MGE detailed information
MGE type: Conjugative plasmid MGE length: 41752 bp
Accession: NZ_CP118540 Location: 1..41752 Organism: Xylella fastidiosa strain ICMP 15197 Replicon: plasmid pXF879-41
Accession: NZ_CP118540 Location: 1..41752 Organism: Xylella fastidiosa strain ICMP 15197 Replicon: plasmid pXF879-41
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXH81_RS11590 (PXH81_11590) | 1092..1379 | - | 288 | WP_004091517.1 | EexN family lipoprotein | - |
| PXH81_RS11595 (PXH81_11595) | 1419..2204 | - | 786 | WP_004091516.1 | P-type conjugative transfer protein TrbJ | - |
| PXH81_RS11600 (PXH81_11600) | 2223..3623 | - | 1401 | WP_004091515.1 | TrbI/VirB10 family protein | - |
| PXH81_RS11605 (PXH81_11605) | 3629..4105 | - | 477 | WP_050812601.1 | conjugal transfer protein TrbH | - |
| PXH81_RS11610 (PXH81_11610) | 4108..4998 | - | 891 | WP_038229217.1 | P-type conjugative transfer protein TrbG | - |
| PXH81_RS11615 (PXH81_11615) | 5015..5731 | - | 717 | WP_004091508.1 | conjugal transfer protein TrbF | - |
| PXH81_RS11620 (PXH81_11620) | 5728..8292 | - | 2565 | WP_072866396.1 | conjugal transfer protein TrbE | - |
| PXH81_RS11625 (PXH81_11625) | 8280..8600 | - | 321 | WP_004091502.1 | conjugal transfer protein TrbD | - |
| PXH81_RS11630 (PXH81_11630) | 8603..8995 | - | 393 | WP_004091500.1 | TrbC/VirB2 family protein | - |
| PXH81_RS11635 (PXH81_11635) | 9008..9967 | - | 960 | WP_038232472.1 | Putative conjugal transfer protein | VF |
| PXH81_RS11640 (PXH81_11640) | 10165..10521 | - | 357 | WP_038232465.1 | transcriptional regulator | - |
| PXH81_RS11645 (PXH81_11645) | 10639..10998 | + | 360 | WP_004091494.1 | single-stranded DNA-binding protein | - |
| PXH81_RS11650 (PXH81_11650) | 11042..11389 | + | 348 | WP_050812600.1 | hypothetical protein | - |
| PXH81_RS11655 (PXH81_11655) | 11433..12344 | + | 912 | WP_004091489.1 | replication protein RepA | - |
| PXH81_RS11660 (PXH81_11660) | 13063..13383 | + | 321 | WP_004091487.1 | KleE stable inheritance protein | - |
| PXH81_RS11665 (PXH81_11665) | 13579..13878 | + | 300 | WP_038232470.1 | transcriptional regulator KorA | - |
| PXH81_RS11670 (PXH81_11670) | 13881..14645 | + | 765 | WP_004091486.1 | ParA family protein | - |
| PXH81_RS11675 (PXH81_11675) | 14654..15673 | + | 1020 | WP_178086808.1 | ParB/RepB/Spo0J family partition protein | - |
| PXH81_RS11680 (PXH81_11680) | 15771..16124 | + | 354 | WP_004091455.1 | hypothetical protein | - |
| PXH81_RS11685 (PXH81_11685) | 16151..16747 | + | 597 | WP_004091453.1 | hypothetical protein | - |
| PXH81_RS11690 (PXH81_11690) | 16851..18065 | - | 1215 | WP_004091452.1 | IS200-IS605 family transposase IS609 | Transposase |
| PXH81_RS11695 (PXH81_11695) | 18088..18501 | + | 414 | WP_081370385.1 | IS200/IS605 family transposase | - |
| PXH81_RS11700 (PXH81_11700) | 18574..19020 | - | 447 | WP_230950297.1 | conjugal transfer protein TraM | - |
| PXH81_RS11705 (PXH81_11705) | 19026..19751 | - | 726 | WP_004091441.1 | AAA family ATPase | - |
| PXH81_RS11710 (PXH81_11710) | 19751..20140 | - | 390 | WP_004091439.1 | TraK family protein | - |
| PXH81_RS11715 (PXH81_11715) | 20354..20707 | + | 354 | WP_004091438.1 | conjugal transfer transcriptional regulator TraJ | - |
| PXH81_RS11720 (PXH81_11720) | 20742..23234 | + | 2493 | WP_004091435.1 | Protein TraI | Relaxase |
| PXH81_RS11725 (PXH81_11725) | 23231..25165 | + | 1935 | WP_004091433.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PXH81_RS11730 (PXH81_11730) | 25162..25698 | + | 537 | WP_004091431.1 | conjugative transfer signal peptidase TraF | - |
| PXH81_RS11735 (PXH81_11735) | 25727..27784 | + | 2058 | WP_274849832.1 | DNA topoisomerase 3 | - |
| PXH81_RS11740 (PXH81_11740) | 27787..28149 | + | 363 | WP_004091427.1 | hypothetical protein | - |
| PXH81_RS11745 (PXH81_11745) | 28155..32270 | + | 4116 | WP_004091425.1 | zincin-like metallopeptidase domain-containing protein | - |
| PXH81_RS11750 (PXH81_11750) | 32394..32819 | + | 426 | WP_004091423.1 | antirestriction protein | - |
| PXH81_RS11755 (PXH81_11755) | 33087..33344 | + | 258 | WP_038229233.1 | hypothetical protein | - |
| PXH81_RS11760 (PXH81_11760) | 33538..34170 | - | 633 | WP_004091419.1 | YkgJ family cysteine cluster protein | - |
| PXH81_RS11765 (PXH81_11765) | 34291..34848 | - | 558 | WP_004091417.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PXH81_RS11770 (PXH81_11770) | 35038..35412 | - | 375 | WP_010894485.1 | DUF5615 family PIN-like protein | - |
| PXH81_RS11775 (PXH81_11775) | 35409..35639 | - | 231 | WP_004091411.1 | DUF433 domain-containing protein | - |
| PXH81_RS11780 (PXH81_11780) | 35845..36150 | - | 306 | WP_004091409.1 | BrnA antitoxin family protein | Antitoxin Detail |
| PXH81_RS11785 (PXH81_11785) | 36137..36427 | - | 291 | WP_038229226.1 | BrnT family toxin | Toxin Detail |
| PXH81_RS11790 (PXH81_11790) | 36604..36777 | + | 174 | Protein_41 | XRE family transcriptional regulator | - |
| PXH81_RS11795 (PXH81_11795) | 36888..37208 | + | 321 | WP_004091397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PXH81_RS11800 (PXH81_11800) | 37338..37664 | + | 327 | WP_004091396.1 | DNA-binding protein | - |
| PXH81_RS11805 (PXH81_11805) | 37806..38732 | - | 927 | WP_051606204.1 | hypothetical protein | - |
| PXH81_RS11810 (PXH81_11810) | 39138..39554 | - | 417 | WP_038232460.1 | IS200-IS605 family transposase IS609 | Transposase |
| PXH81_RS11815 (PXH81_11815) | 39577..40734 | + | 1158 | WP_038232468.1 | IS200-IS605 family transposase IS609 | Transposase |
| PXH81_RS11820 (PXH81_11820) | 40830..41435 | - | 606 | WP_038229220.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|