MGE detailed information
MGE type: Genomic_island MGE length: 50079 bp
Accession: NZ_CP121223 Location: 3459404..3509482 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Accession: NZ_CP121223 Location: 3459404..3509482 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5F89_RS19035 (3455399) | 3455399..3456187 | + | 789 | WP_005047400.1 | phosphate starvation-inducible protein PhoH | - |
| P5F89_RS19045 (3457526) | 3457526..3458054 | + | 529 | Protein_3293 | ACP S-malonyltransferase | - |
| P5F89_RS19050 (3458051) | 3458051..3459037 | + | 987 | WP_000611853.1 | protein YcdU | - |
| P5F89_RS19055 (3459404) | 3459404..3460621 | + | 1218 | WP_000279879.1 | Prophage integrase IntA ; Integrase | Integrase |
| P5F89_RS19060 (3460791) | 3460791..3462320 | - | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| P5F89_RS19065 (3462292) | 3462292..3462579 | - | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| P5F89_RS19070 (3462680) | 3462680..3464515 | + | 1836 | WP_001258873.1 | hypothetical protein | - |
| P5F89_RS19075 (3465890) | 3465890..3466453 | + | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| P5F89_RS19080 (3466560) | 3466560..3466906 | + | 347 | Protein_3300 | DEAD/DEAH box helicase | - |
| P5F89_RS19085 (3466970) | 3466970..3467532 | + | 563 | Protein_3301 | inovirus Gp2 family protein | - |
| P5F89_RS19090 (3467560) | 3467560..3467901 | + | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| P5F89_RS19095 (3467941) | 3467941..3468420 | - | 480 | Protein_3303 | IS3 family transposase IS629 | Transposase |
| P5F89_RS19100 (3468504) | 3468504..3470012 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| P5F89_RS19105 (3470685) | 3470685..3471424 | - | 740 | Protein_3305 | IS3 family transposase IS629 | Transposase |
| P5F89_RS19110 (3471527) | 3471527..3471892 | + | 366 | Protein_3306 | IS21 family transposase IS100kyp | Transposase |
| P5F89_RS19115 (3471943) | 3471943..3472161 | - | 219 | WP_000145481.1 | TetR/AcrR family transcriptional regulator | - |
| P5F89_RS19120 (3472228) | 3472228..3473390 | + | 1163 | WP_085949416.1 | IS3 family transposase IS3 | Transposase |
| P5F89_RS19125 (3473670) | 3473670..3474947 | - | 1278 | WP_000625669.1 | DUF2254 domain-containing protein | - |
| P5F89_RS19130 (3475010) | 3475010..3477007 | - | 1998 | WP_001293435.1 | choline BCCT transporter BetT | - |
| P5F89_RS19135 (3477161) | 3477161..3478300 | - | 1140 | WP_000088357.1 | IS3 family transposase ISSd1 | Transposase |
| P5F89_RS19140 (3478481) | 3478481..3479425 | - | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| P5F89_RS19145 (3479490) | 3479490..3480440 | - | 951 | WP_005086346.1 | virulence factor VirK | - |
| P5F89_RS19150 (3480445) | 3480445..3480933 | - | 489 | Protein_3314 | putative hexosyltransferase CapU | - |
| P5F89_RS19160 (3481705) | 3481705..3481926 | + | 222 | Protein_3316 | LuxR C-terminal-related transcriptional regulator | - |
| P5F89_RS19165 (3481931) | 3481931..3482320 | + | 390 | WP_000833291.1 | Curli production assembly/transport component CsgE | VF |
| P5F89_RS19170 (3482345) | 3482345..3482761 | + | 417 | WP_001264088.1 | Curli production assembly/transport component CsgF | VF |
| P5F89_RS19175 (3482788) | 3482788..3483563 | + | 776 | Protein_3319 | CsgG/HfaB family protein | - |
| P5F89_RS19180 (3483627) | 3483627..3484118 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| P5F89_RS19185 (3484220) | 3484220..3484774 | - | 555 | WP_001001915.1 | molecular chaperone YcdY | - |
| P5F89_RS19190 (3484798) | 3484798..3485535 | - | 738 | WP_000283673.1 | zinc-binding phosphatase | - |
| P5F89_RS19195 (3485590) | 3485590..3486528 | - | 939 | Protein_3323 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| P5F89_RS19205 (3487000) | 3487000..3487281 | - | 282 | Protein_3324 | DUF4942 domain-containing protein | - |
