MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 124387 bp
Accession: NZ_CP119121 Location: 1..124387 Organism: Escherichia coli strain GENOMIC22-004 Replicon: plasmid pCFSAN126949_01
Accession: NZ_CP119121 Location: 1..124387 Organism: Escherichia coli strain GENOMIC22-004 Replicon: plasmid pCFSAN126949_01
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYZ88_RS23615 (PYZ88_23590) | 438..650 | + | 213 | Protein_0 | plasmid stability protein StbA | - |
| PYZ88_RS23620 (PYZ88_23595) | 717..1499 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| PYZ88_RS23625 (PYZ88_23600) | 1496..2518 | - | 1023 | WP_000255956.1 | IS21 family transposase IS100kyp | Transposase |
| PYZ88_RS23630 (PYZ88_23605) | 2605..3381 | + | 777 | Protein_3 | ParM/StbA family protein | - |
| PYZ88_RS23635 (PYZ88_23610) | 3404..3697 | + | 294 | WP_000919078.1 | hypothetical protein | - |
| PYZ88_RS23640 (PYZ88_23615) | 3699..4118 | + | 420 | WP_000651490.1 | H-NS family nucleoid-associated regulatory protein | - |
| PYZ88_RS23645 (PYZ88_23620) | 4178..4729 | - | 552 | WP_001020646.1 | FlhC family transcriptional regulator | - |
| PYZ88_RS23650 (PYZ88_23625) | 4726..5334 | - | 609 | WP_000891157.1 | hypothetical protein | - |
| PYZ88_RS23655 (PYZ88_23630) | 5345..5878 | - | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| PYZ88_RS23660 (PYZ88_23635) | 5878..6150 | - | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| PYZ88_RS23665 (PYZ88_23640) | 6866..7228 | + | 363 | WP_000683483.1 | hypothetical protein | - |
| PYZ88_RS23670 (PYZ88_23645) | 7266..10880 | - | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PYZ88_RS23675 (PYZ88_23650) | 10893..12326 | - | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| PYZ88_RS23680 (PYZ88_23655) | 12328..13368 | - | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| PYZ88_RS23685 (PYZ88_23660) | 13479..14990 | - | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| PYZ88_RS23690 (PYZ88_23665) | 15277..16317 | - | 1041 | WP_000101568.1 | DNA-binding protein | - |
| PYZ88_RS23695 (PYZ88_23670) | 16470..17345 | - | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| PYZ88_RS23700 (PYZ88_23675) | 17662..18153 | - | 492 | WP_000139717.1 | hypothetical protein | - |
| PYZ88_RS23705 (PYZ88_23680) | 18150..19019 | - | 870 | WP_004201184.1 | 3'-5' exonuclease | - |
| PYZ88_RS23710 (PYZ88_23685) | 19024..20034 | - | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| PYZ88_RS23715 (PYZ88_23690) | 20037..20573 | - | 537 | WP_000949433.1 | hypothetical protein | - |
| PYZ88_RS23720 (PYZ88_23695) | 20872..21153 | - | 282 | WP_000575657.1 | hypothetical protein | - |
| PYZ88_RS23725 (PYZ88_23700) | 21423..22025 | + | 603 | WP_000278322.1 | hypothetical protein | - |
| PYZ88_RS23730 (PYZ88_23705) | 22041..22493 | - | 453 | WP_000791469.1 | hypothetical protein | - |
| PYZ88_RS23735 (PYZ88_23710) | 22664..23086 | - | 423 | WP_001165345.1 | hypothetical protein | - |
| PYZ88_RS23740 (PYZ88_23715) | 23076..25574 | - | 2499 | Protein_25 | tRNA(Glu)-specific nuclease WapA | VF |
| PYZ88_RS23745 (PYZ88_23720) | 25546..26112 | - | 567 | Protein_26 | IS91 family transposase ISPps1 | Transposase |
| PYZ88_RS23750 (PYZ88_23725) | 26337..27977 | - | 1641 | WP_004201176.1 | 60 kDa chaperonin | VF |
| PYZ88_RS23755 (PYZ88_23730) | 28033..28323 | - | 291 | WP_004201172.1 | co-chaperone GroES | - |
