MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 95921 bp
Accession: NZ_CP119581 Location: 1..95921 Organism: Escherichia coli strain C012_chr Replicon: plasmid pEC012-4
Accession: NZ_CP119581 Location: 1..95921 Organism: Escherichia coli strain C012_chr Replicon: plasmid pEC012-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1J04_RS25620 (P1J04_25620) | 1..1920 | + | 1920 | WP_029401677.1 | hypothetical protein | - |
| P1J04_RS25625 (P1J04_25625) | 1917..2282 | + | 366 | WP_029401678.1 | hypothetical protein | - |
| P1J04_RS25630 (P1J04_25630) | 2295..5282 | + | 2988 | WP_029401679.1 | hypothetical protein | - |
| P1J04_RS25635 (P1J04_25635) | 5272..5583 | + | 312 | WP_001165932.1 | hypothetical protein | - |
| P1J04_RS25640 (P1J04_25640) | 6326..7438 | + | 1113 | WP_000724558.1 | porin OmpC | - |
| P1J04_RS25645 (P1J04_25645) | 7672..8160 | - | 489 | WP_000068862.1 | single-stranded DNA-binding protein | - |
| P1J04_RS25650 (P1J04_25650) | 8330..8887 | + | 558 | WP_001345478.1 | lysozyme | - |
| P1J04_RS25655 (P1J04_25655) | 9179..10198 | - | 1020 | WP_000132937.1 | head processing protein | - |
| P1J04_RS25660 (P1J04_25660) | 10191..11900 | - | 1710 | WP_024200402.1 | hypothetical protein | - |
| P1J04_RS25665 (P1J04_25665) | 11976..18743 | + | 6768 | WP_047629450.1 | N-6 DNA methylase | - |
| P1J04_RS25670 (P1J04_25670) | 18777..19217 | + | 441 | WP_000224043.1 | hypothetical protein | - |
| P1J04_RS25675 (P1J04_25675) | 19214..19462 | + | 249 | WP_000747846.1 | hypothetical protein | - |
| P1J04_RS25680 (P1J04_25680) | 19499..20626 | - | 1128 | WP_000526244.1 | RelA/SpoT domain-containing protein | - |
| P1J04_RS25685 (P1J04_25685) | 20729..21370 | - | 642 | WP_023351534.1 | hypothetical protein | - |
| P1J04_RS25690 (P1J04_25690) | 21560..21700 | - | 141 | Protein_14 | Ref family recombination enhancement nuclease | - |
| P1J04_RS25695 (P1J04_25695) | 21733..23031 | - | 1299 | Protein_15 | Tn3 family transposase TnpA_Tn3 | Transposase |
| P1J04_RS25700 (P1J04_25700) | 23099..23804 | + | 706 | Protein_16 | IS6-like element IS26 family transposase | - |
| P1J04_RS25705 (P1J04_25705) | 23857..24654 | - | 798 | Protein_17 | IS91 family transposase ISAzo26 | Transposase |
| P1J04_RS25710 (P1J04_25710) | 24803..25641 | + | 839 | Protein_18 | Streptomycin 3''-adenylyltransferase | ARG |
| P1J04_RS25715 (P1J04_25715) | 25726..26547 | + | 822 | WP_000939727.1 | hypothetical protein | ARG |
| P1J04_RS25720 (P1J04_25720) | 26700..27404 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| P1J04_RS25725 (P1J04_25725) | 27457..28131 | - | 675 | Protein_21 | IS4 family transposase IS10R | Transposase |
| P1J04_RS25730 (P1J04_25730) | 28274..29134 | + | 861 | WP_000557454.1 | SPbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| P1J04_RS25735 (P1J04_25735) | 29147..29602 | + | 456 | Protein_23 | AAA family ATPase | - |
| P1J04_RS25740 (P1J04_25740) | 29668..30372 | + | 705 | WP_276131596.1 | IS6 family transposase IS15DI | Transposase |
| P1J04_RS25745 (P1J04_25745) | 30653..31210 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| P1J04_RS25750 (P1J04_25750) | 31393..32253 | + | 861 | WP_094320566.1 | Beta-lactamase TEM | ARG |
| P1J04_RS25755 (P1J04_25755) | 32401..32826 | - | 426 | Protein_27 | Ref family recombination enhancement nuclease | - |
| P1J04_RS25760 (P1J04_25760) | 33074..33385 | - | 312 | WP_063080289.1 | hypothetical protein | - |
| P1J04_RS25765 (P1J04_25765) | 33436..34467 | - | 1032 | WP_000067536.1 | site-specific integrase | - |
| P1J04_RS25770 (P1J04_25770) | 34475..34696 | - | 222 | WP_063080290.1 | hypothetical protein | - |