| P5F89_RS19210 (3487563) | 3487563..3488567 | - | 1005 | WP_001179707.1 | IS110 family transposase ISSfl8 | Transposase |
| P5F89_RS19215 (3488639) | 3488639..3489199 | - | 561 | Protein_3326 | DUF4942 domain-containing protein | - |
| P5F89_RS19220 (3489284) | 3489284..3489481 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| P5F89_RS19225 (3489493) | 3489493..3489984 | - | 492 | WP_000976828.1 | DUF5983 family protein | - |
| P5F89_RS19230 (3489981) | 3489981..3490355 | - | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| P5F89_RS19235 (3490402) | 3490402..3490776 | - | 375 | WP_001280958.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| P5F89_RS19240 (3490939) | 3490939..3491160 | - | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| P5F89_RS19245 (3491223) | 3491223..3491699 | - | 477 | WP_005011624.1 | RadC family protein | - |
| P5F89_RS19250 (3491715) | 3491715..3492188 | - | 474 | WP_005011597.1 | antirestriction protein | - |
| P5F89_RS19255 (3492530) | 3492530..3493351 | - | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| P5F89_RS19260 (3493451) | 3493451..3493624 | - | 174 | WP_000088744.1 | DUF905 family protein | - |
| P5F89_RS19265 (3493744) | 3493744..3494007 | - | 264 | WP_000466628.1 | DNA polymerase III subunit gamma/tau | - |
| P5F89_RS19275 (3494976) | 3494976..3495362 | - | 387 | Protein_3338 | Transposon Tn10 TetD protein | VF |
| P5F89_RS19280 (3495450) | 3495450..3496043 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| P5F89_RS19285 (3496156) | 3496156..3497361 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| P5F89_RS19290 (3497443) | 3497443..3498066 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| P5F89_RS19295 (3498044) | 3498044..3498433 | - | 390 | Protein_3342 | transcriptional regulator | - |
| P5F89_RS19305 (3499235) | 3499235..3500073 | - | 839 | Protein_3344 | Streptomycin 3''-adenylyltransferase | ARG |
| P5F89_RS19310 (3500186) | 3500186..3501016 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| P5F89_RS19315 (3501226) | 3501226..3502239 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| P5F89_RS19320 (3502442) | 3502442..3502492 | + | 51 | Protein_3347 | transposase | - |
| P5F89_RS19325 (3502592) | 3502592..3502792 | + | 201 | WP_000993264.1 | DUF3330 domain-containing protein | - |
| P5F89_RS19330 (3502918) | 3502918..3503478 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| P5F89_RS19335 (3503481) | 3503481..3506447 | + | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| P5F89_RS19340 (3506514) | 3506514..3506891 | + | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| P5F89_RS19345 (3507092) | 3507092..3507751 | - | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| P5F89_RS19350 (3508030) | 3508030..3508727 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| P5F89_RS19355 (3509027) | 3509027..3509482 | + | 456 | WP_005047380.1 | Minor curlin subunit | VF |
| P5F89_RS19360 (3509523) | 3509523..3509630 | + | 108 | Protein_3355 | curlin | - |
| P5F89_RS19365 (3509696) | 3509696..3510704 | + | 1009 | Protein_3356 | IS3 family transposase | - |
| P5F89_RS19370 (3510731) | 3510731..3511096 | + | 366 | WP_001144017.1 | curli major subunit CsgA | - |
| P5F89_RS19375 (3511155) | 3511155..3511311 | + | 157 | Protein_3358 | curli assembly chaperone CsgC | - |
| P5F89_RS19385 (3512548) | 3512548..3512739 | + | 192 | Protein_3360 | curli assembly chaperone CsgC | - |
| P5F89_RS19390 (3512860) | 3512860..3513171 | + | 312 | WP_000489563.1 | protein YmdA | - |
| P5F89_RS19395 (3513266) | 3513266..3513799 | + | 534 | WP_000857408.1 | O-acetyl-ADP-ribose deacetylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|