| PYZ88_RS23760 (PYZ88_23735) | 28517..28846 | + | 330 | WP_004201171.1 | divalent-cation tolerance protein CutA | - |
| PYZ88_RS23765 (PYZ88_23740) | 28851..29225 | + | 375 | Protein_30 | protein-disulfide reductase DsbD family protein | - |
| PYZ88_RS23770 (PYZ88_23745) | 29325..29882 | + | 558 | Protein_31 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| PYZ88_RS23775 (PYZ88_23750) | 29893..30531 | - | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| PYZ88_RS23780 (PYZ88_23755) | 30536..30901 | - | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| PYZ88_RS23785 (PYZ88_23760) | 30905..31717 | - | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| PYZ88_RS23795 (PYZ88_23770) | 32922..33767 | + | 846 | WP_000855769.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| PYZ88_RS23800 (PYZ88_23775) | 33865..34533 | - | 669 | WP_015058215.1 | endonuclease III | - |
| PYZ88_RS23805 (PYZ88_23780) | 34861..35412 | - | 552 | Protein_38 | DNA cytosine methyltransferase | - |
| PYZ88_RS23810 (PYZ88_23785) | 35745..35915 | + | 171 | WP_016479969.1 | hypothetical protein | - |
| PYZ88_RS23815 (PYZ88_23790) | 36029..36328 | + | 300 | WP_001183923.1 | DUF2293 domain-containing protein | - |
| PYZ88_RS23820 (PYZ88_23795) | 36454..36654 | - | 201 | Protein_41 | hypothetical protein | - |
| PYZ88_RS23825 (PYZ88_23800) | 36781..37620 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| PYZ88_RS23830 (PYZ88_23805) | 37614..37961 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| PYZ88_RS23835 (PYZ88_23810) | 38130..38684 | - | 555 | WP_032488579.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| PYZ88_RS23840 (PYZ88_23815) | 38915..39928 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| PYZ88_RS23845 (PYZ88_23820) | 40234..40791 | + | 558 | WP_001162012.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| PYZ88_RS23850 (PYZ88_23825) | 40794..43766 | + | 2973 | WP_001138073.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| PYZ88_RS23855 (PYZ88_23830) | 43845..44849 | + | 1005 | WP_000427620.1 | IS110 family transposase IS4321 | Transposase |
| PYZ88_RS23860 (PYZ88_23835) | 45031..45252 | - | 222 | WP_000714163.1 | hypothetical protein | - |
| PYZ88_RS23865 (PYZ88_23840) | 45325..45603 | - | 279 | WP_000268337.1 | hypothetical protein | - |
| PYZ88_RS23870 (PYZ88_23845) | 45590..47317 | - | 1728 | WP_000122922.1 | toprim domain-containing protein | - |
| PYZ88_RS23875 (PYZ88_23850) | 47495..47881 | - | 387 | WP_001077336.1 | hypothetical protein | - |
| PYZ88_RS23880 (PYZ88_23855) | 48340..49191 | - | 852 | WP_000595210.1 | hypothetical protein | - |
| PYZ88_RS23885 (PYZ88_23860) | 49266..49823 | - | 558 | WP_000064432.1 | hypothetical protein | - |
| PYZ88_RS23890 (PYZ88_23865) | 49897..50115 | - | 219 | WP_000260293.1 | hypothetical protein | - |
| PYZ88_RS23895 (PYZ88_23870) | 50129..50398 | - | 270 | WP_000184110.1 | hypothetical protein | - |
| PYZ88_RS23900 (PYZ88_23875) | 50391..50996 | - | 606 | WP_000071870.1 | 5'-deoxynucleotidase | - |
| PYZ88_RS23905 (PYZ88_23880) | 51068..51271 | - | 204 | WP_000050847.1 | hypothetical protein | - |
| PYZ88_RS23910 (PYZ88_23885) | 51326..51760 | - | 435 | WP_004200877.1 | hypothetical protein | - |
| PYZ88_RS23915 (PYZ88_23890) | 52025..52360 | - | 336 | WP_001447572.1 | hypothetical protein | - |
