MGE detailed information
MGE type: Prophage MGE length: 52791 bp
Accession: NZ_CP118149 Location: 6540858..6593648 Organism: Pseudomonas chlororaphis strain NCCB 60037 Replicon: chromosome
Accession: NZ_CP118149 Location: 6540858..6593648 Organism: Pseudomonas chlororaphis strain NCCB 60037 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUP59_RS29775 (PUP59_29775) | 6538559..6539875 | + | 1317 | WP_036985516.1 | peptidylprolyl isomerase SurA | - |
| PUP59_RS29780 (PUP59_29780) | 6539872..6540861 | + | 990 | WP_041984687.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
| PUP59_RS29785 (PUP59_29785) | 6540858..6541676 | + | 819 | WP_009051161.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| PUP59_RS29790 (PUP59_29790) | 6541799..6542179 | + | 381 | WP_041984689.1 | Co2+/Mg2+ efflux protein ApaG | - |
| PUP59_RS29795 (PUP59_29795) | 6542179..6543060 | + | 882 | WP_041984691.1 | symmetrical bis(5'-nucleosyl)-tetraphosphatase | - |
| PUP59_RS29800 (PUP59_29800) | 6543093..6543422 | + | 330 | WP_041984693.1 | thiosulfate sulfurtransferase GlpE | - |
| PUP59_RS29805 (PUP59_29805) | 6543718..6545640 | + | 1923 | WP_007926124.1 | PrkA family serine protein kinase | - |
| PUP59_RS29810 (PUP59_29810) | 6545829..6547100 | + | 1272 | WP_009051164.1 | YeaH/YhbH family protein | - |
| PUP59_RS29815 (PUP59_29815) | 6547097..6548659 | + | 1563 | WP_009051165.1 | SpoVR family protein | - |
| PUP59_RS29820 (PUP59_29820) | 6548724..6549953 | + | 1230 | WP_009051166.1 | multifunctional CCA addition/repair protein | - |
| PUP59_RS29825 (PUP59_29825) | 6550036..6550554 | - | 519 | WP_009051167.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| PUP59_RS29830 (PUP59_29830) | 6550545..6550898 | - | 354 | WP_007926118.1 | dihydroneopterin aldolase | - |
| PUP59_RS29835 (PUP59_29835) | 6550973..6551542 | + | 570 | WP_009051169.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| PUP59_RS29840 (PUP59_29840) | 6551584..6552609 | - | 1026 | WP_009045890.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| PUP59_RS29845 (PUP59_29845) | 6552810..6553025 | + | 216 | WP_002551877.1 | 30S ribosomal protein S21 | - |
| PUP59_RS29850 (PUP59_29850) | 6553495..6555459 | + | 1965 | WP_041984697.1 | DNA primase | - |
| PUP59_RS29855 (PUP59_29855) | 6555527..6557374 | + | 1848 | WP_007926106.1 | RNA polymerase sigma factor RpoD | - |
| PUP59_RS29860 (PUP59_29860) | 6557497..6561240 | + | 3744 | WP_009051172.1 | hypothetical protein | VF |
| PUP59_RS29870 (PUP59_29870) | 6561381..6562445 | - | 1065 | WP_041984703.1 | IS91 family transposase ISTha3 | Transposase |
| PUP59_RS29875 (PUP59_29875) | 6562448..6562684 | - | 237 | WP_041984705.1 | helix-turn-helix transcriptional regulator | - |
| PUP59_RS29880 (PUP59_29880) | 6562777..6563013 | + | 237 | WP_041984708.1 | hypothetical protein | - |
| PUP59_RS29885 (PUP59_29885) | 6563014..6565704 | + | 2691 | WP_231999305.1 | toprim domain-containing protein | - |
| PUP59_RS29890 (PUP59_29890) | 6566173..6566466 | + | 294 | WP_124355756.1 | hypothetical protein | - |
| PUP59_RS29895 (PUP59_29895) | 6566477..6566728 | + | 252 | WP_041984712.1 | hypothetical protein | - |
| PUP59_RS29900 (PUP59_29900) | 6566791..6567081 | + | 291 | WP_041985161.1 | hypothetical protein | - |
| PUP59_RS29905 (PUP59_29905) | 6567074..6567313 | + | 240 | WP_041984715.1 | Arc family DNA-binding protein | - |
| PUP59_RS29910 (PUP59_29910) | 6567307..6567555 | + | 249 | WP_041984717.1 | hypothetical protein | - |
| PUP59_RS29915 (PUP59_29915) | 6568343..6568606 | - | 264 | WP_041984720.1 | ogr/Delta-like zinc finger family protein | - |
| PUP59_RS29920 (PUP59_29920) | 6568687..6569553 | - | 867 | WP_052443044.1 | phage portal protein | - |
