MGE detailed information
MGE type: Mobilizable plasmid MGE length: 57709 bp
Accession: NZ_CP119130 Location: 1..57709 Organism: Sphingobium sp. WTD-1 Replicon: plasmid unnamed3
Accession: NZ_CP119130 Location: 1..57709 Organism: Sphingobium sp. WTD-1 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6H05_RS27815 (N6H05_27815) | 140..595 | + | 456 | WP_037474351.1 | hypothetical protein | - |
| N6H05_RS27820 (N6H05_27820) | 668..1378 | - | 711 | WP_231472229.1 | TonB-dependent receptor | - |
| N6H05_RS27825 (N6H05_27825) | 1302..1640 | + | 339 | Protein_2 | IS21 family transposase ISSsp5 | Transposase |
| N6H05_RS27830 (N6H05_27830) | 1713..2867 | + | 1155 | WP_004212916.1 | TonB-dependent receptor | - |
| N6H05_RS27835 (N6H05_27835) | 2867..4567 | + | 1701 | WP_004212915.1 | alkaline phosphatase D family protein | - |
| N6H05_RS27840 (N6H05_27840) | 4560..4829 | - | 270 | WP_004212913.1 | hypothetical protein | - |
| N6H05_RS27845 (N6H05_27845) | 5001..5183 | + | 183 | WP_143058613.1 | hypothetical protein | - |
| N6H05_RS27850 (N6H05_27850) | 5639..6109 | - | 471 | WP_080604449.1 | IS5 family transposase ISPme2 | Transposase |
| N6H05_RS27855 (N6H05_27855) | 6115..6429 | - | 315 | Protein_8 | IS5 family transposase ISPko5 | Transposase |
| N6H05_RS27860 (N6H05_27860) | 6603..8909 | + | 2307 | WP_284114508.1 | TonB-dependent receptor | - |
| N6H05_RS27865 (N6H05_27865) | 8909..10027 | + | 1119 | WP_004212909.1 | glycerophosphodiester phosphodiesterase | - |
| N6H05_RS27870 (N6H05_27870) | 10755..13238 | - | 2484 | WP_004212907.1 | TonB-dependent receptor | - |
| N6H05_RS27875 (N6H05_27875) | 13320..14219 | - | 900 | WP_051156939.1 | DUF4880 domain-containing protein | - |
| N6H05_RS27880 (N6H05_27880) | 14216..14884 | - | 669 | WP_268812446.1 | RNA polymerase sigma factor | - |
| N6H05_RS27885 (N6H05_27885) | 14916..16412 | + | 1497 | WP_037472268.1 | alkaline phosphatase D family protein | - |
| N6H05_RS27890 (N6H05_27890) | 16487..18037 | - | 1551 | WP_080604537.1 | Catalase C | VF |
| N6H05_RS27895 (N6H05_27895) | 17928..18794 | - | 867 | WP_004212898.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| N6H05_RS27900 (N6H05_27900) | 19191..19778 | + | 588 | Protein_17 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| N6H05_RS27910 (N6H05_27910) | 21312..21617 | + | 306 | WP_284114509.1 | GNAT family N-acetyltransferase | - |
| N6H05_RS27915 (N6H05_27915) | 21707..22819 | - | 1113 | WP_062069515.1 | replication initiator protein A | - |
| N6H05_RS27920 (N6H05_27920) | 23553..25229 | - | 1677 | WP_066268898.1 | hypothetical protein | VF |
| N6H05_RS27925 (N6H05_27925) | 25236..25526 | - | 291 | WP_062346066.1 | hypothetical protein | - |
| N6H05_RS27930 (N6H05_27930) | 25523..25747 | - | 225 | WP_066268892.1 | conjugal transfer protein TraD | - |
| N6H05_RS27935 (N6H05_27935) | 25785..26090 | - | 306 | WP_066268908.1 | conjugal transfer protein TraD | - |
| N6H05_RS27940 (N6H05_27940) | 26265..29369 | + | 3105 | WP_066268888.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| N6H05_RS27945 (N6H05_27945) | 29384..30094 | + | 711 | WP_066268885.1 | DUF6118 family protein | - |
| N6H05_RS27950 (N6H05_27950) | 30564..31010 | + | 447 | WP_251652458.1 | Flagellar hook-basal body complex protein FliE | VF |