| PYZ88_RS23920 (PYZ88_23895) | 52422..54218 | - | 1797 | WP_000039319.1 | VWA domain-containing protein | - |
| PYZ88_RS23925 (PYZ88_23900) | 54303..55580 | - | 1278 | WP_000170087.1 | DUF3150 domain-containing protein | - |
| PYZ88_RS23930 (PYZ88_23905) | 55780..56790 | - | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
| PYZ88_RS23935 (PYZ88_23910) | 56853..57842 | - | 990 | WP_001282585.1 | phage recombination protein Bet | - |
| PYZ88_RS23940 (PYZ88_23915) | 57937..58467 | - | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
| PYZ88_RS23945 (PYZ88_23920) | 58528..59061 | - | 534 | WP_227543304.1 | hypothetical protein | - |
| PYZ88_RS23950 (PYZ88_23925) | 59004..59561 | - | 558 | WP_275289564.1 | TraC family protein | - |
| PYZ88_RS23955 (PYZ88_23930) | 59558..63727 | - | 4170 | WP_275289565.1 | Ig-like domain-containing protein | - |
| PYZ88_RS23960 | 63773..64198 | - | 426 | WP_001447736.1 | hypothetical protein | - |
| PYZ88_RS23965 (PYZ88_23935) | 64455..64772 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| PYZ88_RS23970 (PYZ88_23940) | 64769..65302 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| PYZ88_RS23975 (PYZ88_23945) | 65396..66541 | - | 1146 | WP_015058212.1 | Beta-lactamase | ARG |
| PYZ88_RS23980 (PYZ88_23950) | 66865..68127 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| PYZ88_RS23985 (PYZ88_23955) | 68412..68804 | - | 393 | WP_000479535.1 | TraA family conjugative transfer protein | - |
| PYZ88_RS23990 (PYZ88_23960) | 68808..69386 | - | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PYZ88_RS23995 (PYZ88_23965) | 69383..70696 | - | 1314 | WP_024131605.1 | TraB/VirB10 family protein | - |
| PYZ88_RS24000 (PYZ88_23970) | 70696..71613 | - | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| PYZ88_RS24005 (PYZ88_23975) | 71597..72223 | - | 627 | WP_001049717.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PYZ88_RS24010 (PYZ88_23980) | 72220..72501 | - | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| PYZ88_RS24015 (PYZ88_23985) | 72646..73011 | - | 366 | WP_001052530.1 | hypothetical protein | - |
| PYZ88_RS24020 | 73023..73166 | - | 144 | WP_001275801.1 | hypothetical protein | - |
| PYZ88_RS24025 (PYZ88_23990) | 73347..74009 | - | 663 | WP_001231464.1 | hypothetical protein | - |
| PYZ88_RS24030 (PYZ88_23995) | 74009..74386 | - | 378 | WP_000869297.1 | hypothetical protein | - |
| PYZ88_RS24035 (PYZ88_24000) | 74396..74842 | - | 447 | WP_000122507.1 | hypothetical protein | - |
| PYZ88_RS24040 (PYZ88_24005) | 74852..75481 | - | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| PYZ88_RS24045 (PYZ88_24010) | 75438..75983 | - | 546 | WP_000228720.1 | hypothetical protein | - |
| PYZ88_RS24050 (PYZ88_24015) | 76033..77898 | - | 1866 | WP_000178857.1 | conjugative transfer system coupling protein TraD | - |
| PYZ88_RS24055 (PYZ88_24020) | 77895..80867 | - | 2973 | WP_001326173.1 | hypothetical protein | Relaxase |
| PYZ88_RS24060 (PYZ88_24025) | 81035..81652 | + | 618 | WP_001249395.1 | hypothetical protein | - |
| PYZ88_RS24065 (PYZ88_24030) | 81634..81867 | + | 234 | WP_001191890.1 | hypothetical protein | - |
| PYZ88_RS24070 (PYZ88_24035) | 81867..84059 | + | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| PYZ88_RS24075 (PYZ88_24040) | 84074..84562 | + | 489 | WP_004201072.1 | hypothetical protein | - |
