MGE detailed information
MGE type: Prophage MGE length: 35341 bp
Accession: NZ_CP120396 Location: 2721156..2756496 Organism: Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CO_04 Replicon: chromosome
Accession: NZ_CP120396 Location: 2721156..2756496 Organism: Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CO_04 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVA80_RS13450 (PVA80_13450) | 2716315..2717754 | + | 1440 | WP_010989184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PVA80_RS13455 (PVA80_13455) | 2717871..2718107 | + | 237 | WP_024131167.1 | YebV family protein | - |
| PVA80_RS13460 (PVA80_13460) | 2718218..2718409 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| PVA80_RS13465 (PVA80_13465) | 2718428..2719078 | - | 651 | WP_000986169.1 | protein-serine/threonine phosphatase | - |
| PVA80_RS13470 (PVA80_13470) | 2719302..2719466 | - | 165 | WP_001134857.1 | hypothetical protein | - |
| PVA80_RS13475 (PVA80_13475) | 2719751..2720472 | - | 722 | Protein_2637 | SPI-1 type III secretion system guanine nucleotide exchange factor SopE2 | - |
| PVA80_RS13480 (PVA80_13480) | 2721156..2721551 | + | 396 | WP_000422884.1 | DUF1398 domain-containing protein | - |
| PVA80_RS13485 (PVA80_13485) | 2721880..2722356 | + | 477 | WP_000030950.1 | hypothetical protein | - |
| PVA80_RS13490 (PVA80_13490) | 2722744..2723163 | - | 420 | WP_000354403.1 | GNAT family N-acetyltransferase | - |
| PVA80_RS13495 (PVA80_13495) | 2723534..2723800 | + | 267 | WP_010989185.1 | hypothetical protein | - |
| PVA80_RS13500 (PVA80_13500) | 2723969..2724109 | + | 141 | WP_031624337.1 | hypothetical protein | - |
| PVA80_RS13505 (PVA80_13505) | 2724085..2725355 | - | 1271 | Protein_2643 | IS256 family transposase ISEc39 | Transposase |
| PVA80_RS13510 (PVA80_13510) | 2725425..2725846 | + | 422 | Protein_2644 | tyrosine-type recombinase/integrase | - |
| PVA80_RS13515 (PVA80_13515) | 2727145..2728059 | + | 915 | WP_001233444.1 | DMT family transporter | - |
| PVA80_RS13520 (PVA80_13520) | 2728192..2728350 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PVA80_RS13525 (PVA80_13525) | 2728360..2728974 | + | 615 | WP_000848063.1 | disulfide bond formation protein B | - |
| PVA80_RS13530 (PVA80_13530) | 2729383..2731362 | - | 1980 | WP_001237518.1 | alkyl sulfatase dimerization domain-containing protein | - |
| PVA80_RS13535 (PVA80_13535) | 2731758..2732888 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PVA80_RS13540 (PVA80_13540) | 2733174..2733569 | - | 396 | Protein_2650 | DUF977 family protein | - |
| PVA80_RS13545 (PVA80_13545) | 2733582..2733692 | - | 111 | Protein_2651 | replication protein | - |
| PVA80_RS13550 (PVA80_13550) | 2733693..2734054 | + | 362 | Protein_2652 | recombinase RecT | - |
| PVA80_RS13555 (PVA80_13555) | 2734053..2734361 | + | 309 | Protein_2653 | hypothetical protein ; Integrase | Integrase |
| - | 2734480..2734623 | + | 144 | - | - | Antitoxin Detail |
| - | 2734482..2734584 | - | 103 | - | - | Toxin Detail |
| PVA80_RS13560 (PVA80_13560) | 2734725..2735078 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PVA80_RS13565 (PVA80_13565) | 2735095..2735970 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PVA80_RS13570 (PVA80_13570) | 2735971..2736345 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PVA80_RS13575 (PVA80_13575) | 2736483..2736713 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PVA80_RS13580 (PVA80_13580) | 2736821..2737477 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PVA80_RS13585 (PVA80_13585) | 2737501..2738199 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PVA80_RS13590 (PVA80_13590) | 2738236..2740287 | - | 2052 | WP_000936997.1 | oligopeptidase B | - |
| PVA80_RS13595 (PVA80_13595) | 2740501..2741160 | - | 660 | WP_000024713.1 | tellurite resistance TerB family protein | - |
| PVA80_RS13600 (PVA80_13600) | 2741254..2741607 | - | 354 | WP_001042123.1 | protein YebF | - |
| PVA80_RS13605 (PVA80_13605) | 2741675..2741965 | - | 291 | WP_000257728.1 | DNA damage-inducible protein YebG | - |
| PVA80_RS13610 (PVA80_13610) | 2742096..2743274 | + | 1179 | WP_000173426.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PVA80_RS13615 (PVA80_13615) | 2743374..2744015 | - | 642 | WP_000800493.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PVA80_RS13620 (PVA80_13620) | 2744053..2745864 | - | 1812 | WP_001069124.1 | phosphogluconate dehydratase | - |
| PVA80_RS13625 (PVA80_13625) | 2746099..2747574 | - | 1476 | WP_000301712.1 | glucose-6-phosphate dehydrogenase | - |
| PVA80_RS13630 (PVA80_13630) | 2747916..2748785 | + | 870 | WP_001056719.1 | MurR/RpiR family transcriptional regulator | - |
| PVA80_RS13635 (PVA80_13635) | 2748909..2750351 | + | 1443 | WP_000091158.1 | pyruvate kinase | - |
| PVA80_RS13640 (PVA80_13640) | 2750424..2751395 | - | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PVA80_RS13645 (PVA80_13645) | 2751512..2752831 | - | 1320 | WP_001184019.1 | murein DD-endopeptidase MepM | - |
| PVA80_RS13650 (PVA80_13650) | 2752847..2753791 | - | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PVA80_RS13655 (PVA80_13655) | 2753870..2754625 | + | 756 | WP_000203015.1 | Zinc import ATP-binding protein ZnuC | VF |
| PVA80_RS13660 (PVA80_13660) | 2754622..2755407 | + | 786 | WP_000571518.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PVA80_RS13665 (PVA80_13665) | 2755486..2756496 | - | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| PVA80_RS13670 (PVA80_13670) | 2756505..2757116 | - | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PVA80_RS13675 (PVA80_13675) | 2757476..2758168 | - | 693 | WP_000227314.1 | hypothetical protein | - |
| PVA80_RS13680 (PVA80_13680) | 2758378..2758977 | + | 600 | WP_000716741.1 | YebB family permuted papain-like enzyme | - |
| PVA80_RS13685 (PVA80_13685) | 2758979..2759500 | - | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PVA80_RS13690 (PVA80_13690) | 2759537..2760277 | - | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PVA80_RS13695 (PVA80_13695) | 2760307..2760759 | - | 453 | WP_000653696.1 | dihydroneopterin triphosphate diphosphatase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|