| P1J04_RS25775 (P1J04_25775) | 35301..35510 | + | 210 | WP_032305379.1 | hypothetical protein | - |
| P1J04_RS25780 (P1J04_25780) | 35621..36472 | + | 852 | WP_029401409.1 | phage repressor protein C1 | - |
| P1J04_RS25785 (P1J04_25785) | 36497..37981 | - | 1485 | WP_000124150.1 | terminase | - |
| P1J04_RS25790 (P1J04_25790) | 37981..39174 | - | 1194 | WP_000219604.1 | terminase | - |
| P1J04_RS25795 (P1J04_25795) | 39261..39713 | - | 453 | WP_032305380.1 | hypothetical protein | - |
| P1J04_RS25800 (P1J04_25800) | 39802..40845 | - | 1044 | WP_000648833.1 | DUF968 domain-containing protein | - |
| P1J04_RS25805 (P1J04_25805) | 40873..41052 | - | 180 | WP_000113018.1 | hypothetical protein | - |
| P1J04_RS25810 (P1J04_25810) | 41057..41437 | - | 381 | WP_001216030.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| P1J04_RS25815 (P1J04_25815) | 41437..41658 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| P1J04_RS25820 (P1J04_25820) | 41841..43397 | + | 1557 | WP_029401414.1 | type I restriction-modification system subunit M | - |
| P1J04_RS25825 (P1J04_25825) | 43394..44662 | + | 1269 | WP_029401415.1 | restriction endonuclease subunit S | - |
| P1J04_RS25830 (P1J04_25830) | 44784..47900 | + | 3117 | WP_029401417.1 | HsdR family type I site-specific deoxyribonuclease | - |
| P1J04_RS25835 (P1J04_25835) | 48165..48671 | - | 507 | WP_029401419.1 | hypothetical protein | - |
| P1J04_RS25840 (P1J04_25840) | 48744..50006 | - | 1263 | WP_029401421.1 | hypothetical protein | - |
| P1J04_RS25845 (P1J04_25845) | 50308..51009 | - | 702 | WP_000684869.1 | hypothetical protein | - |
| P1J04_RS25850 (P1J04_25850) | 51006..51683 | - | 678 | WP_024262884.1 | metallophosphoesterase | - |
| P1J04_RS25855 (P1J04_25855) | 51680..52306 | - | 627 | WP_000484111.1 | hypothetical protein | - |
| P1J04_RS25860 (P1J04_25860) | 52808..52963 | - | 156 | WP_000096174.1 | hypothetical protein | - |
| P1J04_RS25865 (P1J04_25865) | 53030..53608 | - | 579 | WP_000943607.1 | VRR-NUC domain-containing protein | - |
| P1J04_RS25870 (P1J04_25870) | 53611..53856 | - | 246 | WP_000840931.1 | hypothetical protein | - |
| P1J04_RS25875 (P1J04_25875) | 54003..54380 | + | 378 | WP_086722067.1 | hypothetical protein | - |
| P1J04_RS25880 (P1J04_25880) | 54390..55607 | + | 1218 | WP_001141915.1 | hypothetical protein | - |
| P1J04_RS25885 (P1J04_25885) | 55611..56339 | + | 729 | WP_000896806.1 | hypothetical protein | - |
| P1J04_RS25890 (P1J04_25890) | 56326..57111 | + | 786 | WP_015974270.1 | hypothetical protein | - |
| P1J04_RS25895 (P1J04_25895) | 57113..58129 | + | 1017 | WP_015974269.1 | hypothetical protein | - |
| P1J04_RS25900 (P1J04_25900) | 58122..58754 | + | 633 | WP_000535202.1 | baseplate protein | - |
| P1J04_RS25905 (P1J04_25905) | 58801..59799 | - | 999 | WP_015974268.1 | hypothetical protein | - |
| P1J04_RS25910 (P1J04_25910) | 59799..61163 | - | 1365 | WP_001276603.1 | replicative DNA helicase | - |
| P1J04_RS25920 (P1J04_25920) | 61636..61800 | - | 165 | WP_000234831.1 | DUF3927 family protein | - |
| P1J04_RS25925 (P1J04_25925) | 61800..62225 | - | 426 | WP_000900640.1 | tellurite/colicin resistance protein | - |
| P1J04_RS25940 (P1J04_25940) | 63467..63724 | + | 258 | WP_162751176.1 | hypothetical protein | - |
| P1J04_RS25945 (P1J04_25945) | 63783..66047 | - | 2265 | WP_096321058.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| P1J04_RS25950 (P1J04_25950) | 66044..66949 | - | 906 | WP_015974264.1 | recombination-associated protein RdgC | - |