| PYZ88_RS24080 (PYZ88_24045) | 84653..84931 | - | 279 | WP_000746034.1 | hypothetical protein | - |
| PYZ88_RS24085 (PYZ88_24050) | 85164..85781 | - | 618 | WP_000464630.1 | hypothetical protein | - |
| PYZ88_RS24090 (PYZ88_24055) | 85837..86493 | - | 657 | WP_000268552.1 | hypothetical protein | - |
| PYZ88_RS24095 (PYZ88_24060) | 86493..87920 | - | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| PYZ88_RS24100 (PYZ88_24065) | 87924..88424 | - | 501 | WP_000647188.1 | hypothetical protein | - |
| PYZ88_RS24105 (PYZ88_24070) | 88433..88744 | - | 312 | WP_002210541.1 | hypothetical protein | - |
| PYZ88_RS24110 (PYZ88_24075) | 88750..89256 | - | 507 | WP_000566443.1 | hypothetical protein | - |
| PYZ88_RS24115 (PYZ88_24080) | 89249..89923 | - | 675 | WP_000344149.1 | hypothetical protein | - |
| PYZ88_RS24120 (PYZ88_24085) | 89898..90179 | - | 282 | WP_000044823.1 | hypothetical protein | - |
| PYZ88_RS24125 (PYZ88_24090) | 90172..90549 | - | 378 | WP_001125904.1 | hypothetical protein | - |
| PYZ88_RS24130 (PYZ88_24095) | 90876..91019 | + | 144 | WP_000939033.1 | hypothetical protein | - |
| PYZ88_RS24135 (PYZ88_24100) | 91111..91746 | + | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| PYZ88_RS24140 (PYZ88_24105) | 91799..92071 | - | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| PYZ88_RS24145 (PYZ88_24110) | 92120..93301 | - | 1182 | WP_001207227.1 | KorB domain-containing protein | - |
| PYZ88_RS24150 (PYZ88_24115) | 93305..94090 | - | 786 | WP_001151305.1 | Sporulation initiation inhibitor protein Soj | VF |
| PYZ88_RS24155 (PYZ88_24120) | 94264..94575 | - | 312 | WP_000380893.1 | hypothetical protein | - |
| PYZ88_RS24160 (PYZ88_24125) | 94557..95006 | - | 450 | WP_001053910.1 | hypothetical protein | - |
| PYZ88_RS24165 (PYZ88_24130) | 95020..96264 | - | 1245 | WP_000098294.1 | site-specific DNA-methyltransferase | - |
| PYZ88_RS24170 (PYZ88_24135) | 96257..96619 | - | 363 | WP_001258026.1 | hypothetical protein | - |
| PYZ88_RS24175 (PYZ88_24140) | 96622..96879 | - | 258 | WP_228715768.1 | hypothetical protein | - |
| PYZ88_RS24180 (PYZ88_24145) | 97102..97299 | - | 198 | WP_000532167.1 | hypothetical protein | - |
| PYZ88_RS24185 (PYZ88_24150) | 97299..98237 | - | 939 | WP_000268394.1 | chromosome partitioning protein ParB | - |
| PYZ88_RS24190 (PYZ88_24155) | 98354..98899 | - | 546 | WP_000435225.1 | hypothetical protein | - |
| PYZ88_RS24195 (PYZ88_24160) | 98902..99471 | - | 570 | WP_001256126.1 | hypothetical protein | - |
| PYZ88_RS24200 (PYZ88_24165) | 99483..100046 | - | 564 | WP_000004671.1 | hypothetical protein | - |
| PYZ88_RS24205 (PYZ88_24170) | 100039..100467 | - | 429 | WP_000988988.1 | hypothetical protein | - |
| PYZ88_RS24210 (PYZ88_24175) | 100464..100811 | - | 348 | WP_000039129.1 | hypothetical protein | - |
| PYZ88_RS24215 (PYZ88_24180) | 100823..101956 | - | 1134 | WP_223369384.1 | hypothetical protein | - |
| PYZ88_RS24220 (PYZ88_24185) | 102001..102195 | - | 195 | WP_000757530.1 | DUF2997 domain-containing protein | - |
| PYZ88_RS24225 (PYZ88_24190) | 102244..102636 | - | 393 | WP_000018404.1 | hypothetical protein | - |
| PYZ88_RS24230 (PYZ88_24195) | 102698..104161 | - | 1464 | WP_004201081.1 | AAA family ATPase | - |
| PYZ88_RS24235 (PYZ88_24200) | 104235..105167 | - | 933 | WP_000434070.1 | hypothetical protein | - |