| PUP59_RS29925 (PUP59_29925) | 6569465..6571528 | - | 2064 | WP_052443037.1 | terminase family protein | - |
| PUP59_RS29930 (PUP59_29930) | 6571692..6572612 | + | 921 | WP_041984726.1 | GPO family capsid scaffolding protein | - |
| PUP59_RS29935 (PUP59_29935) | 6572614..6573636 | + | 1023 | WP_041984731.1 | phage major capsid protein, P2 family | - |
| PUP59_RS29940 (PUP59_29940) | 6573633..6574355 | + | 723 | WP_041984734.1 | phage terminase small subunit | - |
| PUP59_RS29945 (PUP59_29945) | 6574454..6574915 | + | 462 | WP_041984736.1 | head completion/stabilization protein | - |
| PUP59_RS29950 (PUP59_29950) | 6574912..6575385 | + | 474 | WP_041984738.1 | hypothetical protein | - |
| PUP59_RS29955 (PUP59_29955) | 6575382..6575834 | + | 453 | WP_041984741.1 | phage tail protein | - |
| PUP59_RS29960 (PUP59_29960) | 6575821..6576501 | + | 681 | WP_041984743.1 | virion morphogenesis protein | - |
| PUP59_RS29965 (PUP59_29965) | 6576513..6577628 | + | 1116 | WP_041984745.1 | DUF2586 domain-containing protein | - |
| PUP59_RS29970 (PUP59_29970) | 6577636..6578085 | + | 450 | WP_041984748.1 | DUF2597 family protein | - |
| PUP59_RS29975 (PUP59_29975) | 6578085..6578297 | + | 213 | WP_028681546.1 | TraR/DksA C4-type zinc finger protein | - |
| PUP59_RS29980 (PUP59_29980) | 6578393..6578647 | + | 255 | WP_041984753.1 | hypothetical protein | - |
| PUP59_RS29985 (PUP59_29985) | 6578644..6579177 | + | 534 | WP_041984756.1 | lysozyme | - |
| PUP59_RS29990 (PUP59_29990) | 6579174..6579677 | + | 504 | WP_052443038.1 | lysis protein | - |
| PUP59_RS29995 (PUP59_29995) | 6579674..6579964 | + | 291 | WP_041984758.1 | putative phage tail assembly chaperone | - |
| PUP59_RS30000 (PUP59_30000) | 6580133..6582118 | + | 1986 | WP_041984759.1 | phage tail tape measure protein | - |
| PUP59_RS30005 (PUP59_30005) | 6582115..6582432 | + | 318 | WP_041984762.1 | DUF2590 family protein | - |
| PUP59_RS30010 (PUP59_30010) | 6582429..6583604 | + | 1176 | WP_041984765.1 | baseplate J/gp47 family protein | - |
| PUP59_RS30015 (PUP59_30015) | 6583601..6584125 | + | 525 | WP_028681539.1 | phage tail protein | - |
| PUP59_RS30020 (PUP59_30020) | 6584135..6585820 | + | 1686 | WP_041984768.1 | phage tail protein | - |
| PUP59_RS30025 (PUP59_30025) | 6585829..6586536 | + | 708 | WP_041984770.1 | hypothetical protein | - |
| PUP59_RS30030 (PUP59_30030) | 6586533..6587456 | + | 924 | WP_041984773.1 | hypothetical protein | - |
| PUP59_RS30035 (PUP59_30035) | 6587453..6588001 | + | 549 | WP_041984775.1 | hypothetical protein | - |
| PUP59_RS30040 (PUP59_30040) | 6587998..6588702 | + | 705 | WP_041984777.1 | hypothetical protein | - |
| PUP59_RS30045 (PUP59_30045) | 6588675..6589646 | + | 972 | WP_041984780.1 | hypothetical protein | - |
| PUP59_RS30050 (PUP59_30050) | 6589643..6590284 | - | 642 | WP_041985169.1 | hypothetical protein | - |
| PUP59_RS30055 (PUP59_30055) | 6590510..6590692 | + | 183 | WP_028681531.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| PUP59_RS30060 (PUP59_30060) | 6590725..6591150 | + | 426 | WP_041984783.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| PUP59_RS30065 (PUP59_30065) | 6591327..6591974 | - | 648 | WP_124355757.1 | hypothetical protein | - |
| PUP59_RS30070 (PUP59_30070) | 6592816..6593025 | + | 210 | WP_124355758.1 | hypothetical protein | - |
| PUP59_RS30075 (PUP59_30075) | 6594262..6595065 | + | 804 | WP_080768765.1 | lipopolysaccharide biosynthesis protein | - |
| PUP59_RS30080 (PUP59_30080) | 6595151..6597505 | - | 2355 | WP_041984790.1 | glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase | - |
| PUP59_RS30085 (PUP59_30085) | 6597720..6598181 | + | 462 | WP_009051175.1 | Lrp/AsnC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|