| P1J04_RS25955 (P1J04_25955) | 66942..67226 | - | 285 | WP_001177860.1 | hypothetical protein | - |
| P1J04_RS25960 (P1J04_25960) | 67689..68477 | + | 789 | WP_001569402.1 | hypothetical protein | - |
| P1J04_RS25965 (P1J04_25965) | 68517..68939 | + | 423 | WP_000007765.1 | hypothetical protein | - |
| P1J04_RS25970 (P1J04_25970) | 69117..69506 | + | 390 | WP_086722065.1 | hypothetical protein | - |
| P1J04_RS25975 (P1J04_25975) | 69825..70685 | + | 861 | WP_001076427.1 | replication protein RepA | - |
| P1J04_RS25980 (P1J04_25980) | 71085..72290 | + | 1206 | WP_000817632.1 | Plasmid partition protein A | VF |
| P1J04_RS25985 (P1J04_25985) | 72287..73252 | + | 966 | WP_000725191.1 | ParB family protein | - |
| P1J04_RS25990 (P1J04_25990) | 73519..75225 | + | 1707 | WP_000067710.1 | hypothetical protein | - |
| P1J04_RS25995 (P1J04_25995) | 75286..76875 | + | 1590 | WP_023156142.1 | hypothetical protein | - |
| P1J04_RS26000 (P1J04_26000) | 76885..77700 | + | 816 | WP_029401366.1 | hypothetical protein | - |
| P1J04_RS26005 (P1J04_26005) | 77859..78317 | + | 459 | WP_223689991.1 | hypothetical protein | - |
| P1J04_RS26010 (P1J04_26010) | 78329..78838 | + | 510 | WP_000509939.1 | hypothetical protein | - |
| P1J04_RS26015 (P1J04_26015) | 78955..79110 | - | 156 | WP_001313475.1 | type I toxin-antitoxin system toxin HokD | - |
| P1J04_RS26020 (P1J04_26020) | 79292..79537 | - | 246 | WP_029401368.1 | hypothetical protein | - |
| P1J04_RS26025 (P1J04_26025) | 79588..80433 | - | 846 | WP_001379176.1 | helix-turn-helix domain-containing protein | - |
| P1J04_RS26030 (P1J04_26030) | 80463..81263 | - | 801 | WP_001187876.1 | phage antirepressor KilAC domain-containing protein | - |
| P1J04_RS26035 (P1J04_26035) | 81427..82470 | - | 1044 | WP_000743164.1 | phage antirepressor Ant | - |
| P1J04_RS26040 (P1J04_26040) | 82467..82688 | - | 222 | WP_071588786.1 | host cell division inhibitor Icd-like protein | - |
| P1J04_RS26045 (P1J04_26045) | 83310..83822 | + | 513 | WP_000039791.1 | hypothetical protein | - |
| P1J04_RS26050 (P1J04_26050) | 83826..84365 | + | 540 | WP_001033469.1 | DUF5384 family protein | - |
| P1J04_RS26055 (P1J04_26055) | 84446..85012 | + | 567 | WP_029401369.1 | hypothetical protein | - |
| P1J04_RS26060 (P1J04_26060) | 85023..85634 | + | 612 | WP_000523978.1 | hypothetical protein | - |
| P1J04_RS26065 (P1J04_26065) | 85649..86530 | + | 882 | WP_001702265.1 | hypothetical protein | - |
| P1J04_RS26070 (P1J04_26070) | 86612..90004 | + | 3393 | WP_000440163.1 | lytic transglycosylase domain-containing protein | - |
| P1J04_RS26075 (P1J04_26075) | 90004..90360 | + | 357 | WP_000002800.1 | hypothetical protein | - |
| P1J04_RS26080 (P1J04_26080) | 90357..91790 | + | 1434 | WP_000047923.1 | bleomycin hydrolase | - |
| P1J04_RS26085 (P1J04_26085) | 91790..92626 | + | 837 | WP_029402547.1 | hypothetical protein | - |
| P1J04_RS26090 (P1J04_26090) | 92705..93034 | + | 330 | WP_276131595.1 | phage tail protein | - |
| P1J04_RS26095 (P1J04_26095) | 93071..93775 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| P1J04_RS26100 (P1J04_26100) | 93828..94085 | - | 258 | Protein_93 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| P1J04_RS26105 (P1J04_26105) | 94213..94494 | + | 282 | WP_000332810.1 | phage holin family protein | - |
| P1J04_RS26110 (P1J04_26110) | 94562..94891 | + | 330 | WP_000887652.1 | phage holin family protein | - |
| P1J04_RS26115 (P1J04_26115) | 94888..95331 | + | 444 | WP_000580770.1 | hypothetical protein | - |
| P1J04_RS26120 (P1J04_26120) | 95318..95920 | + | 603 | WP_029401676.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|