| PYZ88_RS24240 (PYZ88_24205) | 105729..106226 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| PYZ88_RS24245 (PYZ88_24210) | 106229..106717 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| PYZ88_RS24250 (PYZ88_24215) | 106814..107149 | + | 336 | WP_000683477.1 | hypothetical protein | - |
| PYZ88_RS24255 (PYZ88_24220) | 107164..107634 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| PYZ88_RS24260 (PYZ88_24225) | 107627..107998 | - | 372 | WP_000516918.1 | hypothetical protein | - |
| PYZ88_RS24265 (PYZ88_24230) | 108009..108203 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| PYZ88_RS24270 (PYZ88_24235) | 108544..109092 | - | 549 | WP_001061573.1 | hypothetical protein | - |
| PYZ88_RS24275 (PYZ88_24240) | 109255..109605 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PYZ88_RS24280 (PYZ88_24245) | 109610..109912 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| PYZ88_RS24285 (PYZ88_24250) | 109939..110232 | - | 294 | WP_001239998.1 | hypothetical protein | - |
| PYZ88_RS24290 (PYZ88_24255) | 110321..110593 | - | 273 | WP_001043046.1 | HU family DNA-binding protein | - |
| PYZ88_RS24295 (PYZ88_24260) | 110651..111178 | - | 528 | WP_004201083.1 | thermonuclease family protein | - |
| PYZ88_RS24300 (PYZ88_24265) | 111181..111372 | - | 192 | WP_001270409.1 | hypothetical protein | - |
| PYZ88_RS24305 (PYZ88_24270) | 111398..112255 | - | 858 | WP_001167036.1 | hypothetical protein | - |
| PYZ88_RS24310 (PYZ88_24275) | 112242..112472 | - | 231 | WP_000972665.1 | hypothetical protein | - |
| PYZ88_RS24315 (PYZ88_24280) | 112472..112990 | - | 519 | WP_000210757.1 | nitrite reductase | - |
| PYZ88_RS24320 (PYZ88_24285) | 112987..113433 | - | 447 | WP_000919343.1 | hypothetical protein | - |
| PYZ88_RS24325 (PYZ88_24290) | 113433..113792 | - | 360 | WP_000422769.1 | hypothetical protein | - |
| PYZ88_RS24330 (PYZ88_24295) | 113850..114278 | - | 429 | WP_000591076.1 | hypothetical protein | - |
| PYZ88_RS24335 (PYZ88_24300) | 114312..115172 | - | 861 | WP_004201087.1 | DsbA family protein | - |
| PYZ88_RS24340 (PYZ88_24305) | 115188..116147 | - | 960 | WP_000829617.1 | S49 family peptidase | - |
| PYZ88_RS24345 (PYZ88_24310) | 116147..117001 | - | 855 | WP_000539391.1 | hypothetical protein | - |
| PYZ88_RS24350 (PYZ88_24315) | 117006..117299 | - | 294 | WP_001370730.1 | hypothetical protein | - |
| PYZ88_RS24355 (PYZ88_24320) | 117310..117783 | - | 474 | WP_000057876.1 | hypothetical protein | - |
| PYZ88_RS24360 (PYZ88_24325) | 117880..118401 | - | 522 | WP_000648873.1 | hypothetical protein | - |
| PYZ88_RS24365 (PYZ88_24330) | 118404..118925 | - | 522 | WP_000393783.1 | hypothetical protein | - |
| PYZ88_RS24370 (PYZ88_24335) | 118930..119538 | - | 609 | WP_000849069.1 | hypothetical protein | - |
| PYZ88_RS24375 (PYZ88_24340) | 119806..120921 | + | 1116 | WP_000946104.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PYZ88_RS24380 (PYZ88_24345) | 120939..121373 | + | 435 | WP_004201092.1 | hypothetical protein | - |
| PYZ88_RS24385 (PYZ88_24350) | 122410..123510 | - | 1101 | WP_001348532.1 | RepB family plasmid replication initiator protein | - |
| PYZ88_RS24390 (PYZ88_24355) | 123495..123782 | - | 288 | WP_000127321.1 | hypothetical protein | - |
| PYZ88_RS24395 (PYZ88_24360) | 123787..124326 | - | 540 | WP_001447712.1 | conjugative transfer protein MobI(A/C) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|