| N6H05_RS27955 (N6H05_27955) | 31367..31837 | - | 471 | WP_043150629.1 | nuclear transport factor 2 family protein | - |
| N6H05_RS27960 (N6H05_27960) | 32133..32339 | + | 207 | WP_051519908.1 | DUF6118 family protein | - |
| N6H05_RS27965 (N6H05_27965) | 32403..34268 | - | 1866 | WP_082736289.1 | cytochrome c/FTR1 family iron permease | - |
| N6H05_RS27970 (N6H05_27970) | 34577..37264 | - | 2688 | WP_037475977.1 | NAD-dependent epimerase/dehydratase family protein | - |
| N6H05_RS27975 (N6H05_27975) | 37329..38255 | - | 927 | WP_037475979.1 | copper homeostasis membrane protein CopD | - |
| N6H05_RS27980 (N6H05_27980) | 38260..38628 | - | 369 | WP_037475981.1 | copper homeostasis periplasmic binding protein CopC | - |
| N6H05_RS27985 (N6H05_27985) | 38836..39834 | + | 999 | WP_052027673.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| N6H05_RS27990 (N6H05_27990) | 40115..40519 | + | 405 | WP_082736288.1 | four-helix bundle copper-binding protein | - |
| N6H05_RS27995 (N6H05_27995) | 40608..41399 | - | 792 | WP_231725740.1 | hypothetical protein | - |
| N6H05_RS28000 (N6H05_28000) | 41486..41935 | - | 450 | WP_047100380.1 | DUF411 domain-containing protein | - |
| N6H05_RS28005 (N6H05_28005) | 41994..42377 | - | 384 | WP_037472990.1 | DUF305 domain-containing protein | - |
| N6H05_RS28010 (N6H05_28010) | 42426..43700 | - | 1275 | WP_066269059.1 | hypothetical protein | VF |
| N6H05_RS28015 (N6H05_28015) | 43690..45705 | - | 2016 | WP_066269052.1 | copper resistance system multicopper oxidase | - |
| N6H05_RS28020 (N6H05_28020) | 45794..46366 | - | 573 | WP_066269048.1 | RNA polymerase sigma factor | - |
| N6H05_RS28025 (N6H05_28025) | 46363..46782 | - | 420 | WP_037473048.1 | periplasmic heavy metal sensor | - |
| N6H05_RS28030 (N6H05_28030) | 46803..47087 | - | 285 | WP_004212939.1 | hypothetical protein | - |
| N6H05_RS28035 (N6H05_28035) | 47668..49812 | - | 2145 | WP_066269041.1 | TonB-dependent siderophore receptor | - |
| N6H05_RS28040 (N6H05_28040) | 50107..50472 | + | 366 | WP_004212937.1 | hypothetical protein | - |
| N6H05_RS28045 (N6H05_28045) | 50510..50905 | + | 396 | WP_062069509.1 | hypothetical protein | - |
| N6H05_RS28050 (N6H05_28050) | 50902..51864 | + | 963 | WP_004212934.1 | tyrosine-type recombinase/integrase | - |
| N6H05_RS28055 (N6H05_28055) | 51861..52481 | - | 621 | WP_037492298.1 | histidine phosphatase family protein | - |
| N6H05_RS28060 (N6H05_28060) | 52491..52772 | - | 282 | WP_004212931.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| N6H05_RS28065 (N6H05_28065) | 52759..53025 | - | 267 | WP_004212930.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| N6H05_RS28070 (N6H05_28070) | 53429..54069 | + | 641 | Protein_51 | transcription elongation protein SprT | - |
| N6H05_RS28075 (N6H05_28075) | 54145..54798 | + | 654 | WP_004212927.1 | hypothetical protein | VF |
| N6H05_RS28080 (N6H05_28080) | 54795..55109 | + | 315 | WP_066269038.1 | hypothetical protein | - |
| N6H05_RS28085 (N6H05_28085) | 55782..56078 | - | 297 | WP_257011066.1 | GNAT family N-acetyltransferase | - |
| N6H05_RS28090 (N6H05_28090) | 56107..56706 | - | 600 | WP_004212923.1 | GNAT family N-acetyltransferase | - |
| N6H05_RS28095 (N6H05_28095) | 56703..57377 | - | 675 | WP_080604539.1 | YgjV family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|