Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2734480..2734623 | Replicon | chromosome |
| Accession | NZ_CP120396 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhi strain 1521-2017_CO_04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2734482..2734584 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2734480..2734623 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVA80_RS13535 (PVA80_13535) | 2731758..2732888 | + | 1131 | WP_000529513.1 | GGDEF domain-containing protein | - |
| PVA80_RS13540 (PVA80_13540) | 2733174..2733569 | - | 396 | Protein_2650 | DUF977 family protein | - |
| PVA80_RS13545 (PVA80_13545) | 2733582..2733692 | - | 111 | Protein_2651 | replication protein | - |
| PVA80_RS13550 (PVA80_13550) | 2733693..2734054 | + | 362 | Protein_2652 | recombinase RecT | - |
| PVA80_RS13555 (PVA80_13555) | 2734053..2734361 | + | 309 | Protein_2653 | tyrosine-type recombinase/integrase | - |
| - | 2734480..2734623 | + | 144 | - | - | Antitoxin |
| - | 2734482..2734584 | - | 103 | - | - | Toxin |
| PVA80_RS13560 (PVA80_13560) | 2734725..2735078 | - | 354 | WP_000722366.1 | YebY family protein | - |
| PVA80_RS13565 (PVA80_13565) | 2735095..2735970 | - | 876 | WP_000979693.1 | copper homeostasis membrane protein CopD | - |
| PVA80_RS13570 (PVA80_13570) | 2735971..2736345 | - | 375 | WP_001681742.1 | CopC domain-containing protein YobA | - |
| PVA80_RS13575 (PVA80_13575) | 2736483..2736713 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PVA80_RS13580 (PVA80_13580) | 2736821..2737477 | + | 657 | WP_000100250.1 | carbon-nitrogen hydrolase family protein | - |
| PVA80_RS13585 (PVA80_13585) | 2737501..2738199 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2721156..2756496 | 35340 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275010 NZ_CP120396:c2734584-2734482 [Salmonella enterica subsp. enterica serovar Typhi]
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT275010 NZ_CP120396:2734480-2734623 [Salmonella enterica subsp. enterica serovar Typhi]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
