3820318 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| P5F89_RS20995 () | 3820411..3820629 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| P5F89_RS21000 () | 3820631..3820996 | + | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| P5F89_RS21005 () | 3820993..3821658 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| P5F89_RS21010 () | 3821658..3822023 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 3822408..3822466 | - | 59 | - | - | Antitoxin Detail |
| P5F89_RS21015 () | 3822478..3822633 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| P5F89_RS21025 () | 3823970..3824569 | + | 600 | WP_094107379.1 | DUF1367 family protein | - |
| P5F89_RS21030 () | 3824569..3824859 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| P5F89_RS21035 () | 3824856..3825410 | + | 555 | WP_289228590.1 | DUF1133 family protein | - |
| P5F89_RS21040 () | 3825563..3825736 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| P5F89_RS21045 () | 3825798..3826937 | + | 1140 | WP_000088354.1 | IS3 family transposase ISSd1 | Transposase |
| P5F89_RS21050 () | 3826930..3827490 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| P5F89_RS21075 () | 3828124..3829728 | + | 1605 | WP_000615491.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| P5F89_RS21080 () | 3830550..3831718 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| P5F89_RS21085 () | 3832118..3832270 | + | 153 | Protein_3694 | Rha family transcriptional regulator | - |
| P5F89_RS21090 () | 3832329..3833026 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| P5F89_RS21095 () | 3833042..3833947 | + | 906 | Protein_3696 | IS3 family transposase IS600 | Transposase |
| P5F89_RS21100 () | 3833975..3834343 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| P5F89_RS21105 () | 3834367..3834911 | + | 545 | Protein_3698 | tail fiber assembly protein | - |
| P5F89_RS21110 () | 3834935..3836203 | + | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| P5F89_RS21115 () | 3836154..3836777 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| P5F89_RS21120 () | 3836978..3837835 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| P5F89_RS21125 () | 3837832..3838689 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| P5F89_RS21130 () | 3838686..3839513 | - | 828 | WP_000983722.1 | Manganese transport system ATP-binding protein MntB | VF |
| P5F89_RS21135 () | 3839513..3840427 | - | 915 | WP_000555620.1 | putative periplasmic iron-binding protein | VF |
| P5F89_RS21140 () | 3840859..3841500 | - | 642 | Protein_3705 | Putative defective protein IntQ ; Integrase | Integrase |
| P5F89_RS21145 () | 3841554..3842251 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| P5F89_RS21150 () | 3842268..3842438 | - | 171 | Protein_3707 | DUF3596 domain-containing protein | - |
| P5F89_RS21155 () | 3842440..3842607 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| P5F89_RS21160 () | 3842655..3843864 | - | 1210 | Protein_3709 | IS3 family transposase IS629 | Transposase |
| P5F89_RS21165 () | 3843939..3845036 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| P5F89_RS21170 () | 3845042..3845302 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| P5F89_RS21175 () | 3845401..3846557 | + | 1157 | Protein_3712 | IS3 family transposase IS600 | Transposase |
| P5F89_RS21180 () | 3846614..3848029 | - | 1416 | Protein_3713 | exodeoxyribonuclease VIII | - |
| P5F89_RS21185 () | 3848129..3848404 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| P5F89_RS21190 () | 3848479..3848649 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| P5F89_RS21195 () | 3848649..3848870 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| P5F89_RS21205 () | 3850217..3851105 | - | 889 | Protein_3718 | Rha family transcriptional regulator | - |
| P5F89_RS21210 () | 3852329..3852709 | + | 381 | Protein_3719 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS21215 () | 3852711..3852878 | + | 168 | Protein_3720 | IS66 family transposase ISSfl3 | Transposase |
| P5F89_RS21220 () | 3852829..3853452 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| P5F89_RS21225 () | 3853632..3855347 | - | 1716 | WP_128568580.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| P5F89_RS21230 () | 3855889..3856586 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| P5F89_RS21235 () | 3856866..3857312 | + | 447 | Protein_3724 | metallophosphoesterase | - |
| P5F89_RS21240 () | 3857377..3858533 | + | 1157 | WP_094085510.1 | IS3 family transposase IS600 | Transposase |
| P5F89_RS21245 () | 3858577..3858765 | + | 189 | Protein_3726 | serine/threonine-protein phosphatase | - |
| P5F89_RS21250 () | 3858790..3858981 | - | 192 | WP_005049838.1 | YebW family protein | - |
| P5F89_RS21255 () | 3859086..3859322 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P5F89_RS21260 () | 3859440..3860879 | - | 1440 | Protein_3729 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P5F89_RS21265 () | 3860959..3863579 | - | 2621 | Protein_3730 | Intermembrane transport protein YebT | VF |
| P5F89_RS21270 () | 3863548..3864831 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| P5F89_RS21275 () | 3864961..3865458 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| P5F89_RS21280 () | 3865555..3866253 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| P5F89_RS21285 () | 3866273..3868321 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| P5F89_RS21290 () | 3868513..3869394 | + | 882 | WP_000984517.1 | protease HtpX | - |
| P5F89_RS21295 () | 3869440..3870813 | - | 1374 | WP_069101217.1 | MFS transporter | - |
| P5F89_RS21300 () | 3870990..3871781 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| P5F89_RS21305 () | 3871924..3872163 | - | 240 | WP_001211010.1 | YobH family protein | - |
| P5F89_RS21310 () | 3872322..3872465 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| P5F89_RS21315 () | 3872540..3872827 | + | 288 | WP_001006860.1 | YebO family protein | - |
| P5F89_RS21320 () | 3873498..3873641 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| P5F89_RS21325 () | 3873654..3873863 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| P5F89_RS21330 () | 3874029..3874838 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| P5F89_RS21335 () | 3874835..3875401 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| P5F89_RS21345 () | 3876590..3877066 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| P5F89_RS21350 () | 3877121..3877972 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| P5F89_RS21355 () | 3877985..3878785 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| P5F89_RS21360 () | 3878848..3879819 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| P5F89_RS21365 () | 3880136..3880294 | + | 159 | WP_001327808.1 | protein YoaL | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|