MGE detailed information
MGE type: Genomic_island MGE length: 12175 bp
Accession: NZ_CP118607 Location: 5531679..5543853 Organism: Pseudomonas sp. PSKL.D1 Replicon: chromosome
Accession: NZ_CP118607 Location: 5531679..5543853 Organism: Pseudomonas sp. PSKL.D1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVV54_RS24820 (PVV54_24820) | 5527140..5527832 | + | 693 | WP_274907719.1 | ABC transporter permease | - |
| PVV54_RS24825 (PVV54_24825) | 5527832..5528521 | + | 690 | WP_274907720.1 | ABC transporter permease | - |
| PVV54_RS24830 (PVV54_24830) | 5528631..5529836 | + | 1206 | WP_274907721.1 | methyltransferase | - |
| PVV54_RS24835 (PVV54_24835) | 5530193..5530456 | - | 264 | WP_274907722.1 | DUF3077 domain-containing protein | - |
| PVV54_RS24840 (PVV54_24840) | 5530449..5530718 | - | 270 | WP_274907723.1 | hypothetical protein | - |
| PVV54_RS24845 (PVV54_24845) | 5531127..5531375 | + | 249 | WP_274907724.1 | hypothetical protein | - |
| PVV54_RS24855 (PVV54_24855) | 5531679..5532002 | + | 324 | WP_274907725.1 | helix-turn-helix transcriptional regulator | - |
| PVV54_RS24860 (PVV54_24860) | 5532407..5532880 | - | 474 | WP_274907726.1 | transcriptional regulator | Antitoxin Detail |
| PVV54_RS24865 (PVV54_24865) | 5532934..5533287 | - | 354 | WP_274907727.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| PVV54_RS24870 (PVV54_24870) | 5533418..5535676 | - | 2259 | WP_274907728.1 | Ferripyoverdine receptor | VF |
| PVV54_RS24875 (PVV54_24875) | 5535834..5536553 | + | 720 | WP_274907729.1 | Transcriptional regulatory protein OmpR | VF |
| PVV54_RS24880 (PVV54_24880) | 5536555..5537922 | + | 1368 | WP_274907730.1 | ATP-binding protein | - |
| PVV54_RS24885 (PVV54_24885) | 5538111..5539430 | - | 1320 | WP_274907731.1 | OprD family porin | - |
| PVV54_RS24890 (PVV54_24890) | 5539899..5541998 | + | 2100 | WP_274907732.1 | TonB-dependent siderophore receptor | - |
| PVV54_RS24895 (PVV54_24895) | 5542065..5543060 | - | 996 | WP_274907733.1 | IS110 family transposase ISWen2 | Transposase |
| PVV54_RS24900 (PVV54_24900) | 5543501..5543698 | - | 198 | WP_274907734.1 | hypothetical protein | - |
| PVV54_RS24905 (PVV54_24905) | 5543882..5544988 | - | 1107 | WP_274907735.1 | agmatine deiminase | - |
| PVV54_RS24910 (PVV54_24910) | 5545130..5548030 | - | 2901 | WP_274907736.1 | aminotransferase | - |
| PVV54_RS24915 (PVV54_24915) | 5548223..5548768 | + | 546 | WP_274907737.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|